RNA id: TU198672


Basic Information

Item Value
RNA id TU198672
length 618
lncRNA type inter_gene
GC content 0.71
exon number 1
gene id G134504
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 18832232 ~ 18832849 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ggacagagcgcacgtggcgcgggcactggaacgggacagagcgcacgtggcgcgggcactggaacgggacagagcgcacgtggcgcgggcactggaacgggacagagcgcacgtggcgcgggcactggaacgggacagagcgcacgtggcgcgggcactggaacgggacagagcgcacgtggcgcgggcactggaacgggacagagcgcacgtggcgcgggcactggaacgggacagagcgcacgtggcgcgggcactggaacgggacagagcgcacgtggcgcgggcactggaacgggacggctgggcggaaccagcgggctaacgggacggctgggcggaaccagcgggctaacgggacggctgggcggaaccagcgggctaacgggacggctgggcggaaccagcgggctacggggcggctggggcggaaccagcgggctaacgggacggctgggcggaaccagcgggctaacgggacggctgggcggaaccagcgggctaacgggacggctgggcggaaccagcgggctaacggggtagctgaacgggaacaggaactcaggatacaggggaggtgcccagtctaagtccaagtccaagtctacatcatccagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198611 lncRNA downstream 143120 18688913 ~ 18689112 (-) False LOC122324083
TU198549 lncRNA downstream 245906 18572068 ~ 18586326 (-) True G134428
TU198546 lncRNA downstream 298732 18533173 ~ 18533500 (-) True G134426
XR_006247106.1 lncRNA downstream 300215 18523200 ~ 18532017 (-) True LOC122324145
TU198837 lncRNA upstream 214672 19047521 ~ 19057963 (-) True G134592
TU198898 lncRNA upstream 429869 19262718 ~ 19264297 (-) True G134632
XR_006247047.1 lncRNA upstream 582050 19414899 ~ 19421472 (-) True LOC122323683
TU198957 lncRNA upstream 659686 19492535 ~ 19493032 (-) True G134675
XR_006247104.1 lncRNA upstream 665105 19497954 ~ 19528703 (-) True LOC122324126
XM_043218469.1 mRNA downstream 12932 18766828 ~ 18819300 (-) False hivep1
XM_043218470.1 mRNA downstream 13087 18766828 ~ 18819145 (-) True hivep1
XM_043218468.1 mRNA downstream 43792 18766828 ~ 18788440 (-) False hivep1
XM_043218471.1 mRNA downstream 43792 18768480 ~ 18788440 (-) False hivep1
XM_043218472.1 mRNA downstream 65557 18761992 ~ 18766675 (-) True edn1
XM_043217004.1 mRNA upstream 18000 18850849 ~ 18861300 (-) True tmem170b
XM_043217005.1 mRNA upstream 18000 18850849 ~ 18861299 (-) False tmem170b
XM_043218132.1 mRNA upstream 94640 18927489 ~ 18933228 (-) True smim13
XM_043218013.1 mRNA upstream 110178 18943027 ~ 18951560 (-) True zc3h12ab
XM_043218012.1 mRNA upstream 118832 18951681 ~ 18956160 (-) True LOC122323898
XR_006247044.1 other downstream 644211 18184141 ~ 18188021 (-) False si:dkey-266f7.5
XR_006247043.1 other downstream 644212 18184141 ~ 18188020 (-) False si:dkey-266f7.5
XR_006247042.1 other downstream 644214 18184141 ~ 18188018 (-) False si:dkey-266f7.5
TU198381 other downstream 820833 18010882 ~ 18011399 (-) True G134318
TU198368 other downstream 896796 17929689 ~ 17935436 (-) True s100a10a
TU198770 other upstream 43765 18876614 ~ 18933139 (-) False smim13
TU198769 other upstream 94672 18927521 ~ 18933139 (-) False smim13
XR_006246998.1 other upstream 709933 19542782 ~ 19652807 (-) False khdrbs3
XR_006246997.1 other upstream 709933 19542782 ~ 19652806 (-) False khdrbs3
XR_006247087.1 other upstream 837938 19670787 ~ 19688386 (-) False LOC122324012

Expression Profile