RNA id: XM_043217070.1


Basic Information

Item Value
RNA id XM_043217070.1
length 5822
RNA type mRNA
GC content 0.38
exon number 37
gene id LOC122323324
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 18190993 ~ 18220415 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTTTGACAGATAAGATGGGTTCATCACTAGATGAAGAAAGCTCACTTGCAGCCAGCGAGGTTGACATTGTGTCAGCTGTAAATTCTCTTCAGGTGTCAGACACACCGAGACCAGACGGCATCCCCGTTTCCTTCTATAAAGACAACATTCAGGATTTAATTCCACACTTAAAGATGCTTTATGAAAGAATCCACAGAGGTGCGTTTAACTGCTCTGAGAAGCACTTTAATGAAACTGTGAAAAGTCCACATGACAATAGTCAACAATTCTTTAACGTTGACTACCTCATCATTGCAACTATTCTAGCAAGAAGTTTAGAAGATGTCATGGCGTCTCTTCCAAAGGGGAGAATACTGAAAGATTCAGCAACTCTTATGATCATTCCCAAAACACATTATGCTTTAATAAGTTTAAGTCATGTTAAGGATGaactgaaacaacaaaaacagtccAACCCAACTCTGAGCCAAGATCTTGTCATTATAGAAAACCTTCTCAGTGACGCAAACCAAGATTTTTCAGTTGAGAAATACAAAGTGCTGCATCAGGCCTGCCCTTTGACCACAGAACTCATTACACTGGCTCTAAAAAGCTATGGCTCACAGATATTTGGACATTTAGAAAACGTTggggtttttattttcaaacaaagtGTGATAGTTTGCTTTCAACCCGAGGATCTAGATAAAGTCAAAGCTACTATGGAGGACAGTACTAATGAATTATACGAAATGGAGATATTATCCAGAGGAAATGATGAACTTTTACAATTAAACTGCTTAGGAAATGATTGTAAGGATGAAGATTTTGATGAATGGGACATGGAGGAATCTctgattaataaagaaaattgtCCTGATGAAAGGGATGATGGTACTGAAAATAAGtctaaaatatatcttaaagaTGAACCAATGGATCTTGATGTAAGGTCAATTTCTGCAACACCAGAAGAAGAGATGAAGAGGAATACACCTCCACTGCTTCCAGTACCATCAAGCTCTACAACCTCTTATGGTACTAAAAGAAAACGAGATCTTGAATCATCTGACTGGAGTATAGAGACACCACTGACAACAGATATGATCATGGAAAAAGCAAGACAAATTCTGCAAAGAATCAATAAGTCAGATCAAATCGATAAAGACAGACGGAAGAAGGCAATCATAGGGATTTTTGGAAAATCGGGACAAGGAAAAAGCTCTCTTTTAAGTGCAATCTTGGGGAAAAAGGATCTCTTACCGTCTGGTTGTTTTGGTGCCTGTACAGCTGTTGTTACTCAGGTGGAAGCCAATATGACcgactccaactacacagcagaGATCGAATTCATCTCTAAAACGGAGTGGGAAGAAGAGCTCAAAGATATGGTTGGAGATctaaaagatgaaaatgagGACAGGAATGAGGACTTTAGTGAAACGGCTGTAGAAAAGATAACTGCATTGTATGGAGCTGATGCAGACCAGAAAACATTAGAAGAGCTTCAGGTTGATGAAAAATTTGCTGAGATTAAAAGCTTTTTGTCTCTCCGTAAGAAAATAATCTCAAACAGCGATGTCTCTAAATTCGCCAGCGATGTTGGAAGTTTCATACAACACAGTGCGTCAAATCCTGGCGGCTGGTTCTGGCCGCTGGTGAAGAGCGTGACCATCAAGATACCAGACTGTCATGAACTCCTGGAGCACATTGTGCTTGTTGATCTTCCTGGGACTGGAGACTgcaacaagataagaaatgaccTGTGgaaatctAAACTGGCAGAGTGCTCTTTTGTGTGGATTGTAAATAATATCCAGCGAGCGATCACTGATAGAGAACCCTGGGGTATGTTGAAGCACTGCATTGAAGAACTGGGACCAGGAGGAAAATGCAAAGGCATTAACTTCATCTGCACAAAGACTGATGACATGAATCAACAAGAGTATATGAGATCTATACGGCTTCCAAAAGACCAAATCCCAAAAGACAAGGATCAGAAACGGCCATGCATACTTCATAGAAATGAACTTGACAAAACAAGGGTCAAAGAAAAGTTTGACAATTCTGAAATCAAGaaaatattcaaCACTGAAAATCAGTTTCAAGTTTTTACTGTGAGTTCCAAAGCATTCTTTGACCATAATTTAAATCTGGAATCAAGTGAAACAGaAATCCCAAAGCTGCAGGATGATCTGAGGAATCTTAACAAGAGCATTAACAGAGAACTGGCCAGAGATTATGTCAATAAAGCAAAGGGAGCAGTGCTCTTAGTCCAAAGTGGCCTGATGAAAATAGACAAGAAAATGATTGAAATTAAAGTCAGCGAATTTAAGAACAACCTAAAGGAGTCACTAGATGAATTGGATGAATATTTTGACAGCATTTATAATGATCTGGAGCGGCATCTCTCCGAGGGAGTTAAAGAATCAATAAAATCATGTGTTGCTTCCACAACAGAATTAATAACACCCaataAAACTAGAAGAGGGTTCCATAAAGTCCTTGGAGCTTTGTGCAAGAACTACGGATATTACTGGTCAAAAAATCGGGAGGAATTTCGAGACCTGAACAAGACATTGGccaaaaaaatccataaatgtatttatagcgATTTCTGTCAGATTTTCCCTGTGGCTGGGAAAACAGGGAAATCAGTGCAGGAACAGATTGATCAGTTCAGTATCATCCAGAATGATTCTGCTTACCTCAGGTCTGACGTACTTCATTACATTCAGAACTTCATCCAAACCGAGGAAATCAAACTGAAGGCAGCACTCAACATATACATTGTTGACTCGAAGAAGCAAATCCACTCATCAGTACAACTAACAATTATGGAAGAAATGGCTACTTGCTATAAGCgagcTGCAGCTGTGAAAGGAACGGGATCCTTAAAGAGAATGCAAGACCTCTTAATAACCACAGTTgatgagaaaaaacaaatcatgttCAACAAAGCAAAAATGGAAATGCTAAAAAGTCTGACTGACTTAAAGCTGATGGTGAAGGGGGCTCTTGAAAAACACTTACAGGAAGCAATAGAACGCTCACAATCCCAAACCAGCAAAAAGTCAAAGATGGATTTCTCCAGAGAGGTTGAGGAGCTTGAGACACTTCTACAGCAACTGTCTGACAAGAAGGATAGGAGATCCACGGGTTACAGGAGTTCAAGACAAgaaCCTTCAAGACATCCTGCAATGGCTCAACAAGGTGCTAAAAGAAAGCGGCATTCTGAATCATGTGACTCAGACACACCACTGACAATAGATGTAAGGATCACAATGAAGGCAAAGGAAATCATGAAAAGAGTCAGAGATAACTCGACCGACACAATCTGCATGCACAAAGACATCATTTCAAAGATAAGTAAAATGAATAGTGTtaacagaaagaagaaaaccaTAGGGATTTTTGGGAAATCAGGAGAAGGAAAGAGCTTCCTATTAAGTGCAATTTTAGGAAAAGAGAATCTACTGCCGTCTGGTTGTTTTGGTGCCTGTACAGCTGTTATTACTCAGGTGGAAGCCAATATGACcgactccaactacacagcagaGATTGAACTAATCTCTAAAGAGGAGTGGGAGAAAGAGCTCAGTCATCTTCATacaattttatcaaataaaaatgaggaTGAGGAATTGGTTATAATTGCAAAAGAAAAGATCACTGCGCTGTATGGAGAAGATGCCTTCAAGAAAACATTAGAGGAGCTCAAGAATGACGACAAATATGCTGAaattaaaactcaaaaaatcTCAAAACGTGATGTCTCTGAATTTGCAGATGAGGTTGCACGTTTCATACAAAACAGTGCAGTACAAACTGGCGGCTGGTTCTGGCCGCTGGTGAAGAGCGTGACCATCAAGATACCAGACCGTCGTGAACTCCTGGAGCACATTGTGCTCGTTGATATTCCTGGGACTGGAGACTGCAACAAGACTAGAGATGACCTGTGGAAATCTAAACTGAGAGAGTGCTCTTCAGTGTGGATTGTAAGTAATATTAATCGAGCAATCACTGACAGAAACCCCTTGGGGTTACTAAAGCACTGCATTGAAGAACTGGGACCAGGAGGAGAatgtaaaaacatcaaatttatCTGTACAAAAACTGATGACATAGATCCAACTGACTTTAAAAGAGATCCACGGGTTACAGGACTTCAAGACAAGAAACAGATAAAAATGTGCATCCATCTAAGAAACGAATGTGCCAAGAAAAGTGTGaaagaaaaatttgaaaattcTGAAATCAAGaaaaGTTTCAGCACTGACAATGATTTTCTTCAAGTATTTACTGTAAGTTCTAAAGCATTCTTCGACGCCAGTTTAAATCTGGAATCTGCTGAAACAGAAATCCCAAAGCTGCAGGATGATCTGAGGAGTCTTAACAAGAGCATTAACAGAGAACTGGCCAGAGATTATGTCAACGAAGCAAAGGGAGTTTTGTCTCTGATCCAAAGTGTCCAGCTGGATAAAGACAAGAAAGCGGCTGAAATGAAAGACAGCATCATCAAGGAACTTCGAAATAATCTAGAACAGGAACTGAGTAATCTTGACAGGTATTTTGTCTGCGTTTATAAAGTTTTGGATCAGCGTCTATCACAGGGAGTGAAAGAATCAGAGACGCTATGTGTTGAATCCACAAAGACATTAATAACACCGATAGCCTATAACAGCCTTGAAGCTTTGTGCAGAAAGGGTGGATGCCACTGTCCAAAAAACAAGGATATAATTCTAGACCTGAACAAAACATTGGCCAAACCCCTGCATCAGTTCATTGATGATGATTTCCGTCAGATTTTTTCTGTGTCTGGAATAACAGAGAAGTCAGTGTATGAGCAGCTTGGTGCATTCACTATTATCCATAGTCACACGGCTTACCCCAGATCTCCCATATGGCCTTACATTCATTACTTCATCAAATCGGAGGAAACCAAACTAATCGCTGAGCTCAAAAGAGAAATTGTTGACAAGAAGAAGGAAGTCTTCTCATCAATCCAAAAAACCATTGAGAACGAAATGTCTTTTTGCTACAAACAAGCTGCAGCTATGAAAGGACCAGGAAGCTTGAAGAGAATGAAAGCTCTGTTACTAAACACGGTCGACGACATGAAAAAAGACATGTTTGACAAAGCAAAAACGGAAATGCTTAAAAAGTGTGATGAATTAAAGCTCCACATAAAGGCTCGTCTTGACATAGGACTAAAGAGAGCAATGGATCTCTCACTGTCACAAAGCAGCACAAGCAAGTCGATGGATGTCTCCAGAGAAATCGAAGAGCTGGATGGACTTCTAGAGCAACTGTCCGACTGAAGCCCATTTCCATCAGATTCTATGATTTTACAACAAATCATTCGATTCTTTcaaatctttacttttttttaattcaaagttaCTACTATGCTGTTATGTTTCTGATTATACGTTTGTTTGCTAATAGaagtgttcatttgtttgtttgttttatcaaaataaaaaggctTACCCAAAGTGTATATTGATTAATTGTTGGTTTTTatctttaacttttaaaaaaatatagcaaGAACAATTAATTTGAAATTCATTAATTGGCAATTCATTAGACTGGAAAGTAATTGCAAAAATTCTTTTGAAATACATgaaataagaagaaaataagaaatactattttttattaataatgacagcaaattaaatgtttagctTCCTtcacataaagtgcaaaaaaagatatattgtactgtactgtatgaaaaatgtgttttttatactgtaagtTGGGTGGGTGAAAAGAAATATCACCCATCTATGGCATCCTCAAATGGTTAttgaataaacttttttaatcaTCA

