RNA id: XM_043217030.1


Basic Information

Item Value
RNA id XM_043217030.1
length 3862
RNA type mRNA
GC content 0.48
exon number 18
gene id phf14
representative False

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 737022 ~ 810882 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AATGTCGTAGATGTAACACGCAGAACATGAGCTGAGGAGGCGTTCGTTGTACCTTTGTCCAAGCTATCCAAACGCGAAAATCCCACAAATGGATCGGGGGTCGAAGCGGAGGCAGGTGAAGCCTTTGGCTGACTCCTTGTTGGACGTTCTGGATTATGACAGCTCAGATGACAGTGATTTTGAAGTTGGAGATGCGtcagGTTCAGAGGGCACTGGCAATGGGAGTGATGAGGAGTGTTCAAAAGACAGTGCCGCAGGCTCTGAGAGCGACTCAGATGCTGTTGGCTCAGCTGATGAAGAGGGCATAGATGACGAAGAGGCCAAAGAATTAAATGAAGACACCGAAGAAGAGGAGAAAGCCAAGGAGCAGTCTTTTTCGGAGGAGACCAGCAGCAAAGAAGCAGGAGGAACCTCCAAGAACCgcaaaaaaggagaaaaatccTCAGATACAGAACCAAATGGTACTGGAACCGCAGAGGAAAGCTCAGCAGAGCCAAAAAAATGGAACCTACGGCGTAACCGGCCCATGCTGGACTTCACTACAATGGAAGAGCTAAATGAAATGGATGATTATGACAGCGAGGATGACAATGACTGGAGGCCCACacaaggaaaaaagaaaggtaaGGCTTCATCCGGGAAGGAGAAAGAAGGgagcgaggaagaggaggacggGGGCAGTGACGAAGAGGACAATGAGGACGACGACAATGAGACCAGTAGTAGTGACAGtgaggaggaagagaagaaatcaAAGAGGAAAGCAGGCAAGAGCACAGGGGCGTTTGATGAGGAGGAGACCAATGACAGCCACAGCACGTCACATGGGAAGGGCAATGAGGACTCTCTTTTGGAACGTCCCCAGACCTGGAGCTCCCAACGGATGGAGCATATTCTTATCTGCTGCGTGTGTCTGGGAGACAACAGTGAAGATGCGGATGAGATCATCCAGTGTGACAACTGTGGCGTGACCGTGCATGAAGGTTGTTATGGTGTCGATGGTGAAAGTGACTCCATCATGAGCTCGGCCTCGGAGAACTCGACAGAACCGTGGTTCTGTGACGCATGCAAGAACGGCGTCAGACCCAGCTGCGAACTCTGTCCCAGTCAGGACGGCATCTTTAAAGAAACCGATGCGGGGAGGTGGGTGCACGTGGTGTGTGCCCTTTACGTTCCAGGAGTTGCGTTTGGAGACATTGACAAGCTGCGGCCTGTAACGCTCACAGAGATGAACTACTCAAAGTATGGAGCAAAGGAGTGCAGTTTGTGCGAAGACGCACGCTTTGCTCGAACAGGTGTTTGCATCAGCTGTGATGCCGGGATGTGTCGCTCATTCTTCCACGTTACGTGTGCTCAACGAGAAGGGCTGCTGTCTGAAGCTGCTGCAGAGGAGGACATTGCAGATCCATTCTTTGCCTACTGCAAGCAGCACGCAGACCGCTTTGACAGGAAATGGAAAAGGAAGAACTATCTGGCCCTGCAGTCCTACTGCAAAGTGTCTTTGCAGGAAAGGGAGAAGCAGCTGACACCTGAAGCTCAGGCTCGAATAACCACTCGGCTCCAGCAGTACAGAGCGAAAGCAGAGCTGTCTCGAAACACTCGGCCTCAAGCGTGGGTGCCACGGGAGAAGCTTCCCCGGCCACTCACCTCTAGTGCTTCAGCCATCCGTAAGCTAATGCGGAAAGCAGAGCTCATGGGTATCAGCACAGACATCTTCCCCGTGGACACCTCCGATACCAGTGCGAGCGTGGATGGACGACGTAAACATAAGCAGCCTGCACTCACGGCAGACTTTGTCAACTACTACCTAGAGCGGAACATGAGGATGATTCAGATCCAGGACAACATTGTGGAGCAGAAGAACCTTAAAGACAAGCTGGAGACGGAGCAGGAGAAGCTGCACTTGGAGTACAACAAGCTGTGCGAGTCTCTGGAGGACCTGCAGAATGTCAATGGCCAGCTGAGGACTGAGGGCCAAGCCATATGGAGCATGATGGGGGGGATCCTTGGACAGAAATTGAACTCTCCTGCAGTTCTGAAAGCTCCCAAAGAGAGAAAGCCAAGCAAGAAGGAAGGAGGATCACCAGGGAAGTCATCAAACCTACCAGCTATGCTTTACAGCTGTGGGATCTGTAAGAAAAACCAGGACCAGCATCTTTTACTGCTATGTGACACCTGTAAGCTGCATTACCACCTGGGCTGCCTAGATCCTCCTCTCACACGCATGCCGAAGAAGACCAAAAACAGCTACTGGCAGTGCTCTGAGTGCGACCAGGCCAGCAGTGATGAGGCTGACATCGCCATGGAGACGCTACCAGATGGAACCAAAAGGTCTAGGAGGCAGATCAAGGGACCAATCAAATTCATCCCTCAAGAAATGAGCCCAGAGCCCAAGAAGCTTCAAGTGAGAGGGACTAGAACCAGAGgacagaagagaaagagaacgtCCATCTGCGAAGAAGAAAAGATCGAGGAACCCTCGCCGCGGGAGCGCAGACAGAGGCAGTCGACTCTGCAGAAAAAGCCCAAAGCCGATGACACACGGACCGAGTGCACCACCTGCAAGGGCCCCGGCGACAATGAAAACCTAGTGAGGTGTGATGAGTGTCAGCTCTGTTACCACTTCGGCTGTCTGGACCCTCCCCTGAAGAAGTCTCCCAAACAAACCGGCTATGGATGGATCTGTCAAGAATGTGACACCTCTTCATCAAAGgaggAAGAACCACAAGAGGTTGAGGATGGGTCTGTGAAAGAGGAAAGGACTGAAGAGGAGATCCCTGTCTGAAAAGCTCTCAATATTACCTCACATGAAGTAACCGTCTCGTCTACACAGTCAGCACCGTCACCTCATTTCCTGCCGAGTAGCGGGATGCGAAATAACTCACAAATTAAATCAACAGACGTGAACTGCCACTGCTTCACCAGACTGAAattttcctcctcctccgttTACCAGAAAAATGACCACAATTGCCAGCTTAAAATGCCAATGCTGTGATccctatatattttttcaaagacTCGATGTATGTTCAAGTCCACCGTCATGAATGCTGCCGCTGATCATGATCTGCACATGAGCTTGTTTCTACTTTAAATATCCTGTATATCCGGTCaaagttatttttcataaacTAACTGATGTTTCCCATGACTCATAGGATGAGAACATGGCGTCCAGAGATTACTCGAGCAGTGTTTctgatgctatttttttatatacggAGACCGCACACTATTCGTTCCTGTCCCACAAGCACCCTCTTTGATTAACagctttataatatatattttttttaatttcatatttttaaacaccAATGCATTACACGCGTATGAACTGGCATCGACCGTAAAACTGACAGCGGCTTGTGTTATAGAAGTAATTCATTTCTTCCTGATGAAAGAGCAAagtctattttattattttttacggATCTCATTTTTATAACGACAGTATATAGCAGAAGATCAGTTATCATTGACAGTGTTGTTGTCTGCGCTCATGTTTGAAGCATTATTTCAGTGTAAAGCAGTGGGACGATTCATCCGCCTCAATGCTCGAGTTCAACACAAATCTGTATTTAGgtactttaaaaagaaaaaaatgtgacctTCGTAATAAACAATACTTgtgaatttgtttattattattatttcttgttATTGAGGCTAAACAACGGTACTGTAACTATTCAGATGTCAATCAAGATAAAGTGCACTCAAGATCTCAAGAAAGAGCCGTTCTCCGGGACTAAAGTGCACTTTCCACAAATAGAGTTTGAAATAGCACTAACTGCTTTTTTTCGTTCTTTCTATTTTCGAATGGTCACTGAAAGACGACAATTAAACGtcgatcgtg

