RNA id: XM_043217174.1


Basic Information

Item Value
RNA id XM_043217174.1
length 2872
RNA type mRNA
GC content 0.48
exon number 11
gene id zgc:91944
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 9098865 ~ 9109003 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATTCACTTCCTGCATCCACATGGGACTGTCGCTGCGGGTGAGAGGTCAATTGTTGACTTCCATATATCCAGTAATATTATGCTGCGGCATCCCAGGACAATGTGACCCTCCTCGGATCACCTTCATTAGCTAGTTGAAGCGCCTCGGAGTGCAAGTGAGCGCACGGGAGGGCCGGGATACAACCCAGGGTGTGCACCGACCGCGCTCCAGCCGCACCATCTCCAACTCCGGCAGCAGTTTGACGGTAGCGCGGGGAGCCCCCCCTTGTCCCCTGCGGGTGACTCCTCGACCATGCGACAGTGGTGCCTTCCTGCTGTGGCTCCACGCGCCGAACCGCTCCCAACGGGCCGGTTATCACCTCAGATCTCAGATGTCAGGATGGAGTGTTGCGACGTGGAGCCGCGCTACACCATCGAACAGATCGACCTGCTCCAGCGTTTGAGGCTGTCAGGGATGACCAAACCTCAGATCATTCAAGCCCTCGAGTCTTTAGAGAGGCTCGATCCGGACCATCGTACCCCGTGCTGCAACAATCACTCGGCCCCACCCAGCGCCCCTACCTCCGCAGCCCCTGCtgctccctcctcctcctcctcttcctcctcctctcttaCCTCAGCCACCACGCAAACCCCTGTTATGGATGCTGCATTGTCGCCTAGCAACAGCTATGATGCCTCGCCCCCTCCCATGTACCCACCCAGCGGAGTTCAGAGGTCGTTTAGTTACGACTTGGCAGAAGAGGACTGGGATCTGGAGGAGAAGGTGGAGGAATACATGAGGAGGGACAGCAACCTTGttaaagaagaaataaaggctTTTCTCAATAACAGAAGGATCTCGCAGGCAATTGTGGGACAAGTCACAGGTATCAGTCAGAGCTACATCTCTCAGTGGCTTCTGCAGCAGGGTCTGGAGATGAGCGACTCCAAACGCAGGGCCTTCTATCGCTGGTACCTGCTGGAGCGCAACAGCCCAGGAATCAGATGGAGTGAAAACCAGCATGCTCAGGTCCCCAGGAGCAGGACTGACACTCCCTGGAATAGACAGAGAGAACTGCTGATGCACCTCCTCCCCTGGTACTCTGCTCACCAGTCCCAGTCAGGTGCCACACTGTCTATGCGTTCACTGGTTAAGGAGGAGCCTGACTGGAGGCTGGCTGGAAGCCCCGCAGACAGGGCAGCAGTCGGGCCTTTTAGACTGCGCAGAGGTAGTCGCTTCACCTGGAGAAAGGAGTGCCAGTCAATCATGGAGAGTTTCTTTATAGAGAATCAGTATCCTGATGAGGGCAAAAGAGAGGAAATTGCCAATGCTTGTAATGCTGTCATTCAAAAACCTGgATGCAAACTTTCAGAATTTGAACGAGTCACTGCACTCAAAGTGTACAACTGGTTTGCCAATCGGAGGAAGGAGATGAAGAGACGTGCCAACATAGAGGCTGCCATACTGGAAAGCCATGGGATAGAGGTGCCCAGCCCCAGCTGCCACTCCAACAGCGAAGAGGTCGAGACTCAGGAGTTTGGAGATCAAGTCATGAGTCAGAGGTTCTCTGAGCAGGAGGAGCTCTCTCAAAGAAAAGACATTGAGCCCGAAGGCGCCATGCTACCTCCAGTGGAAGTGGTGTCTCCTCCAAGCCCGACCTCTCAGCTCATAGAGCGGAAATTGAAAGAATCGAAAAGGGAGGCTACTGATGATGATTAACCAATGAGCCAAGTCGTATTTTTGTTCCAAAGTGGCTTGACGTGGTTGCCCTCAGCCAAGCCTGACACTATAAAATCTCTGGTGCCTCTAGTGGTAGGGAGGTATGTATCTACAGTAATCACGCTTGTAGTAATGGCAATATTTACTCTAAACAGTATATCGTGCATTCCAAGACAGTCTTAACGCTTCCCGTGAGAGGGAAAGACGCGTAAGGTGCAAACTAGTAACTTTCTCATTCTGCTAaagctgtttgctttcatttctCAGTGTTCTCATATACAACAGTTTCACCTGTTATTATTTCAAGCGAGCAGTCTAGAGAAACCTGCAGGACAGGTGATTAATTTGACAGAACGGGCGCACTGAACCCAGTTTGGAGTGTGAATTTTAAGAGCTTAACAGCCTCTTAATTGTCATATGCAATAGTTAAAGAATGAGATTGGATAGATACACCCCTAATAGATATGCCAACTCAGGTAGAACTAAACTTGGCAATTAAATGAGAAGTTTTCACCATCATAGAAATCAGTGTTTCTCACAATTATGGATCATTGGGTAGAAATGTGCCCTGTCTCAAGCATACAAGATTGTGTACATAtcgtttttcactttttttttttcagatgtgaTCTGGAAGTAATATTCAGATTATCATGGCTCTGTTTTGTATACACAACGATTGTAAGCTCTTTGTATCCAGCTACTTAAGCTATACTGACCCTGACTAGTGTGAGGGGTCTAAAATGCTTAAAGTTTCCCCCTAAAGTATTATTTGCTATAAGCATCATTTACTTACCTCTTTAATAAGGTAATGCAGTATGTAAAACTACAAGTATAATATTAGCATTTAATGCAACAAGCTGCTTTTCAATGGATTGATATCCACGGTTTGATTTTTCTGTGTCTTAACGAAAGCCAAAGCTAGGCCAAGTTGTAAAAGAATGCTTTTTACATGAACCGTGTCAAATAGACTCGACGATTGCTTAAGGCACATCAACGTGTCTCATGAGAAGCGCTTTGAGCGTGCAAAGGCTATAAGCTGCACAGTATGATTATTCTGGCCTATCAGCTCTGTACACCAACAGGATTCAATGCTGCACGCTGTCAAGGCCACCTACTCTGTGCTTTTTCCTAACGAtatcaaacaataaaatgaataaacaaatgtaa

