RNA id: XM_043217214.1


Basic Information

Item Value
RNA id XM_043217214.1
length 3808
RNA type mRNA
GC content 0.47
exon number 7
gene id hcn3
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 17695970 ~ 17706893 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTCCTCTGGCGCAGGTTGGCCCCGCCCATTTCCTCCCGCTGAGGTGTGACGCTCTCTCCCTACCTGTTCATCCCGACAGCTTGCCGAACAGATAACACGCAGGTGTCAGCAGAGAGGGAGATAAAGACGGCGCCTGCCACCAAGAAGCCGATTATTTTCAAACCTCTGCGAGCCTCGTCCCGTTCTTCATGTAATAACTGACGCGTGATTGGACAGCGAGACACCCCGCGCGCGTTCCGGGGAGAATCCGCCCGCGCGCGAGTCGGTAGATGTGCGGTAAGTGGATACCGGAGAATAATATTGACAATAAATGCGCTCGTTCCCAGAGGAGCTTTCCAAGGGCGGGTGAATTACGCAGAGAGGGACGTCTGGATTCTCTTTGGAAGTTTTGGGAGTCCGTTTGCGCCGGTGAACTTTCAGTAGCCTAAAAACGGTAAACAGACATGTTCGGACTTTTTGAAAACGCTGACCTAATGCTCCCCGTTCATGCTCAAGAAAGAGTTTAAAATAAGGTTAAGTTTGCGTTATGAGTATTTAAAGACGAATCGACGAACGCGTCCGTCTTAAAGAAGTGTTAAAATCATTAGTTAGACCGGTTTGTATTGAAAACCCGAGGGTTTCGTGTCCGAACCTTGGTTTCATAATACAAAAGGGTTCTGGATTTGGAAAGCATCATGTCCTCGTTCGCTTTTTGAGACTCCACCTGCCAAACCGGTCATCAACCCGAACCTGCATTAACTGAATCTGAATTATGGATGGTGACGGACAGCCTCCGGCTTCGAATGGTGACTCGAAGCTCCGCTCCAGAGGAGGCCTCTCCTTAAACAACTGGCGTTCCTCTTCGCGGACTTTGCTGCGAGGAGAGCGGGCGGGAGAGGCCGTGAGCCGAAGGCTGCTGTCCGTCGTCAACCGCCAGGAACGCACCGACTCGGGGGCCGGTCCCGCTTCGAAATCCCTTGAGGTGACCGCGGGGTTGGATGGAACGACGGCAACCACCGCCGTGACCACGTCCACTCCGCCTTTCCTCGACAAAGCCATGGCAGAGTCAACAGGGCCCGCCGGAGCCTCCCAGGCATCTGGGTCCGAGGAAGGGGTCTTCCACGACCAGTCCACGTTTCTCCAGAGACAGTTCAGCTCCATGCTGCAGCCGGGGGTCAACAAGTTCTCTCTGCGCATGTTTGGGAGCGCGAAGGGTGTTGCGGCGGAGCAGGAGCGGGTCAGGTCATTTGGGGTTTGGATTATTCATCCATACAGTGACTTCAGGTTTTATTGGGATTTGGTGATGCTGTGCCTGATGATGGGCAACCTCGTTATTCTGCCATGGGGCATCACCTTCTTCGAGGATCAGAACACGCTGCCGTGGATCACCTTTAACGTGGCCTCCGACACCctcttcttggctgacctcgTCTTCAACTTTCGTACCGGCATTATGGAAGGAGATAACACGCAAATCATCCTGGACCCGCAAGTGATTAGTCGGCGTTATCTGCGAGGCTGGTTTCTGGTGGACTTCATCTCCTCCATTCCTGTGGACTACATCTTCCTGGTGGTGGATATAGAGGCACGGCTTGAGTCGGCAGAGGTGTACCGCACCGCCAGGGCTTTGCGCATCGTACGCTTCACCAAGATCCTCAGCCTGCTCAGATTGCTGCGCTTGTCCAGACTTATACGTTACATTCATCAGTGGGAAGAGatcTTCCATATGACCTATGACCTTGCGAGCGCAGTAGTGCGCATAGTGAATCTGATTGGAATGATGCTGCTGCTGTGTCACTGGGACGGCTGCATGCAGTTCATGGTGCCCATGTTGCAAGATTTCCCGCCCAACTGCTGGGTCGCCAAAAACAACATGGTGAATTCCACTTGGGATGTCCAGTACTCTTATGCCCTTTTTATGGCCATGAGCCACATGCTGTGTATTGGATATGGTGCTCAGGCCCCCGAGGGACCAACTGACGTCTGGCTCACGATGATCAGCATGATTATTGGCGCCACCTGCTACGCCATGTTCTTGGGCAATGCTACCAACCTGATCCAGTCCTTGGATGCTTCCCATCGGCAGTATCAAGAGAAGTACAAACAGGTGGAACAGTACATGTCCTTCCACAAGCTGCCGGCTGACATGAGGCAGAGGATCCATGATTATTATGAGCACCGCTTCCAGGGGAAGATGTTTGACGAAGACAATATCTTTGGAGAACTCAATGACCCACTAAAAGAGGACATAGTCAACTATAACTGCCGTGAGCTGGTGGCTAACATGCCACTCTTCGCGAACGCCGATCCTCACTTTGTCACCGTGCTCCTCACAAAGTTACGCTTCGAGGTCTTTCAGCCGGGTGATGTCATCATCCGTGAAGGGACTCTCGGTCGTAAAATGTACTTCATCCAGCACGGCTGCGTCGGTGTGATCACTCACGAcaacaaagagaagaaattgaACGACGGCTGCTACTTCGGCGAGATCTGTCTGCTGACCCGAGGCCGTCGTACAGCTACCGTCAAAGCGGAAACGTACTGCAGACTTTATTCGCTCAGCGTGGACAGCTTTAATGAGGTCTTAGAGGAGAACCCGTTAATGAGGAGGGCGTTTGAGAGCGTAGCGGTGGACCGGCTGGAGCGGGAGCGGGAGGGAAACGGCATCGTGCATTCACAAAAGAGCGTGGAGGTTGACTGACCAGAGACTCACCGAAGAtgactgaatgtaaaaaaaaaaaagcaaaaaaaaatatcatggtGTTACGGTGTCCATATAATTGACATTAATGTACAGTTGCAGTATGGTGTGATTAATCTAATTTCTTATTCTCAATTTCACAATgcaatgtaataataaacaatagcaGCCCTTTTGATATTCTTAAGATACTGgatttatgtcatttatttcagtcGGAAACCATAAATTTAGCAAGTacctatatatattataatacaagtaaagatacaataaaattaaatgaacatagcacaaaatattacaaaagtttTATTGCTTCTACTAAGCTCCTATGGTATCAAGTAGTCAAGGAATTGCTTCCTCTAAGTTTTGCGTTTAGCAAAATATCTCCAAGGCGGTTTTCAATATGTTAACTCAGTACAACTCTttgaaattctttaaaaattgctttaatttCAAAACGTCCAGCCGGCCACCAGCATATAACAGTGTTGCGCTCGTCCACTCGTCCTTTTATTATTGTCGTGCTGCTGGTGGAAGGTCTCTGGATTTGTCATTGATTATAGCTAATCAAATCGAGGTAaatcaatgaaagaaaaaaagttgaaaataatacttaatccaataatataatgaaattttATCCGCTTTCCTGATCAACATCGAACACTAAAGAATCGCGCACTGTAAGAAAAGATGTCTGGTAGCTGAAAGACACGGATGAGCTGGGACATCTGCTCATTGTCCTCTTAACttcaaattaaagtattaaacaaTATGAGTCACATAATCGCTGATTAAACTCATTTCCGTTTGGCCTGAGCCCTTACTTATCTGTGATAATCGGTTGTGACGAAAATAACCCTTTGAGAGAAGGTTGTTTTCACGTGTTTTTAAGGGAATATTTGCTTAGGAGCTTAAGTGATACGCTCATTTCAAATTCTGTTTTGTTAGTAACATTTCTGCTCTTCTCTGTGtttggaaataaaaacagaaatataactCCACATAATGTGTGATACTAGAGAGATGAGGAGTATTATGGAAAACTGAGATTTTGAATATAATGTTCATTTGATGTGTTTCATATGCCACTATATTATTAAAGTATGTTATTAACTGTT

