RNA id: XM_043217009.1


Basic Information

Item Value
RNA id XM_043217009.1
length 2587
RNA type mRNA
GC content 0.49
exon number 4
gene id maneal
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 2876924 ~ 2884651 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCGACAAACCCGCGAGACTCCACCTCCCAGTAACAAGAGACGATTTATCGTCAGCACGCCGGCGACGGAGGGGCACGGGAATCGGCCGAAAGCCTTTCATCCCGCGGGAAAGAATTCGAACAGAGCTCCGCGGCGTTCGGTTTCGGAGACGGACACGGACGCGCCGGTGCACGTGACAAACGCGTGATTGCGTTTCCGTCGAATTCAAACGGGCGTGTGCGACTTAGCGAAAACAAATCTACGCGATGTTGAGGTATGAATACAGCAGGTCGCCGGTGTTCCGTGATAAATAACGCTTAGCGTCTTCGCTGCACGGCGAGAAATTAATCGATTCGTCCATCATTTGTACGGTTTGTTAACGCTATGAAGATAATGGCTTCCTGACGGGGACCGAGCGACCGATCCAGAGTGCCGAATGCAAGCTGGAAATGGGACACGGGCATTTGACGCCCCGCTTCTGGAGGCCTCGGTCGTACTAACCTCCGCGTGAACCGCCGCCtccagcaccacggacagcgaCCATGAACAGGTTGCGCAGGAAAGCGTGCGTGGCTCTTCTGTTGTTCACTTTGTTTATTTTCGGCACCATGATGGGCCTACGGACCCTCAAGCCCACCGATGGCTTCTCGGATCTCGCTCCGGGGATGGAGCTGATGCCTTTGGTCGGAGAGCGAGTGGAGCAGAGACCCAATCCCGTAGCCGAATCGGCGGGTCAGAATGGTGGCGTGGCCAGTGACACCAAGATCGTGTTCTCCAACTCTGGACCCGACCACAGCATATTCTACGACATtcacattttctattatttatggTACGGCTCGCCACAGATGGACAGTAGTTATATACACTGGGACCATGTACTGGTGCCGCACTGGGACCCCAAAATAGCTTCCAGTCACCCTAAAGGACGCCACAATCCTCCAGACGACATCGCGTCCAGTTATTACCCTGAACTGGGACCCTACAGCTCCAGAGATCCGGATGTCATTGAATCCCACATGGCGCAAATCGAAGCTGCCGCTGCAGGTGTGGTGGTCCTTTCCTGGTACCCTCCTGGTGTGGCAGATGAACATGGCAAACCCTCGGAGGATCTAGTGCCAGCTGTAATGGACGCTGCCCATAGACACAGTATCAAGGTTGCGTTTCACCTGCAGCCCTACAAAGGCCGGACGGACCTCAGTGTGCATGACAACATCAAATACATCATTGACAAATATGGCAAGCATGGGGCTTTCTACAAGTTCAAGTCCAGCACTGGGAAAATCCTTCCTCTCTTTTATGTGTACGACTCCTACCTTACCCCTCCGGAGGCCTGGGCTGAGCTGCTGACCGTCAGGGGCTCTCACAGTCTCCGAGGAACCCCTTACGACGGCGTCTTCATCGCCCTCATTGTGGAGGAGCGTCACAAGCAGGACATCCTGGCCGGCGGGTTTGACGGCATGTACACCTACTTTGCTTCTAACGGCTTCTCCTTTGGATCTTCTCACCAGAACTGGAAGGTGATCAAAGCTTTTTGCGACAAGAACAACTTGCTGTTCGTGCCTAGCGCCGGACCTGGTTATATGGACACCGCCGTCCGGCCGTGGAACAATCACAACACGCGCAACCGGGTGAACGGACGATATTACGAGACCTCTTTGCAGGCAGCGATGTCCATAAGGCCTGATATCATCACAGTAACGTCGTTTAATGAGTGGCATGAAGGAACTCAGATTGAGAGGGCTGTGCCCAAGAAGACTGTGGCCCGTCTGTATTTGGACTACAAACCCCATCAGCCAGACCACTATCTAGAGCTCACCAGGAAGTGGGCAGAACATTTCAGCAAGGAGAAAGAGCAGTGGCTTATGTGATTGGACCTGTAACGTCTTAAAGTATTTTCACATGTTATTAACGTTATCAGCGTTACCGATTTAATGTTTCAATTTATGCATACACTTTAAAGGCAGCTAATTAGCAAGACAAGCCACCTTCTTTTTCGGTCTATCGATTGATTTACTTGCGGTTTCAATGCAAGTATTTACAAGAAATATCATCATTTTTGTGATTCGATTTGAAAACCCGTTTGCATCGGTCCACTCTCATTCAGTCAAGTGCGTATTTATACGTGGGACAGCCCGAGACATGTGAGAACCAAAGCCGTTTGGCATCAAACCAGGCTGGAAATGTCTTGATGTGCCATATTTGAGTGAATAGGCTAGGCTAATGCACAATTTTTATGGTATGCTTTaatggtttttggtttttttccccGTTTATTTTTTTGGACTCACTAGCATTTATCCTCATTCCCTGTCATCGCACGGAAAAGAGAAGTGTGAACATTGCGCTACATGCCTCCTTCGGGGTGAATTTGCAATTtttaactgttcctttaacattaGGCATTGAATCTGACTTCTGCTAGCAGCAACTGTGTGGCCTCGGTATTCAAAGACtacttttattgtgtgtttggatgacatttaaaaaatggctgGTGGTTGTGGATGTGGTTTGTTTGAATAATGACTGATTTATTATGTTAAGTAAATCCTAATTATGCATATTGTAACTcctgtttaatattaaacagtaaAAGGAAATCAA

