RNA id: XM_043217189.1


Basic Information

Item Value
RNA id XM_043217189.1
length 474
RNA type mRNA
GC content 0.50
exon number 2
gene id LOC122323385
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 5876050 ~ 5882974 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTATGATATGTCACCTCTCGTGAGCTTCGGCTTTGAGCTTTCAGCACGCTTTTCCAGTCAGACTCGGCGTGAAGTTATGGCTCACGTGTCGGCGGTGCGGGCTCTGTATAAGAGGATCCTGCTGCTGCACCGCTTCATGCCCGTGGACCTGCGGGCTCTGGGGGATCAGTACGTGAAGGACGAGTTCAGAAGACACAAGACCGCCACAGACGAAGAGGCGACGCGCTTCTTGACGGAGTGGCAGAACTACAAAGACACTCTACAGACGCAAGTGCTGGAAGCGGTGGGAAACAAGAAATTGGAGTTTGGCTCTGATTTATCGGAAGAGAAACTCAAAGACTTTCAAGATGAACAGATCGGACAGCTTTATGAGCTTATGCTTGAGTCCACAAAACCAAACCGACAGTTTGATATTCAAGAAGAGGGAACGCCAAAGTAACACACCCTCTGAAGGGAAAAAGGACTCTTTATCTC

Function

GO:

id name namespace
GO:0005739 mitochondrion cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193274 lncRNA upstream 88251 5785130 ~ 5787803 (+) True LOC122323983
TU193233 lncRNA upstream 201210 5674295 ~ 5674844 (+) True G130861
TU193228 lncRNA upstream 205522 5659533 ~ 5670532 (+) True G130858
TU193224 lncRNA upstream 243626 5614264 ~ 5632428 (+) True G130855
XR_006247088.1 lncRNA upstream 264090 5611112 ~ 5611964 (+) False LOC122324017
TU193275 lncRNA downstream 40058 5923032 ~ 5953470 (+) True G130893
TU193270 lncRNA downstream 47878 5930852 ~ 5932792 (+) False G130891
TU193271 lncRNA downstream 47878 5930852 ~ 5932792 (+) False G130891
TU193272 lncRNA downstream 47878 5930852 ~ 5932842 (+) True G130891
TU193325 lncRNA downstream 284652 6167626 ~ 6169359 (+) True G130940
XM_043218135.1 mRNA upstream 88261 5785131 ~ 5787793 (+) False LOC122323983
XM_043216946.1 mRNA upstream 123137 5745830 ~ 5752917 (+) False LOC122323254
XM_043218150.1 mRNA upstream 136869 5725368 ~ 5739185 (+) True col28a1a
XM_043218065.1 mRNA upstream 158373 5716696 ~ 5717681 (+) True rpa3
XM_043216990.1 mRNA upstream 261924 5613068 ~ 5614130 (+) True LOC122323266
XM_043217546.1 mRNA downstream 178575 6061549 ~ 6162543 (+) True jarid2b
XM_043217804.1 mRNA downstream 351051 6234025 ~ 6252339 (+) True mylipa
XM_043218022.1 mRNA downstream 383409 6266383 ~ 6344260 (+) True npr1a
XM_043218095.1 mRNA downstream 463815 6346789 ~ 6361192 (+) True ints3
XM_043218448.1 mRNA downstream 482544 6365518 ~ 6377599 (+) False gon4la
XR_006246984.1 other upstream 123272 5745801 ~ 5752782 (+) True LOC122323254
XR_006247105.1 other upstream 290399 5583505 ~ 5585655 (+) False LOC122324139
TU192862 other upstream 561876 5223700 ~ 5314178 (+) True G130640
TU192863 other upstream 561876 5223700 ~ 5314178 (+) False G130640
TU192837 other upstream 696377 5176275 ~ 5179677 (+) True LOC122323259
TU193467 other downstream 580109 6463083 ~ 6488760 (+) True G131047
TU193457 other downstream 636946 6519920 ~ 6526080 (+) True G131042
TU193617 other downstream 809000 6691974 ~ 6695456 (+) False ppp1r11
TU193614 other downstream 809092 6692066 ~ 6696204 (+) True ppp1r11
TU193616 other downstream 809092 6692066 ~ 6695456 (+) False ppp1r11