Function

GO:

id name namespace
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194665 lncRNA downstream 17760 9080850 ~ 9081105 (-) True G131827
TU194658 lncRNA downstream 50414 9039948 ~ 9048451 (-) True G131820
TU194471 lncRNA downstream 178170 8920040 ~ 8920695 (-) True G131697
TU194441 lncRNA downstream 312136 8724506 ~ 8786729 (-) False hey1
TU194681 lncRNA upstream 32852 9141853 ~ 9217661 (-) True G131838
TU194699 lncRNA upstream 151333 9260334 ~ 9268308 (-) False G131852
TU194700 lncRNA upstream 151333 9260334 ~ 9269148 (-) True G131852
TU194701 lncRNA upstream 151333 9260334 ~ 9268308 (-) False G131852
TU194747 lncRNA upstream 383412 9492413 ~ 9494654 (-) True G131882
XM_043217591.1 mRNA downstream 22840 9071705 ~ 9076025 (-) True zbtb8b
XM_043217593.1 mRNA downstream 27870 9063758 ~ 9070995 (-) False LOC122323620
XM_043217594.1 mRNA downstream 27957 9068352 ~ 9070908 (-) True LOC122323621
XM_043217592.1 mRNA downstream 31437 9063758 ~ 9067428 (-) True LOC122323620
XM_043218395.1 mRNA downstream 43810 9049786 ~ 9055055 (-) False gmpr
XM_043217181.1 mRNA upstream 11915 9120916 ~ 9434515 (-) True LOC122323377
XM_043217966.1 mRNA upstream 111650 9220651 ~ 9223822 (-) True LOC122323857
XM_043217186.1 mRNA upstream 116262 9225263 ~ 9229774 (-) True LOC122323382
XM_043217184.1 mRNA upstream 145563 9254564 ~ 9259020 (-) True LOC122323379
XM_043217758.1 mRNA upstream 349312 9458313 ~ 9469633 (-) True nt5c1aa
XR_006247085.1 other downstream 341192 8751369 ~ 8757673 (-) False hey1
XR_006247069.1 other downstream 360079 8727259 ~ 8738786 (-) False si:dkeyp-120h9.1
XR_006247071.1 other downstream 777964 8289588 ~ 8320901 (-) False trit1
TU194205 other downstream 777980 8287294 ~ 8320885 (-) False trit1
XR_006247051.1 other downstream 969607 8121512 ~ 8129258 (-) False khdrbs1b
TU194713 other upstream 199719 9308720 ~ 9309352 (-) True G131861
XR_006246990.1 other upstream 550894 9659895 ~ 9664459 (-) True cibar1
TU195128 other upstream 1198957 10307958 ~ 10311928 (-) False elp2
TU195129 other upstream 1198957 10307958 ~ 10310675 (-) False elp2
TU195233 other upstream 2061269 11170270 ~ 11170913 (-) True G132219

Expression Profile