Function

GO:

id name namespace
GO:0042611 MHC protein complex cellular_component
GO:0042613 MHC class II protein complex cellular_component

KEGG:

id description
ko04612 Antigen processing and presentation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198291 lncRNA downstream 3867 18184118 ~ 18187126 (-) False si:dkey-266f7.5
TU198382 lncRNA downstream 172731 18017969 ~ 18018262 (-) True G134319
TU198380 lncRNA downstream 224454 17965575 ~ 17966539 (-) True G134317
TU198370 lncRNA downstream 243159 17938947 ~ 17947834 (-) True G134309
TU198341 lncRNA downstream 319037 17869131 ~ 17871956 (-) True G134298
TU198394 lncRNA upstream 5194 18225609 ~ 18227143 (-) False cks1b
TU198393 lncRNA upstream 5393 18225808 ~ 18227143 (-) False cks1b
TU198421 lncRNA upstream 47890 18268305 ~ 18269060 (-) True G134334
TU198417 lncRNA upstream 47993 18268408 ~ 18268986 (-) False G134334
TU198419 lncRNA upstream 47993 18268408 ~ 18268891 (-) False G134334
XM_043217699.1 mRNA downstream 2964 18169523 ~ 18188029 (-) False si:dkey-266f7.5
XM_043217700.1 mRNA downstream 3895 18169523 ~ 18187098 (-) False si:dkey-266f7.5
XM_043217703.1 mRNA downstream 7761 18176698 ~ 18183232 (-) False si:dkey-266f7.5
XM_043217702.1 mRNA downstream 7801 18176698 ~ 18183192 (-) False si:dkey-266f7.5
XM_043217706.1 mRNA downstream 7920 18171647 ~ 18183073 (-) False si:dkey-266f7.5
XM_043217540.1 mRNA upstream 5378 18225793 ~ 18240853 (-) False cks1b
XM_043217538.1 mRNA upstream 5378 18225793 ~ 18240853 (-) True cks1b
XM_043217541.1 mRNA upstream 5378 18225793 ~ 18231229 (-) False cks1b
XM_043217544.1 mRNA upstream 5378 18225793 ~ 18227163 (-) False cks1b
XM_043217542.1 mRNA upstream 5378 18225793 ~ 18227155 (-) False cks1b
XR_006247044.1 other downstream 2972 18184141 ~ 18188021 (-) False si:dkey-266f7.5
XR_006247043.1 other downstream 2973 18184141 ~ 18188020 (-) False si:dkey-266f7.5
XR_006247042.1 other downstream 2975 18184141 ~ 18188018 (-) False si:dkey-266f7.5
TU198381 other downstream 179594 18010882 ~ 18011399 (-) True G134318
TU198368 other downstream 255557 17929689 ~ 17935436 (-) True s100a10a
TU198770 other upstream 656199 18876614 ~ 18933139 (-) False smim13
TU198769 other upstream 707106 18927521 ~ 18933139 (-) False smim13
XR_006246998.1 other upstream 1322367 19542782 ~ 19652807 (-) False khdrbs3
XR_006246997.1 other upstream 1322367 19542782 ~ 19652806 (-) False khdrbs3
XR_006247087.1 other upstream 1450372 19670787 ~ 19688386 (-) False LOC122324012

Expression Profile