RNA id: XM_043217040.1


Basic Information

Item Value
RNA id XM_043217040.1
length 3984
RNA type mRNA
GC content 0.43
exon number 17
gene id sacm1la
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 6494491 ~ 6508430 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAGTCCCTAACCTCAACTTTCAGTTTATTGCTGATGTTTGTGACACCTTGAGTAGAAAGTGGGCTAGAAATGTCATTCGTTGTTTGATCAGTTGCCCAGTGCGTCTCTAAATCAATACTGAAAGGTTTCCTTCTCTGAAGTTTTTGCCTCTCTCAGTTTTCCATTTACAGTTTACTCAGAAGTGCTGTAAGAACAACGCAGCAGATTCACCCTCGGCTTGTAAAATTGGGTGTACTCATACAGTAAATTTTTCATTTGAGCCCACGCTCCAAGCGCAGTGATATCTCATTACAGTGTTGTATACTTGCTGCATTATTTAGCGAGGATAAGACTTCGGCTGAAATGGCCTTGGATGCAGCCCGTGAGTAGGCCAGTATTGGACACAGGAAGTGTTTTGAGTTGAAACAAGTACATGGGAGGCTTGACTGCAAACAACTAGATCATTGAAGCACTCCAGACTTCTCTACTCTTGTCAGAAGTTTCAATATGCAGGACAACAAGACGTTTCTGTCAATGCTCAGCAATGTCCTCAACACAGACGGTTTCTACTTCTGCACGGACTACGACCTGACCCACACCCAGCAGCGTCTGTCCAACACGAGCCCGGACTTCCAGGAGATGAGCCTGCTGGAGAGGGCAGACCAGAGATTTGTGTGGAATGGAAACCTTTTAAGAGAAATAACCGCACAGCCCGAGCTCCATAAATTTGCATTTCCTGTCATCCACGGATTTATTGTGATGAAGCCTTGCTGCATCAATGGGAAGGTGTTTGAGTGGATCCTCATCTCGAGACGGAGCTGTTTCAGAGCGGGGGTCCGATACTATGTCAGAGGCATTGACTCTGAAGGCCATGCTGCTAACTTCGTTGAGACTGAACAGATAGTCCAGTACAGTAATGCCCGGGCGTCCTTTGTGCAGACTCGAGGCTCCATGCCCTTTTTCTGGTCTCAAAGACCCAACCTGAGGTACAAACCCAAGCCACAGATAAGCGCTGACACCAATCACATGGATGGATTCAGGAGGCATTTTGAGACGCAGGTTCTCATTTATGGCAAACAGGTTATTCTAAATCTGGTTAATCAGAAAGGATCTGAACTGCCTCTTGAGCAGGCCTTCGCCAAAATGGTCAATGGCATGGAGAACGGATTTATCAAGTACATCGCCTTCGACTTTCACAAGGAATGCAGTAAGATGAGATGGCATCGCCTCCAGATTCTTGTCGATGGTGTTTCTGACATGCAAGATGAGTTTGGGTATTTCATGGTGAGCTCAGACGGCAAGGTGACATCCGAGCAGTCTGGAACCTTTCGCAGTAACTGTATGGACTGTCTGGACCGTACCAACGTCATTCAGAGCCTGCTGGCCAGACGCTCCCTACAGAGCCAGCTACAGAGAATGGGTGTCCTCCACGTAGGCCAGAAAATTGAGGAACAGGCTGATTTTGAGAAGATTTATAAGAACGcGTGGGCAGACAACGCCAATGCTTGTGCTAAACAGTACGCAGGAACTGGGGCACTGAAAACCGACTTCACCAGaaCCGGGAAGAGGACTCACTGGGGATTGGTAATGGACGGCTGGAACTCGATGATCCGTTACTACAAGAACAATTTCTCAGACGGGTTCAGACAAGACTCCATCGATCTCTTCCTCGGAAACTATACGGTAGATGAAACCGATGGCTTGACGCCTCTGCACATGCAGAAGGACTGGAAGTTCCTCTTGCTTCCTGTTATTATGGTGGTGGCCTTCTCCATGTGCATCATTTGTCTCCTAATGGCTGGTGACACTTGGACGGAGACCCTGGCTTACGTGTTGTTCTGGGGAATGGCCAGTGCTCTTACGGCTGCTTTCATCGTGTTCAATGGACGGGAGTTTGTAGACGCACCCAAACTGGTTCAAAAGGAGAAGATGGATTGAATATCAAGTCCTCCTTCCCTATGTTCTCTCTGTTTCCTCTTTATTTTCCTCCAGTACTGTCCTCCTCTCCACACTGTCCTTAAACTTAAGCAAAGCAAGCATCCCTGTTTCCTGCTCCCAAAGAGGGAGCATATTACCATATCGTTTCACATCAGTCGCTACAAATGTCCTACAAATGTCCTTTGAATCATGGGACACGGTGTCCAAACTTCTCAAAATTCCCTTAACAGTAATACTTGCATCATAGAATTGCACAAAATCCCCACTCTGTAAGTGCTTACTTTACCGCTACTGTTTGGCAATCGATCTAAATCGACCCGTTGTGAAATCAGAGCAATTGTGTTGGCTCTAGAGCTTCTGCTTCATGATATTGGACACCAGGCGTGCGCCCATGGGCCCAGTCTATGGGCTGACAGATCAATGGAGGTCTATTGTAATTAGATTGTTGCACAAGAGAACATTACATGATATTTCAGTGGCTCACCCCTTGGTTACTTCCATTTCTGTCCTCTCAAATCTGTGCTGAAATCAGCCTTATGCctcagttttattttcagttgttcttTGCAGTGGCAGTTTGGGTTTTAATGTGGTTTCCTTTTGTTCTGCCAGCATATTTATGGGTTTGTGTCTCTCGTAAATGATCAAATTAGACAGCTGTGGGACGCACTGGGGGAGAGAGAGTGGTATTAAGCACTGTTTCTTTATgagtttacagaaaaatatgagCTGCACTTTTCCTGCGTAACTTCTTTATGTCTCTTCGAAGACCAATGAACACTAACAGATACGGCACGCATAAAGTCGCCCTGTAATGGCTCTTCGACTGCACATCTCTTCAACGTTACCAATTCAGTGGCAGTTCATTAGACGCAAATAGACTAGTATCAGAATAGCTGTCAAATTGACTCGCGCTTTTAATTGAATTCCCTTAAACTGTACTGACAATTCAGAAGGCATTAGCttttaactaaattatttaGACAAGTGGCTTTCAAGTACGCCgtatagcagaaaaaaaatgtcagttttattgATGTTCACTTGCATGATGGTGCGTTTCAAAAGGCCTTACCTCTACCCCGCCGGTTTCCTTTCGTTTTGACACATTTAGCAAGGTGTTTTTGGGATCGGGAGGGGACGCTGATGGATAAATTGCTTTTAGGACTTCCTTTTGAACGCGTTAGTACTTTTAGAACTGAATGCTCATCGGTTTGGTTTAATGCTGACGAAGAATGTAGCTTTCGATGCCTTTATACGCGGGTGTTTTGTAGTCCTCTGCAAAGCTACAGTGGTAACAGTCATTGCAACAGGCGATTGCAAATGAAAGTTTcatcaaattcatattttattgattCTCTTTGTGTGCAAAGAACACCTTGGAATTAAAAGGAACGGACGTAAACAGAACACTGATAACTAAATCCTGTACGTTTGATGTTTACCTGTATAAATCTGATGTGTAAACTGTACATTGGGAAGAAATGaagaatttataaatatatatacgagTGTGTTATTGTAATCATGTACTGTACAGTGTAGTTTACAACAACATAGCTTTAGCACTTTCTGGTTGAATTATTGATCAATCAAAGTGATGTTACTGATCACATTCTTCCATCACAGGGCTTGATGAATATGGCTTTCATTAACCCTAGGTTATGAACTGCATCGTATTTCCAGGGTGCATTTGGGTTGAAGTGTGTTAAATGACATGTCATCaatattaattgtgtttttggaCTTGATCCTGACGGTGTTTTAAAACCTTCTCTCGTCTTGTTTGATTAAGAGCCTCAAGATTACAGCTGCATTTCTGATTACCGCGCTCGTTCAGAAGTATTCAGCACTCGCCCGTGATTTCAAGGGAATAGTTTGTGAAACATCAGTTGTCTTTAGTGGTCTACCAGTCCTTTATCAGTCTGAATGAAAACCGCACTGCAATCTCGGTATTGTTTGGTTTTGATCATTGAGGTGTCatttaatactatttaaaagacatttcaacCACTGTAACCCATGGTTTCTTAATGAAATCGTGTTTAATAAATTCTACCAATAAAA

