RNA id: XM_043217043.1


Basic Information

Item Value
RNA id XM_043217043.1
length 2195
RNA type mRNA
GC content 0.48
exon number 5
gene id LOC122323305
representative False

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 6478516 ~ 6484099 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACGAGCCCCCCTTCTGCCGCTTTAAATCCCTCGGGGTCCCAAAGCCGAGAATTAAAACCACCGCTTTATTGTTGTCCAAAGAGGGCTTTTATTCTGAAACTCGCCTTTTGTATTCAGTGTTTCTTGGTGCTGCATATTGTATGGATTTCAGCGTCTTCTGTACATTGAAGGTCTTCCCAGCAGCGACTGTATGGTTTTGAGATCTAGAGCTGCAAGGAGTCATTGATGCTCAAGAGCTAGGGTACACTTTAGTGAAGTCATGGATGTGGATGTGGTGAGTTTTCGTTTGCCTGGGCACGGAGACACCGCCCTGAGTAACATGAACTTCCTGCGGACGCAGCAGCACTTCTGTGATGTCACCATTGTGGCGGGAGGCCGGCGCATGTTCAGGGGTCACAAGGTCGTGCTGGCCGCTTGCTCTGTTTTTCTCAGGGACCAGTTTCTCATGAACCCCTCATCGGAGCTACAGCAGGTGTCAATGTTGCACAGCTCAGCGGTGGTATGTGAGCTCCTCCAGTCCTGTTATACAGGGATGCTGCAGTTCAGTGCCAAAGAGATTGTCAACTACCTGACTGCAGCCAGCTACCTGCAGATGGAGCATGTGGTGGAGAAGTGCAGAGGAGCCCTGAGCCAGTACATGCAGCCCCGGAGCTGCAGCCCACTTGTGAACATCTCAACCTCAAACAAGTCTATTCAGACTATGAAATCGGAAGACTATTCGTCTATGCCAGTGATTGTCAGTGTCAGAGGATCAGATGCATCTGGTCAATTCGAGGAAGGGGACGGGCCTGAGGATGACATAATTCAGGTGCAGATCTATGATGAACATCAGGACCAAGAGAAGCTCTCTGGTGCTGAGGAGGAAGACAGAGAAGCTGTTGTTGTGTTGGATGACCACAGTCAGCTGGACGCAGGAATAGAGGAGGCCAATATGGATGGTCGAGCCAAAGGAAACGGCATCAGAGGGACGGGTCGCATGTGGAGACGACGGCACGGAGAGCACAGGGGAAGAGGCTTTAAACACCGGAAACGATACGTATTCAAAGACCGCAAGCTTATGGGTAACTATCAGGATTATCAGGAGCACCTTCCAacacaagatgagacaatgGGTAATTTTGGAGAAGACTTTCAGGCAGATTTTAAGTCCAATCAGAATCTCACAGATCGTTCTGTCTTTGCTGAGTACAGGCCTGGAGAGGGACAAGGAGAAGAGATTGGCTCCGATGGAGGTCCTGCACACTTTGGTGTGGGAGCTTCCAGCGGGGAAGATGGAATGGGAGTCGGGACACATACAAATGAACACGGAGCTGCTGACGAGTCCGTGGCGGTGGTGGGATCCACGTCCTGCGTAGCGGGACCAGTAGTGTGCGAGCAGTGCGGACTAGCCCTTTGCTCATTGCAGGACTTAGCCATGCATTCCCTGTCAACACACCGGCTGTATGTGTGTCCGTGCTGCGGGAAGCACTTCAGTCACTTTAATATCCTCAACCGTCACATGATCGTCCACCGCGGAGTATCCAAGCTCCACTGCTGCCCCCTGTGCCACAAGACCTTCACTCAGAAGTCAACACTATATGACCACATAAATGTGCACAGTGGGGAGCGGCCATATGTATGTGCATACTGCCAAGTCAGCTTTGCCCACAGGTCTGCTCTGCGTCGTCACCTGATGGAGCAACACGGAAAAACCATGCCCCAAAACCACATGGAGATGCAGCAAAACAATGACGGTGGTGTTGGGCTAGGGTTTAAATCACATCTGAATAGGTAAAGTAGGTGTTATAATGAAAATTatcctttttttcattatatacgtttatatttgtattttgcacAGCCatgaaaatgtctttgaaatGGATAATTACTATGCATTTGAACTCTACAGCCTGGAGTGAATGAATGACTGATTATACAGTTAAATAGCTTGCCTAAAAAGTTTATTCTGTCGTGATTTGTCCACCCTAATGTTATGATAAAACCTTTGACTTTCTCCTCTGACTTCTCTGAACAcagaataatataatttaactgtttttgtccaaacaataaaaaaatagagtCCAAACTATAGTGGCTCTACTGCTATGTATAAAGGTACCTGTTGAGAATTACTGCATGCTACACCTCTGTCAGTGCCTTCGGTCCAGCTGTGGTTTTTCATAGATATTTTGCcccattaaagggatag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193555 lncRNA downstream 38434 6438205 ~ 6440082 (-) True G131114
