RNA id: XM_043217247.1


Basic Information

Item Value
RNA id XM_043217247.1
length 1852
RNA type mRNA
GC content 0.48
exon number 9
gene id rnf115b
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 17772595 ~ 17779156 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACAGGAGCTATTAAAGAGTGAAGATGGCGGAGGCCGCCGCTGCTGCCGCTCCACGACAGCGGTTCTTCTGCCACTGCTGTCGAGGAGAAATCGACCCCAAGATGCCGGAATACGTTTGTCCCAGATGTGAATCTGGCTTCATTGAAGAGGTGTCAGAGAACTCAAATCTTCTTCAGAGTCGAGATGGTGCTGGCGAAGCTGCTGTCGGTGGAGATGACATGACTTCACAGTTCGCAGAGCTGTGGCAGCTGCTCTTCATGGAACATTCAGCGCTCCTCTCCGAGCCCACCATCACAGACGCGCTCCGCAGCCGCTCAGGGGTCGAGGCAGCAGTTGGTGATCCTGCCCCTGGGACAGCGGGACCCGGAGCGTCCGTGGAGGCGTCGTCAGACTGTGCAGAGCCTGTTCTCCTCCCTCAACAAAACCGCCAGCAGAGAAACTCTAGACCGGCTCAGGGACAGGCTGTGGAGGGGATTGTCCAGCAATTCCTGGCTGGTCTGTTTTCTAATTCTGACGGTGCAGGATCCCAAACCTCCTCGTGGTCTAGCGTGCTGCACTCAAACCCTGAGGATTATGCTTGGGGACAAGGAGGTCTGGACGTGGTCATCACACAGTTGCTCGGTCAGTCTGAAAACACCGGGCCCCCTCCTGCTGAGAAGGAAATAATCTCATCTCTCCCCACCGTTAGCATCTCCTCAGAACAGGCTGcatGCCGACTGGAATGCCCTGTGTGTAGAGAAGAGTACTCTGAAGGAGAATCTGTCCGACAGCTGCCCTGTCTGCACTACTTTCACAGCAACTGTATTGTACCCTGGCTACAAATGCACGACACCTGCCCTGTCTGCCGGAAAAGTCTGGATGGTGAAGACCAGGGTTTCCAGCCACAGACGGGACCTCCAGGGGCAATTCCCTCACCGACGAATGTAGAGGAGCGTAGCACATTTGAGACTCTTTAGCCTCCTTTTCCTTCACTATTCTGATCAATCCAGGACAGAGAGAGTGCTTCGCAGAGCCCCTAAACAGAGTGCCttctatttcaaaagacatttCAGCTGAGGCTCTTTCAGCCAGCATCTGTCCCATTACCATTTATATCCATTAATTGTGTTTCTGCGAAGTACAGTTGTGCCCAAAATCCTACCAATGATGTTTACAGTCCAACCCGAACTTACATATTTCAACTAACACAACACGTGGAACAAACGCGGTCTCCGAGGTGGGCCGCGGGCCTGGAGCTCATGAGCTCTGAGATAGATGATACAGATGTCTCAGGGGATACAGTTCAAGTTtcatgtgcatatttaatgGCATGGCACACGTTTACCCTATAGCTTCTTcaaagcttttgttttattacctcACGACGAAGTGAGCACACGGTTCACTTTCCCTTACCTGTCAGTGGATGACATCTGCTCCGCACATGCCTTCACTCTTATAAGGGCGTCATAGAAACGCAAAGATTTAGATGCTTGCTCAAGTTTTGCACTGTGAGGCGTTTCGTCTATTGTACTGTACATGTTTTGGGTTGATAGTTTGCACTGGTGTTTTCTGTTTGACATTGCTATTTTATGAGTTCTTGTGgatagacagaaaaagaaacatgtttattgtgttttaaagccgtttagatttctttttggtgcttttttttgtgctaatcATCAGGGATCCTTGACTGCTCCATAgtttaatattgaaaaacagTCCCACTCATAATTTGACATTACAATATGACATTATAGCACACAGATAAAAGGTAAAatgtttacaagaaaaaaaatacctttaCCTACAGGCCAACCTGTTACATATTGCACTCtcaaactaataaatatttaagagaaGAAA

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11982 RNF115_126; E3 ubiquitin-protein ligase RNF115/126

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198258 lncRNA downstream 101901 17598064 ~ 17670694 (-) True G134247
TU198267 lncRNA downstream 126962 17620174 ~ 17645633 (-) True G134252
TU198250 lncRNA downstream 178271 17589996 ~ 17594324 (-) True G134245
TU197866 lncRNA downstream 427379 17325331 ~ 17345216 (-) True G133970
TU197844 lncRNA downstream 483215 17287667 ~ 17289380 (-) True G133951
TU198296 lncRNA upstream 9871 17789027 ~ 17789326 (-) True G134272
TU198298 lncRNA upstream 10395 17789551 ~ 17798825 (-) False G134273
TU198299 lncRNA upstream 17909 17797065 ~ 17798825 (-) True G134273
TU198352 lncRNA upstream 73016 17852172 ~ 17857186 (-) True G134299
TU198337 lncRNA upstream 89975 17869131 ~ 17871519 (-) False G134298
XM_043217515.1 mRNA downstream 2808 17741746 ~ 17769787 (-) False ash1l
XM_043217517.1 mRNA downstream 2821 17741746 ~ 17769774 (-) False ash1l
XM_043217516.1 mRNA downstream 3004 17741746 ~ 17769591 (-) True ash1l
XM_043218156.1 mRNA downstream 31580 17736186 ~ 17741015 (-) True lrrc71
XM_043218338.1 mRNA downstream 37185 17721000 ~ 17735410 (-) False setdb1a
XM_043218148.1 mRNA upstream 1663 17780819 ~ 17788099 (-) True scamp3
XM_043217265.1 mRNA upstream 13203 17792359 ~ 17794960 (-) True crabp2b
XM_043217635.1 mRNA upstream 137344 17916500 ~ 17929196 (-) True snx27a
XM_043218271.1 mRNA upstream 151634 17930790 ~ 17934901 (-) False s100a10a
XM_043218270.1 mRNA upstream 151634 17930790 ~ 17931575 (-) False s100a10a
TU198224 other downstream 156357 17613480 ~ 17616238 (-) False LOC122324164
TU197840 other downstream 438361 17330697 ~ 17334234 (-) True G133948
TU197841 other downstream 487851 17283332 ~ 17284744 (-) True G133949
TU197783 other downstream 553846 17217788 ~ 17218749 (-) False LOC122323474
unassigned_transcript_2205 other downstream 871819 16900705 ~ 16900776 (-) True trnap-ugg_15
TU198368 other upstream 150533 17929689 ~ 17935436 (-) True s100a10a
TU198369 other upstream 150533 17929689 ~ 17931750 (-) False s100a10a
TU198381 other upstream 231726 18010882 ~ 18011399 (-) True G134318
XR_006247044.1 other upstream 404985 18184141 ~ 18188021 (-) False si:dkey-266f7.5
XR_006247043.1 other upstream 404985 18184141 ~ 18188020 (-) False si:dkey-266f7.5

Expression Profile