RNA id: XM_043217139.1


Basic Information

Item Value
RNA id XM_043217139.1
length 2495
RNA type mRNA
GC content 0.49
exon number 41
gene id si:ch211-80h18.1
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 18625596 ~ 18641283 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCACGTTTGCTGGTTGCTTTATGCCTGCTGCACAGTTTCCCACATAGACCTGTGCTAAAGATGCTGTCACGAAATCTTGTAATTGCTTCAGTGGCTGTTGTGTTTCTGGCGTCCACCGTATCTGCGGCTCCAGTTGAAGATAAGGAGCCTGAGGAAAATGACTTTGAGGCTGAAGAGGGTGAAGAAGAACTGTCAGAGGAGGAAGAGGATGATGATGACTCCAAAGGTCAGCATATGAAGGGAGCCGGATCGCAGCAGGCCACTGCAGCACCCAAAGGCTTGGGTATGACTCCTGGCAGCGCCGCCGCGGGCGAATCCCCAAACGGTCAGAAGCTTAATGGTGGCACTCAAACTGGCCAAGTCTCATCAGGCAGCACGTCGACAGCTTCAAATGGAGCAAACGGAAGCAACGGAAGAGACGGGTACTCTCGCCCATCTGGCTCTAGTTCTCATGATGCAAGTTATGGTGGACAAGATGGGTCCAAATCAGAGATAGTTCCTCCAGGTGTAGGAACTGGAGGAGAAGGTGCTAATGGAGGTTCAGGATCTAAAGTCCCTGGCACAGACGGGGGAGTCCATTCAGTGTCCATTACTGTTGTGTCATCAGGTCAAGGGTCATCAGGCCACATAGCAGCAGGTCATGGGTCTACAATGATATCCAGCCACGCTTTTGGCCGGCCTTCAGCAGGACAGATGTCAGACGGTGTGGCTGTAGTTTCCTCTGAGGTCCAATCACAGCCTGCAGGGTCAGAGGGATTGGCTCCACATACAGATGGCTCACAGTATGAAAATGGTGAAACGGCTCATGATGGATCTCAAATAGAGTCTCCAGAAATCCCTGAGATAGAATCTAACGGCAATGGTCACAAACAGCTTCTAAATGGAGGAGAAACAGGACTTACAGGCTTGGATCATTTCATGGCAGGCACATCTCAAATACAAGGAACAGgTGGTTTTGATTCATTTGGCACAAGCCCTCACCTGGAAATTACAGGCATAATAGATCAGTCAAGCCATGACTTTCTTGTTGGCTTAATGGGTGGAATAGGAGAGAGCTTTGGTCCAGACACCCAAACGGACGGGCTAGATCACATGGGACTCGCATTTCAGGTGGATTCGGCAGGCGCTGGCCTGAGTCCAGGGCACCCGTCCAGTGGCGGTCCGGTTCTAGACGCTCCTCCAGACTCTCCAGGACCAGATTACCTGTCTGTTGACAACGGGAATGGTGATTATGCTCATTCAATCAGCACGGCTGATAATGGAGCCCAGCCAAAGTCACCAGCTGATACAACAGATTCCTCATTAGTCTTTGACGCAATGTCACATCCGGGACATTCCTTCTTAGATTATTCAGATGGTGGGGCAGATAATAATGGTGCAGATTTACCTGATACAAACGGAAATGGAAACGGTCGGCACAAACCCGTAGTAGACATACAGAAAGGTGACCCTCCAGGCGTTCATCTCGACATCAGCGGAACAGGTCATCAGGGCGCCGCAACGGAGATGCATCACACAGCTGTTGGCGCTCTTGATCAAAGTGACCATACTCTCAGCCCTTACCTTGACACGACTGGATTTGACGGTGTCGCCGGTGCAAGCATGCAGACAGATATGGCAGGTGCAGCAGGAAATCCAGTGACTGACGGACAAATTCAAACAGACGTGACAGggCAGGGACACTTAGCTGTGACGGATGGCGTGCCGAATTACACAGCGTGTGTTTCTAAAAAGCAGATTCTGCGCGTGCGACCGGGACTGGATTCACAGATGCCTCAGAGACACATAGTAGCATGGTTCAGACAGACTTACCAGTCACAGGGGATCCATTCACAGGGGTTTCCTCACAGACAGATGCCATGGGCACAGctacAGCTGAACCTCAAGGGACTCTCGGGAGTCCAAGCCAACCTGGTGCTACGGAACAGACACAGCCAGCTGTATCAGCAGGTGAACAGTACCACACATCTGGTCAGGGTCCTGAAGGTGCAGAAAATGTGGAACTGGAAGATACCTGCTGATTTCCACATGAAGCCGAGAGTGAGGTTTCTGCGCTACAGATTTCAGTGCACAGACCAGAACGCCTGGCAGAGGAACCCTGAACCCGCCCGCTAGACTTTAGCtctcctttgtgtgtgtgtccggttgttttatttttgactatttAAACATTCAGAGGATACTGTAACTTAACTTTTTATTGCGCCTGTTTATAAAAAATGCCCTGtaagtattttattcattggtacgacggaagaaaaaaaaaacaatagcaggAGTCAAATGAAAGAGAAAGCGAAAAATCACCATTCAAAACGCATTTGCTGTGTAAATTTAACGGTCGTTTCCCCCATAAATGTCGCTAACGTTACTGTATTTTCTTGCCTAGATGTTGAAGCAATATTCTTTACCAATGTCACAGATTGTATATTGCTGAATGTATGTCATTTGATGATAATCTTTACATTAAATTGAACATCTATTTTGAACatca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198549 lncRNA downstream 39270 18572068 ~ 18586326 (-) True G134428
TU198546 lncRNA downstream 92096 18533173 ~ 18533500 (-) True G134426
XR_006247107.1 lncRNA downstream 93579 18523200 ~ 18532017 (-) False LOC122324145
TU198611 lncRNA upstream 47630 18688913 ~ 18689112 (-) False LOC122324083
TU198672 lncRNA upstream 190949 18832232 ~ 18832849 (-) True G134504
TU198837 lncRNA upstream 406238 19047521 ~ 19057963 (-) True G134592
TU198898 lncRNA upstream 621435 19262718 ~ 19264297 (-) True G134632
XR_006247047.1 lncRNA upstream 773616 19414899 ~ 19421472 (-) True LOC122323683
XM_043217829.1 mRNA downstream 14640 18542156 ~ 18610956 (-) True bop1
XM_043217765.1 mRNA downstream 110918 18511650 ~ 18514678 (-) True exosc7
XM_043217766.1 mRNA downstream 114091 18506695 ~ 18511505 (-) True clec3bb
XM_043217085.1 mRNA downstream 130038 18494100 ~ 18495558 (-) True limd1b
XM_043217029.1 mRNA downstream 131686 18482654 ~ 18493910 (-) True recql4
XM_043218495.1 mRNA upstream 5937 18647220 ~ 18658035 (-) False stm
XM_043218494.1 mRNA upstream 5937 18647220 ~ 18658035 (-) True stm
XM_043218213.1 mRNA upstream 26207 18667490 ~ 18670092 (-) True si:ch211-133n4.6
XM_043218282.1 mRNA upstream 46066 18687349 ~ 18691249 (-) True LOC122324083
XM_043217303.1 mRNA upstream 51466 18692749 ~ 18696279 (-) False LOC122323462
XR_006247044.1 other downstream 437575 18184141 ~ 18188021 (-) False si:dkey-266f7.5
XR_006247043.1 other downstream 437576 18184141 ~ 18188020 (-) False si:dkey-266f7.5
XR_006247042.1 other downstream 437578 18184141 ~ 18188018 (-) False si:dkey-266f7.5
TU198381 other downstream 614197 18010882 ~ 18011399 (-) True G134318
TU198368 other downstream 690160 17929689 ~ 17935436 (-) True s100a10a
TU198770 other upstream 235331 18876614 ~ 18933139 (-) False smim13
TU198769 other upstream 286238 18927521 ~ 18933139 (-) False smim13
XR_006246998.1 other upstream 901499 19542782 ~ 19652807 (-) False khdrbs3
XR_006246997.1 other upstream 901499 19542782 ~ 19652806 (-) False khdrbs3
XR_006247087.1 other upstream 1029504 19670787 ~ 19688386 (-) False LOC122324012

Expression Profile