Function

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016791 phosphatase activity molecular_function

KEGG:

id description
K21797 SAC1, SACM1L; phosphatidylinositol 4-phosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193555 lncRNA downstream 54409 6438205 ~ 6440082 (-) True G131114
TU193399 lncRNA downstream 139016 6354956 ~ 6355475 (-) True G130999
TU193381 lncRNA downstream 201225 6248351 ~ 6293266 (-) True G130982
TU193376 lncRNA downstream 258214 6234044 ~ 6236277 (-) True G130978
TU193371 lncRNA downstream 296130 6198125 ~ 6198361 (-) True G130973
TU193661 lncRNA upstream 190138 6693892 ~ 6701605 (-) True G131153
TU193666 lncRNA upstream 190138 6693892 ~ 6701605 (-) False G131153
TU193656 lncRNA upstream 198570 6702324 ~ 6704443 (-) False G131153
TU193657 lncRNA upstream 198570 6702324 ~ 6704443 (-) False G131153
XR_006247006.1 lncRNA upstream 198729 6702483 ~ 6707103 (-) False LOC122323439
XM_043217042.1 mRNA downstream 295 6485917 ~ 6494196 (-) True LOC122323303
XM_043217041.1 mRNA downstream 745 6485917 ~ 6493746 (-) False LOC122323303
XM_043217043.1 mRNA downstream 10392 6478516 ~ 6484099 (-) False LOC122323305
XM_043217044.1 mRNA downstream 10533 6478516 ~ 6483958 (-) True LOC122323305
XM_043218028.1 mRNA downstream 20940 6456092 ~ 6473551 (-) True skiv2l
XM_043217550.1 mRNA upstream 16112 6519866 ~ 6625054 (-) False gabbr1b
XM_043217549.1 mRNA upstream 16112 6519866 ~ 6625054 (-) False gabbr1b
XM_043217551.1 mRNA upstream 16112 6519866 ~ 6621605 (-) True gabbr1b
XM_043217560.1 mRNA upstream 123844 6627598 ~ 6639059 (-) True sh3bp5lb
XM_043217557.1 mRNA upstream 136255 6640009 ~ 6648242 (-) True gtf2h4
TU193406 other downstream 131319 6362347 ~ 6363172 (-) True G131006
XR_006247124.1 other downstream 1089273 5405086 ~ 5405218 (-) False LOC122324254
XR_006247125.1 other downstream 1089591 5404769 ~ 5404900 (-) True LOC122324255
TU193049 other downstream 1234327 5141505 ~ 5260164 (-) False G130744
TU193577 other upstream 127435 6631189 ~ 6639220 (-) False sh3bp5lb
TU193649 other upstream 144684 6648438 ~ 6649389 (-) True polr1h
XR_006247130.1 other upstream 199569 6703323 ~ 6703389 (-) True LOC122324260
XR_006247131.1 other upstream 200117 6703871 ~ 6703937 (-) True LOC122324261
TU193894 other upstream 852867 7356621 ~ 7360111 (-) True LOC122323893

Expression Profile