RNA id: XM_043217245.1


Basic Information

Item Value
RNA id XM_043217245.1
length 2501
RNA type mRNA
GC content 0.50
exon number 4
gene id irx1b
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 6977815 ~ 6981426 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAATTtgccattcattttaatttcagtaagCTAAAGATATTGAAACATGTTTGAAATGGTAAATATTTAACTGTAGCTCTGGGAGTATCTCTTAAGATTTATAcgtgttttttatatttaaaaaaaacaatgtcagCAATAGGCTGTCCACGAGTTATTTCTACTTCTATAAATCCGCATAGGCGATAtagtttacagtaaaaatgcgTGCGTCGCCTTTTAAAATGCCTCCGCATTCCTGCGATTCCTTAACTTTACCCGCAAcacttttgcattatttattacgTTTAAACCAACAAAAACGCGTCGTTTTAATCTTAAAGTTAGTTCAGAATGTCAAAATGTCTTACGCGTGGCCTGAAGCAACATAGCGTTTTGATATAGTTTTAATGTCTATTTAGTGTTCGGCGTTTGTTGTCATATTGCACACTTTCACGCGCTCCGTTTACGCCGCCACGCAGTAATACACACCGCAGCCTACTTATCGCGTGGCCTCGGATAGGAGGGGCCTCGCGCTTAAGTAGCATGCCAATCAAGCCGTCAACTTCAAATTGTGAGAGGTCCAGAGGGTAGACGCATCAGCAGACGTTCCTCCTGACGAGACCGCGCTTCTGCACCAGGCGAGAGTTATCGCTGTGATCGAAAGTGGATTGCTCTTCTCTCTTGTAAATCTCCGTCAGAGTTCCTCGGGAGTTGGACATGTCGTTCCCCCAGCTGGGTTACCCGCAGTTCCTCAGCGCCTCCCAGGAGGTGTACGGAGCGGAGCGCGCGGCTGCCATGCCGTCCTCCCCGCGCGAGGGAGGCTCGGAGAGCGGCGCAAACCCCGCGAGCGCGGCGGCGGCGATCACGCCGATGCTCGGCATGTACGCGAATCCGTGGACCGTGCAAAACTACAGCGCCTTCCTGCCTTACAACAGCGCCGAGCTGGCCCTGCTCTCTCAGATGGGGTCGCAGTATGAGCTGAAGGATAACCCCGGGGCACATCCACCAGGATTTGCAGTCCACGCTGCGCCCGGTTTCTACCCATACGGCCAGTACCAGTACGGTGACCCGGCCCGGGCCAAGAGCGCCACCAGAGAGACCACCAGCACACTGAAAGCGTGGCTGCAGGAGCATAAAAAGAACCCGTATCCCACCAAGGGCGAGAAGATCATGCTGGCCATCATCACTAAGATGACCCTCACGCAGGTGTCCACCTGGTTCGCCAACGCGCGCCGGAGACTCAAGAAGGAGAATAAAGTGACCTGGGGCCGCAGCGCGGAGGACAGAGACGGGCGAATTTTTGACAGCGACAACGAGGACGACGCGGACAAAAACGACGACGAGGAAGAAATCGACCTCGAGACCATCGACATGGACAAGCCCGAGGAGTCCAGAGGAGAACAGAACAAGGAAAGCTCGGATAAtcagagcgaaagagagagcgTGGGATCGCCGCGGATATTATCCTCTCCATCGGCGCTTAAAAACGCGGACAGCCCTGTGTCGAGTAGTAATAAAGAACAGAGCGCGGTGAAAAGCGTCGGCGAGGTGTCTCCGGGCGGCCCGGTGTGTCAGAGGCCTGGGAACAGCAAACCCAAAATCTGGTCCCTGGCGGAGACGGCGACGAGTCCCGATAACGCGCAGAAACTCGGCGTCTCCCCGACGCCCGCGGGCCTCAGGGCCTCGCCCTCGACCCATCCCGCCTTCCTCTCCACTAACGGGATTTACACGTGCCAGATCGGGAAACTACACAACTGGGCGAGCGCCGCTTTCCTCAGCGCGAACTCTCTGATGGGCGTGCGTTCGCTCTTGAGTCAAAACGGCAGCTTCCCAAACGGGCCCGTTACGAACCCCGAGAAGAAGCCCTCGTCCGCCTCCGGCTCTCCCTGTCTAGACAGCGACAACTCATCCGACGGGTTCAGCCCCAAACACAACGATCAAGAAAACGTTCAGAGAATCGAATCCCCGCCGCTCGCGTCCAGACCGCCGTTCCCAGTCATCCACGACAGGTCTCACCACGAAACATCACAACGCGCCCTGAAGACTATTTCGTGAACACAGAACTTATCAGAACCTCTAAATTATTTAACGAAACTAAAATGTGACAACACAATAACAGCATTCAAGTCATCGGACAgaccaaaataatttttgtatttctcaATACGCTCCCATcctgcaatatataaatatatatatctatttttttgtattttcattttgatttcatttcgGCATGTTTCAGTTTTCCGTGTAGCCCGCCTCCATTTCTTTTACAGAGTTAATAAGAGTATTTGTCAGAAATTgtgaaaatgatatatttttgtgtaataaagaaaatgagatGAATTGTGTTACTGAAATCTATTATCTTTAGTTGGATAACTGAGTTATTTATTCACGCGCCATGACTTGGTGAAGACACTTCGGTTAATGCTTGCTTCTTTAATTGCGAGGCGAGTAAATTATATGTGCGAATGGTATAAGTGGAATAAATGCTATTAATAAATGGGGAATAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030902 hindbrain development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247094.1 lncRNA downstream 92372 6883962 ~ 6885443 (-) True LOC122324041
TU193728 lncRNA downstream 125687 6850369 ~ 6852128 (-) False srd5a1
TU193683 lncRNA downstream 217367 6760174 ~ 6760448 (-) True G131166
TU193682 lncRNA downstream 222380 6754414 ~ 6755435 (-) True G131165
TU193673 lncRNA downstream 269750 6706239 ~ 6708065 (-) True LOC122323439
TU193811 lncRNA upstream 62081 7043507 ~ 7044962 (-) True G131265
TU193857 lncRNA upstream 224763 7206189 ~ 7254556 (-) True G131296
TU193873 lncRNA upstream 278869 7260295 ~ 7262610 (-) True G131305
TU193896 lncRNA upstream 372718 7354144 ~ 7355469 (-) False G131318
TU193897 lncRNA upstream 372718 7354144 ~ 7355700 (-) True G131318
XM_043217669.1 mRNA downstream 78010 6889271 ~ 6899805 (-) True ube2ql1
XM_043217156.1 mRNA downstream 119155 6851827 ~ 6858660 (-) True srd5a1
XM_043218290.1 mRNA downstream 128127 6834886 ~ 6849688 (-) False tent4a
XM_043216939.1 mRNA upstream 60687 7042113 ~ 7043346 (-) True ndufs6
XM_043218062.1 mRNA upstream 92960 7074386 ~ 7232127 (-) True nrsn1l
XM_043218063.1 mRNA upstream 92960 7074386 ~ 7080750 (-) False nrsn1l
XM_043218061.1 mRNA upstream 92960 7074386 ~ 7079872 (-) False nrsn1l
XM_043217946.1 mRNA upstream 253381 7234807 ~ 7238683 (-) True sox4a
XR_006247131.1 other downstream 273878 6703871 ~ 6703937 (-) True LOC122324261
XR_006247130.1 other downstream 274426 6703323 ~ 6703389 (-) True LOC122324260
TU193649 other downstream 328426 6648438 ~ 6649389 (-) True polr1h
TU193577 other downstream 338595 6631189 ~ 6639220 (-) False sh3bp5lb
TU193406 other downstream 614643 6362347 ~ 6363172 (-) True G131006
TU193894 other upstream 375195 7356621 ~ 7360111 (-) True LOC122323893
TU193918 other upstream 413754 7395180 ~ 7397946 (-) True LOC122324169
TU193992 other upstream 620707 7602133 ~ 7605143 (-) True G131373
XR_006247052.1 other upstream 1137523 8118949 ~ 8129270 (-) True khdrbs1b
XR_006247051.1 other upstream 1140086 8121512 ~ 8129258 (-) False khdrbs1b

Expression Profile