RNA id: XM_043218132.1


Basic Information

Item Value
RNA id XM_043218132.1
length 2068
RNA type mRNA
GC content 0.42
exon number 3
gene id smim13
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 18876614 ~ 18933228 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGGCAACCAGCGTTAAATTAAAGAAGTACACGGCACTACAATCCCCACAAGTCCTTGCGGCGGAATGGTACGTACGAACGCTTCCGGGTCATCCTCAGATTGAGTGTGTTGTTGAGGCTCGAGTTCGCTGTTTTCTCgctcttctcttttctctgtaAATGGCGCAATGATGTAGATAAGGAGAACATTTGAGGCTCTCCGTGACATGCGCTACCGGCCTCCGTCCCCGCGGGATTCGGCGTGAAGACTGAGGCGTGAACGTCTgaaagaagaggaggatgtGGCAGAGTGTTGGTTTGACCGTGCTGGTGATTGTGGCCACGCTGATATGTGTCCTCCTCTTCATGCTCTTCGGGTGGTACGTGGTGTGGCAGCTCTTCCTGTCTAAGTTTAAGTTCCTGCGGGAGTTGGTGGGAGACACCGGTTCTCCACAGGCCGAGACCGAGCCCTCCGAGTCGGAGAGTGAGCGCAGCTCGCCCCCAACGCCCCGTCACCGACCCAAAAGCGCTCGCCAAAGGATCGTCCCTCTTGACAGCACTACATAGAGCCCTGAGCCACGTCTCCTCCAGTTAACCGTCGTAACCGCGAGGTCATTTCCTGTGTAACGGACCTGTGCTCTCCTTCACGTCCCTCATCATGGTTCCACTCGTTCACCGCCCGTCTGAAGGCAcggtttttttttgtacgaaCCTGCTGAGCCACACGTTCATGCTCCGACTAACACGCTGCTACCCTCCGCTCCGGATCTATAGTATGTTTACGTGAGAGCGCATCCATGCGTATTTGTTACTGGTTAACCAATCTGTTAATGACTCAAGctcacaaacaaaagaaaaaaaagatggcgACCAAACGTCCAGTGTTTCTGTGAGCTAACAGCACTAATATTCACACTGACACCGCACTGGGTCCGACATGTACGCAAATCGTTTCTGCCacagaatacaaataaaaaagaaaatgatggctttttatctcacagttctgatGGAAAACAGAATTCAGAGATACAAAcgtctcacaattctgactttttttctgaaatgagtttacattaaaaaaggtaattgcgaTTTTCTGACAtaattttaaccttttttttttccttgcaattGTGAGTTTCTCTCTGAATTCTGAGATTACATAAAAAAGATAATTGCGACTGTCTCACAgttaggattttttttcccttgtaaTTGCAAGTTTATACAATTCTGATTTGTATATTtaacaattctgactttttttccataactgacttttttttttttttacaatttagatttttctttaaaattgtatgaaccttttaattcgttttttttttattccatgcaTAAACAAGATATAATTGCACATTTACTGttatgtgaaaacaaaaaaaacaatttcaaacaAAGTCGCAACTacctttttaattcatatttatttatttttctgctgaAACAGGTGTCCGTACTAACTTGTCCAACAAGTGCAATGAAAGcttctttatttttcacaacATTTTGACAGGACCGCACACCCTAACAATGTTAAGAATAGGCACGTTAGgttgatgtttttgtaaaattttgcCCCAAACACAGCATAGTGCTTTATGATGGCTGCCATCGGTCGCCTCCGCTCTGCATCCTTGTGCCTCTGGCTTGGGTTGAAGTCGTCCTGTTTGAGCGGATGGATCTCAGATACTCCTGCTGTTCCCAGCTTTAGAGAAGCATTAGAGCTAGAAATGCTGCACTGACCTCAGCTCAGCCGATCCTGCCTGTGTGTGAAACTGTGTTCACAGGTCAGCTTCTGAAGAAACGCCTTTATCACCAGTGTAGACGGtcacatgttttgtttttttttttttttcttttttgggtccCTTTTATGACAGTAGATGTTTAcccttcataataaatatatttcagaaaacactGAAGTTGTTTATGCGAGCTCTGactttattgcatgttttaattaaaacttaacTCCGTCTCAGGTGGCTTACTGCTGTAATTTAAAAGACGGGTTTTGTGCTTCAGTTATCATTACCaactaataaaactattttataatcaA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198672 lncRNA downstream 94640 18832232 ~ 18832849 (-) True G134504
TU198611 lncRNA downstream 238377 18688913 ~ 18689112 (-) False LOC122324083
TU198549 lncRNA downstream 341163 18572068 ~ 18586326 (-) True G134428
TU198546 lncRNA downstream 393989 18533173 ~ 18533500 (-) True G134426
TU198545 lncRNA downstream 396868 18523697 ~ 18530621 (-) False LOC122324145
TU198837 lncRNA upstream 114293 19047521 ~ 19057963 (-) True G134592
TU198898 lncRNA upstream 329490 19262718 ~ 19264297 (-) True G134632
XR_006247047.1 lncRNA upstream 481671 19414899 ~ 19421472 (-) True LOC122323683
TU198957 lncRNA upstream 559307 19492535 ~ 19493032 (-) True G134675
XR_006247104.1 lncRNA upstream 564726 19497954 ~ 19528703 (-) True LOC122324126
XM_043217004.1 mRNA downstream 66189 18850849 ~ 18861300 (-) True tmem170b
XM_043217005.1 mRNA downstream 66190 18850849 ~ 18861299 (-) False tmem170b
XM_043218469.1 mRNA downstream 108189 18766828 ~ 18819300 (-) False hivep1
XM_043218470.1 mRNA downstream 108344 18766828 ~ 18819145 (-) True hivep1
XM_043218468.1 mRNA downstream 139049 18766828 ~ 18788440 (-) False hivep1
XM_043218013.1 mRNA upstream 9799 18943027 ~ 18951560 (-) True zc3h12ab
XM_043218012.1 mRNA upstream 18453 18951681 ~ 18956160 (-) True LOC122323898
XM_043217373.1 mRNA upstream 40934 18974162 ~ 18984673 (-) True thrap3b
XM_043218112.1 mRNA upstream 57004 18990232 ~ 19025335 (-) False LOC122323972
XM_043218111.1 mRNA upstream 57004 18990232 ~ 19025335 (-) True LOC122323972
XR_006247044.1 other downstream 739468 18184141 ~ 18188021 (-) False si:dkey-266f7.5
XR_006247043.1 other downstream 739469 18184141 ~ 18188020 (-) False si:dkey-266f7.5
XR_006247042.1 other downstream 739471 18184141 ~ 18188018 (-) False si:dkey-266f7.5
TU198381 other downstream 916090 18010882 ~ 18011399 (-) True G134318
TU198368 other downstream 992053 17929689 ~ 17935436 (-) True s100a10a
XR_006246998.1 other upstream 609554 19542782 ~ 19652807 (-) False khdrbs3
XR_006246997.1 other upstream 609554 19542782 ~ 19652806 (-) False khdrbs3
XR_006247087.1 other upstream 737559 19670787 ~ 19688386 (-) False LOC122324012
XR_006247086.1 other upstream 752947 19686175 ~ 19688386 (-) True LOC122324012
TU199303 other upstream 1448792 20382020 ~ 20382727 (-) True G134895

Expression Profile