TU193399 lncRNA downstream 123041 6354956 ~ 6355475 (-) True G130999
TU193381 lncRNA downstream 185250 6248351 ~ 6293266 (-) True G130982
TU193376 lncRNA downstream 242239 6234044 ~ 6236277 (-) True G130978
TU193371 lncRNA downstream 280155 6198125 ~ 6198361 (-) True G130973
TU193661 lncRNA upstream 209793 6693892 ~ 6701605 (-) True G131153
TU193666 lncRNA upstream 209793 6693892 ~ 6701605 (-) False G131153
TU193656 lncRNA upstream 218225 6702324 ~ 6704443 (-) False G131153
TU193657 lncRNA upstream 218225 6702324 ~ 6704443 (-) False G131153
XR_006247006.1 lncRNA upstream 218384 6702483 ~ 6707103 (-) False LOC122323439
XM_043218028.1 mRNA downstream 4965 6456092 ~ 6473551 (-) True skiv2l
XM_043217351.1 mRNA downstream 22894 6447348 ~ 6455622 (-) True prrt1
XM_043217345.1 mRNA downstream 45118 6429635 ~ 6433398 (-) True LOC122323486
XM_043217344.1 mRNA downstream 49025 6425467 ~ 6429491 (-) True LOC122323484
XM_043217306.1 mRNA downstream 63353 6395759 ~ 6415163 (-) True prrc2a
XM_043217042.1 mRNA upstream 1818 6485917 ~ 6494196 (-) True LOC122323303
XM_043217041.1 mRNA upstream 1818 6485917 ~ 6493746 (-) False LOC122323303
XM_043217039.1 mRNA upstream 10392 6494491 ~ 6508430 (-) False sacm1la
XM_043217040.1 mRNA upstream 10392 6494491 ~ 6503754 (-) True sacm1la
XM_043217550.1 mRNA upstream 35767 6519866 ~ 6625054 (-) False gabbr1b
TU193406 other downstream 115344 6362347 ~ 6363172 (-) True G131006
XR_006247124.1 other downstream 1073298 5405086 ~ 5405218 (-) False LOC122324254
XR_006247125.1 other downstream 1073616 5404769 ~ 5404900 (-) True LOC122324255
TU193049 other downstream 1218352 5141505 ~ 5260164 (-) False G130744
TU193577 other upstream 147090 6631189 ~ 6639220 (-) False sh3bp5lb
TU193649 other upstream 164339 6648438 ~ 6649389 (-) True polr1h
XR_006247130.1 other upstream 219224 6703323 ~ 6703389 (-) True LOC122324260
XR_006247131.1 other upstream 219772 6703871 ~ 6703937 (-) True LOC122324261
TU193894 other upstream 872522 7356621 ~ 7360111 (-) True LOC122323893

Expression Profile