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0042391 regulation of membrane potential biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005249 voltage-gated potassium channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198258 lncRNA downstream 25276 17598064 ~ 17670694 (-) True G134247
TU198267 lncRNA downstream 50337 17620174 ~ 17645633 (-) True G134252
TU198250 lncRNA downstream 101646 17589996 ~ 17594324 (-) True G134245
TU197866 lncRNA downstream 350754 17325331 ~ 17345216 (-) True G133970
TU197844 lncRNA downstream 406590 17287667 ~ 17289380 (-) True G133951
TU198296 lncRNA upstream 82134 17789027 ~ 17789326 (-) True G134272
TU198298 lncRNA upstream 82658 17789551 ~ 17798825 (-) False G134273
TU198299 lncRNA upstream 90172 17797065 ~ 17798825 (-) True G134273
TU198352 lncRNA upstream 145279 17852172 ~ 17857186 (-) True G134299
TU198337 lncRNA upstream 162238 17869131 ~ 17871519 (-) False G134298
XM_043218144.1 mRNA downstream 1204 17688665 ~ 17694766 (-) True ndufv1
XM_043217408.1 mRNA downstream 10049 17662990 ~ 17685921 (-) False kmt2ba
XM_043217407.1 mRNA downstream 10050 17662990 ~ 17685920 (-) True kmt2ba
XM_043218170.1 mRNA downstream 33881 17658059 ~ 17662089 (-) True si:rp71-15k1.1
XM_043218169.1 mRNA downstream 33990 17658059 ~ 17661980 (-) False si:rp71-15k1.1
XM_043218187.1 mRNA upstream 1121 17708014 ~ 17710108 (-) True si:ch211-81a5.8
XM_043217506.1 mRNA upstream 4457 17711350 ~ 17720489 (-) False clk2a
XM_043217505.1 mRNA upstream 4457 17711350 ~ 17720489 (-) False clk2a
XM_043217507.1 mRNA upstream 4457 17711350 ~ 17718113 (-) True clk2a
XM_043217508.1 mRNA upstream 4457 17711350 ~ 17718106 (-) False clk2a
TU198224 other downstream 79732 17613480 ~ 17616238 (-) False LOC122324164
TU197840 other downstream 361736 17330697 ~ 17334234 (-) True G133948
TU197841 other downstream 411226 17283332 ~ 17284744 (-) True G133949
TU197783 other downstream 477221 17217788 ~ 17218749 (-) False LOC122323474
unassigned_transcript_2205 other downstream 795194 16900705 ~ 16900776 (-) True trnap-ugg_15
TU198368 other upstream 222796 17929689 ~ 17935436 (-) True s100a10a
TU198369 other upstream 222796 17929689 ~ 17931750 (-) False s100a10a
TU198381 other upstream 303989 18010882 ~ 18011399 (-) True G134318
XR_006247044.1 other upstream 477248 18184141 ~ 18188021 (-) False si:dkey-266f7.5
XR_006247043.1 other upstream 477248 18184141 ~ 18188020 (-) False si:dkey-266f7.5

Expression Profile