RNA id: XM_043217005.1


Basic Information

Item Value
RNA id XM_043217005.1
length 1497
RNA type mRNA
GC content 0.48
exon number 3
gene id tmem170b
representative False

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 18850849 ~ 18861300 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cgtgtatgtgtgtgattgagagagagcgagagagagagagagagagtgtgtgtgtatgtgtgagtgtatgtgtgtgtcagccGTACCCATCATGGCCCCTGAGCAGCAGCTGATCAGACGGACCGCCGCTCCGCCATCCTCCTCCAGCGAGCAGCGGCACCGGTGAAGAGGCTCCATGTGTCCCCCATCCTCGGTCAGATATCTGAGCAAGAGGGCCGCGCTCCAGCCGCCCAGCGCGAACATGAACAAGGATTATTCCATTAATCTATCGGTGCAGCAAGTGCTCAGCCTGTGGGTCCAGGGCACGGTACCGACCCTACAGCACTTCACAGAGATGTGGTACTGGGTGTTCCTGTGGTGTCTATTCTCGTCTCTGTTCGTTCACAGTGCCGTGGGTCTGCTGATGTGTGTGACGCTGCAGCGTCATAAGAGAGGACGGATCATCACACTGGTGCTCATCAGCGTGGGGTTCCTGGCCTCTCTCACCGGCGGGGTCATCACTAGTGCAGCGGTGGCAGGTGTGTATCGTGTGGCAGGGAAGGACATGGCTCCTCTCGAAGCTCTGGTGTTCGGGGTGGGCCAGACCGCTTTCACCGTCATCATCTCATTCTCACGGATCTTGGCCACTCTTTAAACGGGCTAAAAGCGTTATTGATCGACACACCTAGCAGCCAATCGGCCGGCGGAGGAGCCAAGGTTGAGGTGAGTGGGGTTAAACCGCAGAAGTTTTGTCTGCGGTGCAAAGCGATGAGCTTTAGGAGTCACCGATGGCCGACGGACCACTATATGACACCCTCTTGgagattttaacatttcaagaaGCAAAAACAGCATTATAGGCCAACGACTAAACTCTCTCAACGTGCCAACCGCCTCGATGGAGGATTGAGACGACTCTCCGGATGTCTGTTTGTCTTCGTTAAAcgtttgtttcgtttttttgcaCACGGATCGCTTCAGCTTTACGTAAACTGGCTGGTTTTGGAGCCGTAGCTGGGCTGTCAGGCCGAGATGGATGCATCGAAATCATCCTCTAATAATTTGACTGTCTGTCCGTCATCAAACATTTGATCAATTCTGCTCTGCTGAACGGCCCAAAAAGCGTTcctgttttgtattattatagaCTTTCCCTTTGGTCCAGCGGTATTACCATGTCcagttttctttttccactTTGCACTTTCTGCATTTTGAAAACCGTCCAAAAGGTGTAAGATCTATACGCTGGGATGCAATATGGACATTAATTTAAGGAGTTTTAAGTGTAATCTGGTCTCTTTTAATGAATATCAATTTATCCATAATGGAAAAATGCCTTATTATAATATGGTAACGCATCAGTATCAATATTTAACTGTGGTATTTAATCAGTTGTCAGTTTTAAAACGAAGACAAGTATTCGAAAAGTCACTATGGACTACAACGTCTTGTTCTGTGTCAGGATGTGATGTAATCCACCAACTGCGATTATATCTTGGAAACATTCAAATCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198672 lncRNA downstream 18000 18832232 ~ 18832849 (-) True G134504
TU198611 lncRNA downstream 161737 18688913 ~ 18689112 (-) False LOC122324083
TU198549 lncRNA downstream 264523 18572068 ~ 18586326 (-) True G134428
TU198546 lncRNA downstream 317349 18533173 ~ 18533500 (-) True G134426
TU198545 lncRNA downstream 320228 18523697 ~ 18530621 (-) False LOC122324145
TU198837 lncRNA upstream 186222 19047521 ~ 19057963 (-) True G134592
TU198898 lncRNA upstream 401419 19262718 ~ 19264297 (-) True G134632
XR_006247047.1 lncRNA upstream 553600 19414899 ~ 19421472 (-) True LOC122323683
TU198957 lncRNA upstream 631236 19492535 ~ 19493032 (-) True G134675
XR_006247104.1 lncRNA upstream 636655 19497954 ~ 19528703 (-) True LOC122324126
XM_043218469.1 mRNA downstream 31549 18766828 ~ 18819300 (-) False hivep1
XM_043218470.1 mRNA downstream 31704 18766828 ~ 18819145 (-) True hivep1
XM_043218468.1 mRNA downstream 62409 18766828 ~ 18788440 (-) False hivep1
XM_043218471.1 mRNA downstream 62409 18768480 ~ 18788440 (-) False hivep1
XM_043218472.1 mRNA downstream 84174 18761992 ~ 18766675 (-) True edn1
XM_043218132.1 mRNA upstream 66190 18927489 ~ 18933228 (-) True smim13
XM_043218013.1 mRNA upstream 81728 18943027 ~ 18951560 (-) True zc3h12ab
XM_043218012.1 mRNA upstream 90382 18951681 ~ 18956160 (-) True LOC122323898
XM_043217373.1 mRNA upstream 112863 18974162 ~ 18984673 (-) True thrap3b
XM_043218112.1 mRNA upstream 128933 18990232 ~ 19025335 (-) False LOC122323972
XR_006247044.1 other downstream 662828 18184141 ~ 18188021 (-) False si:dkey-266f7.5
XR_006247043.1 other downstream 662829 18184141 ~ 18188020 (-) False si:dkey-266f7.5
XR_006247042.1 other downstream 662831 18184141 ~ 18188018 (-) False si:dkey-266f7.5
TU198381 other downstream 839450 18010882 ~ 18011399 (-) True G134318
TU198368 other downstream 915413 17929689 ~ 17935436 (-) True s100a10a
TU198770 other upstream 15315 18876614 ~ 18933139 (-) False smim13
TU198769 other upstream 66222 18927521 ~ 18933139 (-) False smim13
XR_006246998.1 other upstream 681483 19542782 ~ 19652807 (-) False khdrbs3
XR_006246997.1 other upstream 681483 19542782 ~ 19652806 (-) False khdrbs3
XR_006247087.1 other upstream 809488 19670787 ~ 19688386 (-) False LOC122324012

Expression Profile