RNA id: XM_043217138.1


Basic Information

Item Value
RNA id XM_043217138.1
length 4877
RNA type mRNA
GC content 0.42
exon number 7
gene id LOC122323359
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 4809114 ~ 4820027 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTCGTTCGTGCGCTTCGTTCATTTCTATAAACACTGGCGAGAAGTTGAGGCTGCGCGGCACGAGCGCGATGATGCTTGAATCCATCGAAGTTACAGAACGGCTCCATTGGCCGGAGATGGAAATGTCTAAGAGTTGTGTCCTAAGCCCCACGGAGAAGCCCGTGAGCCCCAGTCAGCTGCATCTGGAGCGCATGTCCTCTGGCGTTCTGAAGGACCTGTTTAACACGGCCACCAGCAGCTACAACACACTGCTGCAGAAAGAGTCAGACGATCAGGACCCCAAACGCTCCTCCTACAAGTTCCCTACACGAGTCTCCACGGCAAGGCATCGCGGCAGACCCCTGCCGACCCTTGCACCTCTAACGATGAGCGGCCTGGCTTTCGGTTGCAGAGACAGCAGGCACGCTCAGTCGGTGTTCTCGTGTTTCTCCAGCAGCAGCTCCAAACAAACTAACAGCATCACCATGCTGGGCAGTGCCATCCGGCTGTCCCCCTGCCCGATCCCCAGGCCCAAAAACAGCTGCACGGCCGGCACCAAACTCCCGCAGCTGTCCAGAGTGCTTCCTGCTGCTCGCGACGTAGAGAACTCAATCAAGAAGCTCTGCATCCTCGCTGCCATAAAGCCGTGTAATGTAGAGAAAGAGAAGGCCAGGTTTTTCAAAGCAGACTTTAAATACAATCCTCAGTTTGAATACAGCAACCCTCTACCTCCACAAGTACTAGCCAAGCACAGCGTCGCTTCAGACCGCTTCCTCACACAGGCTGTGCGGATCATGGAGTTGGCCTTGCAGAAATACGGCTCCTATGAGAGGTTTGAACAGGCTACTGGAGGAAACCTCCTCACCAAGAGCCGCATCTGGTACCATGTCAAAAAATACATGGAGAAGGAAGGATGCATGGGAGAGATTGTGGTTAATCTCACTGATGACCTCCTGTCCAGAGCGTCTATGACTGTGGTGAACGGCAGACCCACCCTCACCATCAACATCTCCACTGCCAGAGAGCAATGGCTGGAGGGCATGCTGAGGCATGAAGTCGGTACGCACTACTTCCGCGGCATCAACAACAGTCAGCAGCCGTGGGGCAGCAGCGGAGGCAGGAAGAAACACGGCCTGCGGCCCATCAACCCCACCGAGGAGGGCCTGGCCAGCATCCACAGCGTGCTCTTCCGCAAGGACCCCACTCTGTGGCGCGCCGCCCTGCTCTACTACACCGTCTACCAGGCCAGCCGCATGTCCTTCTCACAGCTCTTTCACAACCTGGGCCGCTTCCTGCATGACCCCAACACGCGATGGGACTACTGCGTCAGAGCCAAACGGGGACAGACCGACACGGCGCTGCCAGGTTGTTTCAGTAAGGACCAGGTTTATCTAGATGGCATCCTGAAGATCCTCAGACACAGAGACAAGATTGACTTCCAGCTGCTCATGGCTCTGGGAAAGgTGTCGTACGAGGACGTGGAGCGCCTGAAGAGTCTGGCTCTGATGGAGCACGTGCGGATTCCTCACTTCCTCCAGGACCAGGCGCGTTACGTCGAGCAGCTCCATAAAATCATGGAGGTCAACCAGCTAACCGACGAGGAGCTGTGCCTGCTTATCTGAGcacgtgacctctgacctccagcACCTGCCCAGGTCGTGCACTACCACTCGTAAACATGCGTTCACGTCGCACTTCACTAAAACACTGAAGACGTAAAGACGAAATTGCGTTTTGCATTCAAAATTAAGCCTATTTTTAAaggcattaaatgttttttaattattgttctGACCTTACGCCTCATTTAGCGTGAGATCTCAATTTGATTACTGTAATGTgctaaattaattgcattagtCGTTAATAATTACCAATCTTATGAAACATGAAAtcaaatggatgaatggatgaacatAATAGTTTAAAAGCAGGCAGACTTCAGCTCTAAACGCTTTCTTATTTTCTAGAATAGAGACTGAAGTCTGTACAGGGGCCTGTGGagctctgtttgttttcctAATTTTTTAGTCTCTTCTGAAGGTTCTCAGGACATCTTCAATCTCTTCCTAGAGGATATCGAGGGGCCAAACTACAGATTGCCAAACCTTCATATGTACTAcaagttcctttttttcctgACTTTATATGACATTTTGATTTGTGTGTCTTATGAACTGCTTTCAGATAGTTTTCATATTCATGGCGGCATGCGTTTAACAATATAACTTGTGGATGATTGGAATTTTAAGCAGCTGATGATTACAAAAGGAGTCATTATCTGGGTGCCAAAATGTTAATCTTTGTCTAAAAAGCGTCTTTCGTGGAAGCAGACGGTCTTAAACGTCATATACAGCGTATGAATCATCTCTCACGACTGCTCTACCTTGATTGTATTGTTGATGTGTATGACCTTTGACCTTGCTCTGTTCCCGACAGatcaaaaagcactttaaagttGCCTATAAAATGATTTCATGGCCCATGACAACTTCTCAATGTGAtcttattactaaataaaaatttaataaatgcacgCCTTGCTTTCAGACGAACCCTACTGAGAAGCGCTCaacttttaatcttctacaaactaacagaaataacaatatagtttcaaacaggcaggcagaacaaaatcCACACGCATTCAAGACCAACTAAAGTCGGACCAACTGAATGCAAACAcgctggacttaaatacacacaggaaatgactaaattaactagacacaggtgaacaCGCTAagataattaacagaaagtaggtcacagagcacatggcacaagacaaaaacaacaacaaaggacTCCACGTGTTCATTATAAAGCATGCTAAGAATGTTCAATTGAAATcagttcaaatatttttcagataTAGGTACATTTTTGTTCATAGAAAACAGCTTTAGTTAATTCTCTCCAGGCTGATGGCTCTATCCAACCGTTTGgtggatttttgaaaaataaggaTGTATTTTTAGTCTTATAGGAAGAAGAGAATACCCGTCTTTTAGAGAAACACAGCGGAAAAGATCAGGCCCGACATAATAATCCTGACCAAATATTTCAGTCACATTCTAGATCATTTTTCCCACAATGTTACATCTTTCCAATGCAATGTGTTACTGGGTAGatagctattttttattttagatatataacATGTATTAGATGAAATTATAACATGTATTAAAAGAAATCAGATAAATCTAAAATGAGAACTACTATAGCTCTTGGGGTACTGATCGAGGGGGACGTAGAGTGCACTGAAGCGTAGAAATCTTTAATTACAGGTGATCCGATCCAGACTTTAAAGAATGCTCATTGTTTACAGGTGAGCAATGATCAATCCATTCCCACAATGCCCTCTCAAACACACGGTAAGTGATCTGGAAAACTCTTTCCACGGCCCTCTGCTCTCGCATGTCTTTGTAACCAGATCACCTGCTGATTGACACCTACAAGGACACAGGGTTCgagtgtctcacacacacacacacacacacacgcgcgtcAGGGCTCATTAATCTCTCTGAGATCTTGGCTTTCACACTTCCTGCAATCTGTGGGATTAATCAGGGATTGCGGTGTCATGGACATTCATGGTTTATATTTATCTCATATTATACTCATAATCGcgtaataatgtataaaatcatCCTATCATAGTTGCATTAGTAATAACTAATGTTgtctaaaaatgcaaatgcaatcaaAGGCATTTGAGCAGAATGGAGGATGGGATTCAGGTATATTAGTTGATtatgaaatagaaatgaagCCTTTTGCACATTGTCAGTTAAAAATGATAGGATTTAAATACtactttaataaattacatttacttttctaatattattaatttacattttttgacagcTGCTCTCTTATTAATAGTCCATGTAGTTACATAATGCACATTTAGGCAGTAAAGGTTAGTGGCCACTAGAGGACACACTGGACAGCTTTTCTGTCCTGcctgagaaaaataatataaaacaaatccttgttttaaatgtctttataggtgtgtatttgtgtgcattCAATTTGACCTAACACGCACATTTAAATATGTCCAgcacactgtaaataaaaccagGGCTTTGATACgtgcacaaaaatgtttttttgaaaagctAATAGATGATGTTTGGAAAGGTCTGTAACCCAAAGCAGAAGTGCTGTGTCTGATCAGAGAAGTGCGTTTTACTCGCTAGTATTTTTCACCAGATCTCAGTGTAAAGTTCACTGATCATGTGTCAGATCCTAACGCTGAACAAACAGGTGGATGTTTGCTTGATAAATAGCGGAAGTAGGACAGAGCACTTGATGAAACTGACCAAAACTGAAATAACagtgtataaaaaatatgatttttttttttaattgcatgcaataaaagtatttaaactaaaaataaaaataaaccagaaaatacaaaaataaaaactatttcaaaatatcaAGATAATCTGTATCTCCGTAATACtaatataacacttttttcTAAAAGTACACTTTTGCGCAATTTCCTACCAAAAATCTTGTCACGTtatcaaaaaaatcttttctaaTGTGATCAGTTTGAGCGAATGCAGCACTTGATGACGAccagtaattaataatattacaataataatattaaatatcacaaatcCACAATAAGATGCAAACGCATTGACCTTGATGCTTGTAATCAGTGTTAGTCAAGAGCATGTGAAAATTAGCCActaagagagaaagaaaagagagctcACACTCTGCGGGACAATAAAagatgtatgtttttaaagtcaATCTCTTCCGTCTGTAAGGACACAATGTTAGTTTTATAAGgatctatttttattagtgctgtcaaaagtttaatcaaatccaaaataagtttttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192926 