RNA id: XM_043217082.1


Basic Information

Item Value
RNA id XM_043217082.1
length 6277
RNA type mRNA
GC content 0.45
exon number 19
gene id topaz1
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 15389000 ~ 15398843 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttcggTAATAATCGCTCAGTGGCAAGGACAGGTATTGAGGAGCTCATGTTTCATTAAtactgtctttaaaaaaaagagagagagagagagagcgagagcggtTTATTGTATGTGCTATACAGTATTATCGCGTTCTACCAGCTTTATCTGGGTTGATTTACGTGACTTTGGATTAATGCGGCGCTGCCTACGAGTCAAATGCGTTTGATCTTTTAATTAAGTCCTTCTTAAATCAACAATTTACGCTCCGTATAAACTGtaacatgtttattttgcagCGCACTGGGGAGAAGCGAGTTGTTTTTTTCGGGGTACGAGTTTAGTTAGCGCACGGATGCGCGTTTTCGTTAACGTTAGTCGCTGTTGGCTTCAGTAATGCTTCCGTGCGGCGGCGTTTCGAGGATCAAATTGAAGAGGGATTCGTTTAAGCTCGGTAGCAAATTAGAGCCGAGTAAACGCAGATGGACTGGGCCTAAAAGCGTACAGGTTCAAGACCAAGCCAGTTGTCCGGCTCCGGAGGCAGCAGAACCGAGCGCCAACAAAACCGACCGTGAACTTCTGTCCCAATTTGACTGGGAAGCGAGCTCCACACAAGAGGGCCGCGATCGGCGTAACTGCGGCGAAGGGGGTTTTAATCAAGGTACTTTCCCACCCACAGTCAGTGGCGTTAGTAACTGTCAGGGGGTAGGAACGAAAGCTAAAAGTACCTGCACTGAGAGTCAGCCGTTGTCCGAACATAGAAAGGAGTTCTTCTACCGTTTGCGCTTAGCTTTGTGCTTGAAACGTCGAAATGGCGGGAATCGTGCGATGCGGGGGTCAACAGAAGCTCAGTGCCGCGCGCTGTCGTATATAAACAGTAACGCGTCGGTCGAGTCAGATCACGTTTCCGTTAAATCCACTGTCTGTGAGGAATCGGTGGAACAAACCCCGCCTGCCCAGATAGATCCGCATTACGATAAAAACACCGAGGGCCCAGATTATTCGGGGCACGAAAAGCCTCGTGCCAGGAGGGGGAGACCAAGGAAACCGTTTATTGATAATTGTGGTGGCCCTAATGGACAGGTGAAAGCTACCATCAAGACGGACGCTCGGCGAGGCCGTGCAAGTAGTGCCAGGCGTGCTATTTCTGCACAAACACCAAATATTAGTTCAAAACATGAGCTGAGACGACAGCTTAGGTCAGACACAAGGAAAGCCTGCAAACGACTGGTGAAAAATTCGTGCTGTGCTTTGTGCGGTGATGTAAAATACACTCCTCCCCCTAGTAAGAATCCGGCCCCTTTACTCAGTCACAGATCTAGAGCTGTCCACTCCAGCCAGACTGTGTGCCAGAAAGATGATGGTCAAATCGCAGAATCCCCGACCGCGATGAGTTTCCGCTTCGAGAAATACCCCATGGTGAATCTGTGCGATGTAGCCAGAGTGTTTGACATAGCCTCTCGTGATTTCTCATATGTCTTACCGGCCGTACTAAGACAAAAGAGGAGGCGCAAAAGAGTGCACTGCTTAAGGAAACAATTAAATTTTGTTGTGCATCCTCATCTCCACGGCATCAAGGAGTATAGAAGTAAGATTGCCAACCAGTCCTGGGAAGTTTCCACACCAACCCATAGCTGTGCTTCTTTTTCATCAGGTGATCTACCATCTGGAGCTTCGGGCACATACATTTCACACACAGCTGAGACTCCTGGTGGATCTGCTAAGGAATGGGATGCTTGTCTCGCAAGGAATCCAGACTCCGAGAGTATGAGACAGGACGACTTCAAAGGAACTGACGCAGTGCTCCCAGGGTCTGATGACAGTGGCCCTGTTTTGCATTTCTGTGAGAAAGACAAGGCCTGTCCAGTGACAAACATCTCTGAAAGTCCTACCAGCTCGACACGACGTGTACCACCTCTAATACTCAGACGGGTTGCTGTCAGTGGTTTTGGTTTGAGAGATGGTGGCGGTAATGATGATGAGGGTAAGAACAGTGGTCATTCCCTGGatgaagagaaagaggaggacaGTAGTAATGAGGATTCTGACAGTGAAGTGAACTCGCCTGAGAGTTTCTCCTGCCAGCGAGTGCAAGCCTACATATTTTTCCCTCAATCATCATGTGCTCGCACATACAAGACCTGGCCTTTCCCTAGAACAGGCCCTCCTAATGAACTCAGGTCGCCCCTGCACACTGGACCCCGATGGATTGTGGCCACTTCATTTCCTGCCATCGTTCAAACATCTCTCAGTGGAACACCTGAATGCTTATCAGATAAAGATGTTGAAAACAAACTGTCCAAACccacaaagcaaagcaaaagcaACTCTAAAACGAGAGAATTGTTGCCAGGTGAGCCCACGTTAGAGGTGATGGAAAGAACTCAGAAAAGTCAAGCACAATGTCTTACTCCAAGTCGTACAGTGACACATGATAGTTTTATTTCGAGACTTGCAGAACACAACAGTTGTAGTTTAGAAAGCAGAGACCTACTGGAGCAGCAGCCTTCTGCATCAGGCAAAATGCTGCCCACTTGCACAGTTGAAAAGACTCCAAAAGATCAAGTGGAAACTCTTAAACCAAGAGGTACATTGAAGCAAGATAGTTGTATTTTAAGACTCTCAGACCAAAACAGTTGCAGTTTAGAAACTAGAGACCTACTGAGCAAGCAGCCTTCTGCATCTGGTGAAACACCACCCACTTGCAGACCTGAAGGGACTTCAAGGGGTCTAGTGCACAGTACAAAAGTCACTTTGACTCATGTTTCCATACCTGCAGAGCCAGAGTCAAACCAAAGTTTTAAGAAGGCTTCAGAGGATGTTCTTGAGTCCTCTGTACCTGTAGTGACTGTACAGGGTAACATCTGCAAGTTTAATGGTTTTGGCTATGCAACGTCATTAGAGGAGTGCAGCCTTTTGAAAAATCATTGCCTGCTCAAGAAGTTTGATCAGAAACCGTTCGAAATTCAGGCTGATTTCATGAGGGAAGAAGATCAAAAATTGTCGAAAGGTGTTTCGCATCTCGAGATCACTACTCTTCCTGTTAGCCAAACCTCAACAGCTAAGTCAGTTGAGGACCAAGAATGTAACGGAAATAGTGACGGACAAACTCTCTATAACCCTGGGTCGCTTTCGGAAGCATGTCTTAAAGTAAACATGCTAAAAGCACAGCATTCTTCTTTAGTGACGTCAACTTACACAATGGTTCAGGATGCCACACTGCATACAGCCGGCAGCAATCCTGACTGCTCAGGAGAAGAGAAGCAAAATCAAGAATTTGACACCTGTGCATTCAAAGACTCCTCTTCTGAAGATGAAAATGAACAACTCACTGGTCTGTCATTAGATGACCCTGTGGAACATGCTGCTCTGAGCTCTCAGTCTGATGATGATGGGACAAGTCAGATGAATGATGAAGACGACGACTCCACCCCTTCACAATTAACAGCGGTTGCTGACAGCTTTCTGGATGTTTCTCGAGCATATGAAGAAGACGTCCTTGTGCTAGATGTGATACAAGATGATCCAGAGTTGTTTGGGGCTGTCACTGAAACTGTGAGTAAACAGGGCACGTCAGCAGAGGAGAGTGGAAAGGCACTGCCACAGACAGAGAAACTTCAAACGGTGAACCATTGCAAGATTGTCTGGGACCTAAATTCAGATGgcTCCACTGAGTCTAACCCAACTGCTGCAGAAGTCAAGACAGACAGTCTGAAAGATGGTGGTTCTCTAACAGTTAAGGAGACTTACAGAGAGCAGCCTGTCCGGGAAATGAGTATTTCAAAATCAGAGAATTCCACAGACTGCAATAACAATAAAGAGATGAAACAACCAAATGGTATTGCAGGAATAAACACAAGAGCATCAAGACTTGTGATGGACACATGCAGCAACGGGTATGAAGTGACTCCAAAAGAGAGAACTTCAAGCAGTAATTATTGTTGGTTCTACTTTAGTGAATATAACTCCTGCATTCGAAGCGTCTGTTGGTTCCCGCATGTACCGAGAGATGGAGATGAAAAGttctgCATGAATACAGTAAAGAAGTTCTGTCATACTGGGAAACAGTCTCTTATTCTGCGTGCAGTGGAGGTGTTTGTGGGATATTACAGCAGTTGTTCTCCCAGCGTCAGTTTCAGCCAGGAGATTGTCAACTCTCTGTTGTCGTCTCTGCTCAATTTTTGTTTGCTGGGTGAATTTCAAGCAGTCGTTAACTTGCTTCTCAAACACACGAGGCTGCCTCCACCTGAgattattttagacatttttaaacttgTGATGGAAAGGGGACTGATTAATTTTGTACCTGAGCTCATTCATCTCACCTCAAAGtTGATCGAGGCAGGATGTGTATTCAGTGTGGATCAGTGTGAGGTCATGCAGAATCATCTCCACATGATGCAGGTTCCTCGACAGCAGATGGACATTTTCCTTGCTGTTAAATGCAGAGCTCTGGTAACTAATCCCCATACCTCTGAGCTGTCAGATCTGGCCCAGTCTGTTGTTAGAGTTGAGATGCTGAAGCATCAGGAAGACTGGGCTGGACTGGCTCTTTTATTCTGCAATGTCTGTGTGGGGTCACAAAGTCAAATGGAACTTAACAGGTTTTGCTGCTGTGTTACCATGGCACTGCTGAAGGAGCCCAAAGGCAAACTCACCTTACCGTATGAGCTGTTTGCTGAATCAGTCTGTCAGCAAGTCTTGTCCAATGACATGATAAAAACCATCCTGGGAAGAATTGGAGTCTCTCTGATCTTCAGGTACCACAGGACACGGGACTGGAACAAGGGAGTGAAGCTGGTCAGTGTGATGTTCAGACTGCACATCGAGTTCGTCACTCTGAAAGGGCTTATGGGGAATGAGCACAGGGTGTCTCGCTGTCAGCTGGTCACTATGGCAACGGAGTTCTTCCTCCATAGCGGGAGTATTGAGGGAGCTCTGAAAATGCTGAGAGCTGATGGCTGGTTTGTGAGCTCCAGCATGTGGCCTTGTGAGCAGGCTGACGTGAAAAACAGAAAGCATGTCCTGACACTCTTAGCTGGGAAAACATCACACAGAGACGCCTATGAAATTCTTACCAACTTACCTGGAATCAGACAACCGATAGATGGTGTGCAGAAAAACGACTACGCTGAAACATTCAATGCTCATCTGCGTCTGTGCTTGGTAAAGCAGACATTACCGGTCGCCGCAGATATTCTTGAGTTCATGCTAATGCATGGTATGGTGCCTGAAACCCTCCCGTTACAGAGTCTCATCCATAAACTAGGCAAACAGAACAACTGGAGCCGTGTGAGGGCCCTTTTTAAACgtgctCAGTCAGCAGGGTTTTACTCTGCAGTGGTGTGTGAAAGGGACTCTTTGTTTCTGCCATGTAATCTCAGTGAAATTGAGATGACGTTGGCCTTCGAGATGTTCATCACCTTGATTAATACTAAACTACTGGCCCCTGCTGAAGCCTTCCAACCATTTCTAATTACACTCAGACGGCATGCCGATATTGAGGATGTGACAGAGAGTGTGTACCTGGCAGCCGGTTGTCGGCTTCTCTCTGCCGCTCTCATACCAAACCCCAAATTGAGCATCCGCTACTCAGCTGTCAATAAAAGCCAAGAACAACTGTTTCACCTCGACCCTGCATCTGCCCACAAATGGTTTTTGCAAAACGAGCGGTGGGCACGAGAGATTTGGGCAAGCtagcatacacaaacacacacagacattctTGTGAACAGTCCGAAAAAGTAACAAATGTCTAAGTCTGATCAAAGGTTAGTTTATGTTACAGACTGTTGAAACTGAGACTTGTCGAAACTGGTTGCACAATGTTTTGTggtgtttgttaaaatgttattgaagGACAAGACTGCTTAGTTTTGAGTTgtaaaaagaaaggttttgtaatatttagttttatgttcTTAATTTCGACTTCCATAGATTTATGTCGGAGTCTGCAAATATAAGTCGTTCATGTGGGTAAAAACATTATCTAACAACAAAAAGAACCCCCCccatattttgtgtgtgtgcgtgtatgtgtgtttacaatAGTTTTGAGTACTGATAAAGATTTGACAACAGAGTTACTTTCATTGTTAGCATTTGTTTTACCAATCGGTTGTCAAATTTATTTGGTgattaaactgcaaaaatgatGGTACACATGGTTGCACTGAAAGGCACTTATGTACATTCATATAAAAGACATTTCATCATTGGATACAATTTTGTCTAGTTCTGCAATGTGCACGTTTCAGTTTGTTCAGTTTAActgaaaatcacaaataaatttaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196629 lncRNA upstream 10981 15374500 ~ 15378019 (+) True G133129