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191441 lncRNA downstream 14711 719320 ~ 722311 (-) True G129635
TU191421 lncRNA downstream 199219 521875 ~ 537803 (-) True G129618
XR_006247109.1 lncRNA upstream 52407 863289 ~ 894898 (-) True LOC122324168
TU191502 lncRNA upstream 240626 1051508 ~ 1052061 (-) False thsd7aa
TU191556 lncRNA upstream 445663 1256545 ~ 1258314 (-) True G129714
TU191559 lncRNA upstream 461342 1272224 ~ 1272429 (-) True G129717
TU191579 lncRNA upstream 481749 1292631 ~ 1293279 (-) True G129728
XM_043218160.1 mRNA downstream 31349 688221 ~ 705673 (-) True col9a2
XM_043218235.1 mRNA upstream 112004 922886 ~ 955788 (-) False nxph1
XM_043218236.1 mRNA upstream 112004 922886 ~ 950300 (-) True nxph1
XM_043217894.1 mRNA upstream 148561 959443 ~ 993648 (-) True LOC122323800
XM_043217895.1 mRNA upstream 206273 1017155 ~ 1052124 (-) True thsd7aa
XM_043216996.1 mRNA upstream 261269 1072151 ~ 1094903 (-) False LOC122323272
XR_006246987.1 other upstream 261269 1072151 ~ 1094903 (-) False LOC122323272
XR_006246986.1 other upstream 261269 1072151 ~ 1094903 (-) True LOC122323272
TU191551 other upstream 468030 1278912 ~ 1280462 (-) False smim12
TU191574 other upstream 473005 1283887 ~ 1286640 (-) False pef1
TU191589 other upstream 687806 1498688 ~ 1499406 (-) True G129738

Expression Profile