RNA id: XM_043217024.1


Basic Information

Item Value
RNA id XM_043217024.1
length 5299
RNA type mRNA
GC content 0.41
exon number 14
gene id LOC122323295
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 5407049 ~ 5424788 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTCAGACGAGACCCGCAGCGGATGAACCCGACCCCAGAAGACTCCGCACGACCCACACAGTCAGCTCATCAAGGAAAACTCTACTTCCTGCAACGAGGAGCGGAGAGAAAGCAGCTGCGCTTCAGGTATCGGATACACAGCTGGTGCCATGGCCTCAGAAAAGAGTCTCTCTGGGgaaactgaaacaaacacaccaaAGAGTGTGATTCAGAGAAAATCTCCTGAACCCAGCTGTATGTCTATAAAGAGTGACCAGTCATTAAGGATACCACCTAATTTCAGTGACACATATTATCCTGATAATGGAAGaaacaaaatggATGAACCAAAGTTAGAATCAAACTCTACTCAACAGGAGCAATTGGAGTCTATCTTTCAGAATCTTGAGCACAAAATCATTGCTCTGATGAAGAAAGAGCTGGAGATGTTCAAGAGAGTTCTTAGCCTAGACAACCCATCACGCTttgagagagaagaggaggatgaaggtCAAAACAAAGTCAGAGACGGGCTTCTGAAAATCACACTGAATGTCCTGAAAAAGATGAACCAGACAGACCTTGCTCTCACTCTACAGACCAGATTTGCccctttttatttgaaacaacaCAAATCCAGCCTAAATAAGAAATTTCAGATAATCAATGAAGGAATATCAAGTCAAGGAAACTCTGTATCGCTGCATGAGATCTACACAGAGCTGTACATCACAGAGGGAGGGAGTGGAGAAGTCAATAATGAACATGAGGTGAGACAGATTGAGACAGTATGCAGAAGACCAGAAAGACAGGGAACATCAATCAAATGCAATGACATATTTAGAACTTCACTTGGACAAAAAAGCCCCACCAGAACTGTGCTGACTAAAGGAGTcgctggaattggaaaaacaGTTTCAGTGCAGAAGTTCATTTTGGACTGGACTGAAGGAAAAGCAAAtcaggattttcattttatatttccacttcctttcagagAACTGAATTTGATAAAGCAGAGAAACCTAAGTTTGATGGAGcttctttgtaatttttttacacatataaATGAATTGGCATCAACAGATGTTGATAACTTTAAAATCCTGTttatctttgatggtctggatgaaTGTCGACTTTCTCTTGATTTTCTAAACAATCCGAGTTTGTCTGATGTGACAAAATCAGCCCCAGTGGATGTGCTGCTCACAAACCTCATCAAGGGGAATCTGCTTCCTTCTGCTCTCCTCTGGATCACTTCTCGGCCAGCAGCAGCCAGTCAGATCCCTCCTGAGTGTGTTGATCTGGTCACAGATGTACGAGGTTTCAATGATCCTCAGAAGGATGAATATTTCAGGAAGAAGGTAAATGATCTGTGTTTGGCCAGTAAAATCATCAGACACATCAAATCATCAAGAAGCCTGTacatcatgtgtcacatcccagtcttctgctggatttCAGCCACTGTTCTACAGACAATGATGGGTAACGCAGACAATACAGAGATCCCCAAGACTCTCACTCAAATGTTCATACACTTCCTGATCTTTCAGACCAAGCTAAAATCCCTGAAATATGATGGGAAATGTGATGCGGATCTTAAACAGGCTCGAAATAGCATCCTGTCACTGGGAAATCTGGCTTTTCAACAGCTGGAAAAGGGGAACCTGATCTTCTATGAGGAGGACCTGAAAGAATGTGGCATTGATGTCAAAGATGCATCAGTGTGTTCAGGAGTTTGTACCCAAATCTTTAGAGAGGAGTTTGGGCTGTACCTGGGGAAGGTGTACAGCTTTGTTCATCTGACAATCCAGGAGTTTATTGCGGCTTTATATgtgtttctttgctttttcaAACAAACAGGACATGTTAACATGTTTAGATCAACTTTGACTGATTTATTGAAAAGTGAAGTAGACAAGGCTTTAAAGAGTGAAAATGGACACCTTGATCTTTTTCTCAGATTCCTGCTGGGTCTCTCGCTGGAGTCCAACCACACTCTCTTACGAGGTCTATtgaaaaagacaagaaacaGACCTCTCAACAGACAAGAAATAGTTGAATACATTAAGATGAAGATCAGGGACAATTCCTCTTCAGAgaaatccatcaatctgttccACTGTCTCAATGAACTGAATGATCATTCTTTAGTGAAGGAAGTCCAAACATACCTAAGCCGCACAGGTACCAGTTGCCTTTCAACTGTCACACTCTCTCCTTCACAGTGGTCAGCTCTGGTGTTCGTGCTGCTGAACTCAGAAAAGAAACTGGATGAGTTTAAACTAAGCAAATATCATAATTCAGAGGAATGTCTTCTGAGGCTGCTACCAGTGATAAAAGCATCTTCAAAAGCAGATGTGAGTGGCTGTAATCTCACAGCAGAAAGCTGTTCAGCCCTGGCCCCAGTTCTCAGCTCCAATTCCTCAAGTCTGATGGATCTGGACATGAGTTACAATAAACTGCatgattcaggagtgaagctgctctctacTGGACTGAAGGATCCGAACTGTAATCTTAAGACCTTACAGCTGGAAGACTGCAGTATTGGAGAGAAGGGCTGTTCTGCACTGTtatcagctctgagatcaaacccctcacacctgataGAACTTAATTTGGGCTATAATAAATTAGGAGATAAAGGAGTGAAGTTGCTCTGTTGTCTACTGCAGGATCCATGCTGTCAACTGAAGACACTACGACTGCCTAGCTGCAGTATTGGAGAGGAAGGTTGCTCTGCTCTGGCATTAGTTCTGAAATCAAagccctcacacctgagagaactgaatCTCGGCTGTAATGAACCAGGAGAATTAGGattgaagctgctctctgatctGCTGCAGGAACCACAGTGTCAAATGGAGACACTGATACTTTCCAACTGTAGTATTGGAGAGAAAGCTTGTACTGTTCTGGTTTCAGCTTTGAAAttaaacccctcacacctgaaaGAACTAAATCTGAATTATAACGAACTaagagattcaggagtgaagctgctcgcTGATCTACTGCAGGATCCAAACTGTAAACTGGAATCACTACATGTGAGTCGCTGTAATCTCACAGAGAGAAGCTGTTCAGCTCTGGCCTCAGTTCTCAGCTCAAAATCCTCAAGTCTGACAAAGCTGAACCTGAGTTACAGCAGTCtacaggattcaggagtgaagacGCTCTGTGCTGGACTGAAAGATCATCACTGTAAACTACAGACATTGCAGCTGTGTAACTGCAGTATTGGAGAGAGAGGTTGTGCGGCTCTagcttcagctctgagatcaaacccctcacaGCTGAGAGAACTGGATCTGAACTACAACAAACTACAAGACTCGGGAGTGAAGCTGTTGTCTGTTTTACTTCAGGATCAACACTGTAAACTGGAGAAACTACAGATGTATAATTGTAGTATCGGAGAGGAAGGTTGCGCTGCTCTGATTTCTGCTCTGAGGTCAAGCACATCACAGCTGAAAGAACTGAGTCTCGGCTGTAACAAACTGGGAGATACAGAATTGAAACGGCTCAATGATCTACTGGAGGATCCACACTGTGAATTAAAGATACTAGATATCTTCTCTTCTCCTCTAATTTCTCCAAATGTCAAACACCAGCACTGACCCAGAAAATGCAAACAGTGAGTTGTGAACCACACCACAAGCAGAAAGTCAGGTTGTGTTTGTAATTCACCAGCAGACTAAGACAAAAGCGTACTTCAATTTTGACACGAACTCAAACTATTCTCCATTTTATAGGATACATGAATACAGACACTTGACACACTAAAAAGTTGGATCTTTGGTTAGTGTTGCATCTTAAATATGTCTTTGTACTAATTTAAACTAGAATGACATAATATTGCTCAACCACCTTACATAAGTCCTCATCAATGTCAGcttcttttgttgttgtagtttgTTGTTTATCCGTCTCATTTTCTTCATAGCTGAAGGGTCAAGTGCGAGCTAAGCATGCTTTGTATGACTCAGGATGTTATGTCATGCACACTGTAAGCATACTCTGGCAAATGCATAAAATCCAAAATGTACTTTGGCCTTGAGATAGAGATAAGGCAGGATCACCATGGAATGAGAGCTTTTTATTTAGGACATACTTTGGTCTCATGGTCTGCCACAATTTTGGTACAAGGAAAGAACAAAAACCTGAAGTATGTGgaggaattaaattaaatggattATTCTCTTCAACCTTCATCTTGGCGATCCTGTTGTGTGTACATAGCACAGAGACTGTTACAGTTACCATCAGTATACTGAATGTAAGACATTAgcattaaatgtacatatttttttcaaaaagcatGGCCAGATGTTTCCTTTCTTGCAATCTTAGTCACCTGCACTTTCTCTGCCAGCAAAGTCACTTACAATACCTTTCTCTGTCAGTAATTTCACTTGCGATATCTTCATTCTCCACTCACTTTAAAACCAatttatttggtttgtttttgttgagtgCAAATTAATATTGgcaattatatcatattatattatattatgacatCTTCATCGGAGGATTTGCAGAAATCAAGCCTGGAGGCAGaccttattaaaataataaccagTCCTTGAAATAGTCTTTAACAACATAATTCTGCCCTGGATACATTTGATGCGGTGCGTTTCATCAGATGACCGCCCCACATTTCTCTAAATCGCATAACGATGAGCACCATGTTATGAGATATGGCCATTTTTAGAAGAATAAAGATCACAACCATCATGTTTTACTGTCATGAAAGGACAAAAAGCTATTTAATGTTGAAGATGAAgtgttgaagtgaagtgaatAGCTTACCCCTAAAAACAGAATTCAGTATTCCCAAATGAGAGAGTTGTGTGCCCTCGTAATTATTCCTAGTTGAAGATAAAACTACTGTACAAGGACCAAGTCAGGCGTGATGCACTCTTCCACTAGAGAGCAGTATAATACTGATAACCCTGCTGATAAAGAACAGTAAACCAATCTTTACATTCATAACGCCAGTGGTTAAATGAGAGAATTTCAATCACCATGGgagtaatttgtaatttaacatttacatttgttaaaaccCCAGTGTAACTAGGCCCAAAGGTATTATTAATGTGCTGTAATATTATATCTATGCCTCACATACTTGATTGATTTGTCAATGTAACATCATTTAACTGTTGAATGAAgattgatttatattatattgttgcaTTGTGACTTTATTTTCGAGACCGTGAACacaggtttgtttgtgtgtttggtaAACACCTAAATGCTGGTCAGCCCCAGTATTGCCAATAAAGGAGGTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192888 lncRNA upstream 1487 5404453 ~ 5405566 (+) True G130664
TU192908 lncRNA upstream 20936 5382816 ~ 5386117 (+) True G130676
TU192909 lncRNA upstream 21505 5385136 ~ 5385548 (+) True G130677
TU192890 lncRNA upstream 49959 5356870 ~ 5357094 (+) True G130665
TU192873 lncRNA upstream 179440 5226723 ~ 5227613 (+) False LOC122324077
TU193148 lncRNA downstream 78478 5503266 ~ 5505414 (+) True G130813
TU193185 lncRNA downstream 123719 5548507 ~ 5548799 (+) True G130833
TU193190 lncRNA downstream 140592 5565380 ~ 5587515 (+) True G130835
TU193218 lncRNA downstream 186200 5610988 ~ 5612338 (+) True LOC122324017
XR_006247088.1 lncRNA downstream 186324 5611112 ~ 5611964 (+) False LOC122324017
XM_043218387.1 mRNA upstream 53793 5344211 ~ 5353260 (+) True si:dkeyp-92c9.2
XM_043217006.1 mRNA upstream 64339 5330425 ~ 5342714 (+) True thbs3b
XM_043218374.1 mRNA upstream 78053 5316918 ~ 5329000 (+) False mtx1b
XM_043218376.1 mRNA upstream 78053 5316946 ~ 5329000 (+) True mtx1b
XM_043217236.1 mRNA upstream 115255 5288167 ~ 5291798 (+) True polr3gla
XM_043218181.1 mRNA downstream 46994 5471782 ~ 5483668 (+) True si:ch211-195b13.1
XM_043218180.1 mRNA downstream 53098 5477886 ~ 5483668 (+) False si:ch211-195b13.1
XM_043217321.1 mRNA downstream 60134 5484922 ~ 5500596 (+) True eya3
XM_043217323.1 mRNA downstream 60152 5484940 ~ 5500596 (+) False eya3
XM_043217322.1 mRNA downstream 60152 5484940 ~ 5500596 (+) False eya3
TU192862 other upstream 92875 5223700 ~ 5314178 (+) True G130640
TU192863 other upstream 92875 5223700 ~ 5314178 (+) False G130640
TU192837 other upstream 227376 5176275 ~ 5179677 (+) True LOC122323259
TU192857 other upstream 243654 5162586 ~ 5163399 (+) True G130637
TU192810 other upstream 423809 4977885 ~ 4983244 (+) True G130613
XR_006247105.1 other downstream 158717 5583505 ~ 5585655 (+) False LOC122324139
XR_006246984.1 other downstream 321013 5745801 ~ 5752782 (+) True LOC122323254
TU193273 other downstream 360342 5785130 ~ 5922973 (+) False LOC122323983
TU193467 other downstream 1038295 6463083 ~ 6488760 (+) True G131047
TU193457 other downstream 1095132 6519920 ~ 6526080 (+) True G131042

Expression Profile