TU196618 lncRNA upstream 76168 15309668 ~ 15312832 (+) False LOC122323314
TU196596 lncRNA upstream 107996 15196057 ~ 15281004 (+) True G133109
XR_006247096.1 lncRNA upstream 353578 15022275 ~ 15035422 (+) True LOC122324050
TU196536 lncRNA upstream 631024 14757624 ~ 14757976 (+) True G133068
TU196781 lncRNA downstream 61495 15460338 ~ 15460706 (+) True G133253
TU196784 lncRNA downstream 83155 15481998 ~ 15483517 (+) True G133256
TU196793 lncRNA downstream 150001 15548844 ~ 15549137 (+) True G133265
TU196807 lncRNA downstream 184362 15583205 ~ 15606585 (+) True G133276
TU196821 lncRNA downstream 226497 15625340 ~ 15626146 (+) False aste1b
XM_043218317.1 mRNA upstream 4595 15380637 ~ 15384405 (+) True LOC122324102
XM_043218316.1 mRNA upstream 12518 15371304 ~ 15376482 (+) False sgo1
XM_043218315.1 mRNA upstream 12518 15371305 ~ 15376482 (+) True sgo1
XM_043218332.1 mRNA upstream 28566 15355608 ~ 15360434 (+) False anxa14
XM_043218331.1 mRNA upstream 28566 15355615 ~ 15360434 (+) False anxa14
XM_043218151.1 mRNA downstream 1722 15400565 ~ 15404546 (+) True si:ch1073-376c22.1
XM_043218152.1 mRNA downstream 1727 15400570 ~ 15404546 (+) False si:ch1073-376c22.1
XM_043217195.1 mRNA downstream 22298 15421141 ~ 15424497 (+) False cckb
XM_043217790.1 mRNA downstream 70741 15469584 ~ 15481200 (+) True LOC122323726
XM_043217789.1 mRNA downstream 70741 15469584 ~ 15481200 (+) False LOC122323726
unassigned_transcript_2195 other upstream 9459 15379470 ~ 15379541 (+) True trnap-agg_21
TU196623 other upstream 27155 15356740 ~ 15361845 (+) True anxa14
TU196534 other upstream 176570 14787544 ~ 15212430 (+) True G133066
TU196767 other downstream 22292 15421135 ~ 15424492 (+) True cckb
TU196794 other downstream 170821 15569664 ~ 15577981 (+) True G133266
TU196987 other downstream 376414 15775257 ~ 15776674 (+) False hoxa5a
TU197370 other downstream 1287282 16686125 ~ 16692945 (+) True G133626
unassigned_transcript_2198 other downstream 1485236 16884079 ~ 16885971 (+) True LOC122323322

Expression Profile