Function

GO:

id name namespace
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016787 hydrolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191931 lncRNA downstream 997 2875628 ~ 2875927 (-) True G130006
TU191926 lncRNA downstream 16847 2859860 ~ 2860077 (-) True G130001
TU191923 lncRNA downstream 73320 2787203 ~ 2803604 (-) True G129998
TU191910 lncRNA downstream 123184 2753416 ~ 2753740 (-) True G129987
TU191856 lncRNA downstream 525435 2351278 ~ 2351489 (-) True G129943
TU191988 lncRNA upstream 6988 2891639 ~ 2892473 (-) True G130040
XR_006247100.1 lncRNA upstream 31811 2916462 ~ 2935657 (-) False LOC122324069
TU192000 lncRNA upstream 39358 2924009 ~ 2924386 (-) True G130049
TU192003 lncRNA upstream 43463 2928114 ~ 2928549 (-) True G130052
XR_006247099.1 lncRNA upstream 44744 2929395 ~ 2935657 (-) True LOC122324069
XM_043217207.1 mRNA downstream 125391 2742586 ~ 2751533 (-) False LOC122323398
XM_043217017.1 mRNA downstream 140794 2733736 ~ 2736130 (-) True stmn1a
XM_043217738.1 mRNA downstream 618490 2253838 ~ 2258434 (-) True cited4a
XM_043218164.1 mRNA downstream 815199 2060114 ~ 2061725 (-) True LOC122324005
XM_043217488.1 mRNA downstream 871890 1991179 ~ 2005034 (-) True ube2e1
XM_043217092.1 mRNA upstream 119341 3003992 ~ 3022358 (-) True oprd1a
XM_043217090.1 mRNA upstream 428738 3313389 ~ 3323828 (-) True LOC122323345
XM_043218439.1 mRNA upstream 478830 3363481 ~ 3379927 (-) True zdhhc18b
XM_043218438.1 mRNA upstream 478830 3363481 ~ 3379923 (-) False zdhhc18b
XM_043218437.1 mRNA upstream 478830 3363481 ~ 3379922 (-) False zdhhc18b
TU191925 other downstream 43968 2825344 ~ 2832956 (-) True G130000
TU191907 other downstream 125354 2740004 ~ 2751570 (-) True LOC122323398
XR_006247129.1 other downstream 557551 2319236 ~ 2319373 (-) True LOC122324259
XR_006247128.1 other downstream 557876 2318972 ~ 2319048 (-) True LOC122324258
XR_006247127.1 other downstream 558327 2318527 ~ 2318597 (-) True LOC122324257
TU191990 other upstream 23838 2908489 ~ 2911603 (-) True G130041
TU192049 other upstream 264503 3149154 ~ 3149789 (-) True G130083
TU192945 other upstream 1923446 4808097 ~ 4941832 (-) True G130696
TU193036 other upstream 2202593 5087244 ~ 5104353 (-) False LOC122323502
TU193037 other upstream 2202593 5087244 ~ 5222883 (-) True LOC122323502

Expression Profile