lncRNA downstream 64559 4738805 ~ 4744555 (-) True G130690
TU192692 lncRNA downstream 267523 4540269 ~ 4541591 (-) False polr2k
TU192630 lncRNA downstream 317627 4490260 ~ 4491487 (-) True G130476
TU192638 lncRNA downstream 324718 4469759 ~ 4484396 (-) True G130482
TU192654 lncRNA downstream 400720 4408194 ~ 4408394 (-) True G130494
TU192985 lncRNA upstream 10133 4830024 ~ 4964829 (-) True G130713
TU192992 lncRNA upstream 29258 4849149 ~ 4986966 (-) True G130716
TU192993 lncRNA upstream 30701 4850592 ~ 4989763 (-) False G130717
TU192996 lncRNA upstream 30701 4850592 ~ 4989763 (-) True G130717
TU192966 lncRNA upstream 53843 4873734 ~ 5013690 (-) True G130710
XM_043217841.1 mRNA downstream 73454 4707322 ~ 4735660 (-) True LOC122323748
XM_043217842.1 mRNA downstream 73455 4707322 ~ 4735659 (-) False LOC122323748
XM_043217588.1 mRNA downstream 228193 4573448 ~ 4580921 (-) True adck5
XM_043217762.1 mRNA downstream 267485 4539979 ~ 4541629 (-) True polr2k
XM_043218357.1 mRNA downstream 271131 4529524 ~ 4537983 (-) True spag1a
XM_043217749.1 mRNA upstream 1846 4821737 ~ 4827915 (-) True LOC122323699
XM_043217748.1 mRNA upstream 1846 4821737 ~ 4827914 (-) False LOC122323699
XM_043217362.1 mRNA upstream 232435 5052326 ~ 5060357 (-) False LOC122323496
XM_043217361.1 mRNA upstream 236169 5056060 ~ 5060357 (-) True LOC122323496
XM_043217363.1 mRNA upstream 243274 5063165 ~ 5065170 (-) True LOC122323497
TU192049 other downstream 1659325 3149154 ~ 3149789 (-) True G130083
TU191990 other downstream 1897511 2908489 ~ 2911603 (-) True G130041
TU191925 other downstream 1976158 2825344 ~ 2832956 (-) True G130000
TU191907 other downstream 2057544 2740004 ~ 2751570 (-) True LOC122323398
XR_006247129.1 other downstream 2489741 2319236 ~ 2319373 (-) True LOC122324259
TU193036 other upstream 267353 5087244 ~ 5104353 (-) False LOC122323502
TU193037 other upstream 267353 5087244 ~ 5222883 (-) True LOC122323502
TU193035 other upstream 280930 5100821 ~ 5104353 (-) False LOC122323502
TU193048 other upstream 321614 5141505 ~ 5158002 (-) True G130744
TU193049 other upstream 321614 5141505 ~ 5260164 (-) False G130744

Expression Profile