RNA id: XM_043217257.1


Basic Information

Item Value
RNA id XM_043217257.1
length 3328
RNA type mRNA
GC content 0.42
exon number 6
gene id si:ch211-152p11.4
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 6716739 ~ 6725694 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGGcattctctgtgtctgtctttctttcctttaaaaTCCGGCACAATGCTGCGTAAGTTCAGTTCAGAGGGCGCCTTGTTGGAGCTGGATTTCCTGCCCTGGGATAGAGATGGGACCCCGGACACCTTGGACGATCAGCCAGATGGAGCCTCAGCCTCCTATCCTTGCACCCCAGATGCAAAGTCAGGGAGTGCTGGAAAGGGGGAGCTTAAGAGAGATCACAGCATTAGTGTGGAAAATCTGGTGGACTTGGAGAAGGACCCCGGGTTACTGAAAGTGACGAATCTTAATGAGAGTTTTAAAGCGTACAGCGACAGCCAGCTCACTGCCAACGTCAAAGGCAGCTGTGAGAGTGTGGGAAAGTGTGAAGGCCAGCCCTACTCGACGTCATCCTCGCTGAAATCCGGCCATATGCCCGTCTCCCCGAAACCTCCCCACCATCACCGGCAGCAGGCTCGGGCCAAACTGACAGCTGCTAAATTACACCTTAAAAGCTTGTTTGGACAGGGTTCGCCGCAGTCTTCTCATTCAAATCTGGCCAATGCAGAGCACAGAGAGAACGTCACCAGCGCTAAAGAGAGGCGTTCTCGAATGCCTTTCCTCCGCCAGTGGAGTCAGGTGGGCCACGGCAAAGCTCGGCTCAGCAGGGCGGAGATGGAAAGTTGGGCCAAGTCCCTCGACGCGTTGCTGGAAAGCAGAGTGGGCGTCACGGTCTTCGAGGCCTTCCTGCGATCCGAGTTCAGTGAAGAAAACCTGCAGTTCTACACGGCCTGTGAGCAGTACGGACAGTCGTCCAATAAATTCAGCCTGCAGAGACGGGCCAAAATGATTGCTGAGACTTACATCCAGCCTGGTGCTCCCAGAGAGGTGAACCTGGACAGTAAGACGAGAGAACTGACCCTGGAGCTCCTCAAAGCCCCCTCGCACACGTGCCTCTCTCACGCCCAGAGGCGCATCTACTGCCtcctggaaatggactgttacCCCCGTTTCCTCCAGTCGGAGATCTACCTCGCATTACTGAGGGATTCATATGAAAACTAAGAGCGGGCGAAATGTCCGAAAGCGGGTTCATCCTAAAAACTGAACGGACATCATGCGTGGACAGTGGAGACTGCAAACGTCTAAAATCATCGGAACTActgaagagaaacagaaaggGGATCGTCTTGAACGCCATCGTCTTGAGGCAATGAGGAATGAAGTGCTTCGAACATTTTACAAGCAGGAGTTTTACTTGCTAGATATCACTGGACTAAATGGCATGTTGACCGGCAACAAAAGGAAGAAACACGTCTGGCAAGAAAGGGCTGTTCAGTGAAAGTCTGGAGCGATCATCAGGGTCAGACCATCCTTTGACTCCACCTGCATGTGGTTACAAAGAAATGGCACTAACGACTCATTCCTCAAATTTATCAATAATTATAGAATATAGCTAAATGCATAAACGAAAACTCCAGCTCTCAGCAAGACAAAAATTCAAACGGCCCGCTATCCGAATAAGCAATATGAACACCATTACGTTAAATAAAAGTTGAAAGCGTCCTCGGAGGCCAGACGGAtggtttgtgtttaaaatgcgTATTAGCACACTGTGATTTTACGGTCACGGATTGCATACTAAAGCTGCTGTACAAGTCATTCGTTTCAATACTTTTGACTCGAGATAAAGATCTGGGCCCGGTTGCATGGAAGTCTTTAAGCAATTTGACTTAGGGCTATTCCcgaggggggaaaaaactcCCTGAGCTAAGAGATTTCTTTTTAAGATCGTTGCAACAAACGTCACCGATACCGAAGTGTTTAAACGAAGCATTTCACAGTAGTTTCTGGCAACATATGGTGACGGGCGCCGCAGTTGCCATAGTTAccacaataaatacaaacttaACTAAAACGCCAACAAATAAACGAGCGCTGGCTGTTTCTACGTCGCCTTGTATGCAGGCGTTACCGAAGAAAGCGCCCTTTCTTCTATCAGGaagataaaacattacacaaatCTAACTAATTAAAGgcatacattaatttatatcgttatttcatgtaataattgattaataatcgtttacatatttataataatcgATATTAATCTCAATTACAACTCCATTTTCctaacaaaatacataattgaAAACCTGCAAGTCAagttttttacagtttcatGTTACGGTAGTCATTGCCATactatgcatatattatattttatttgcgcAGGTCTTAAAAATGTCCCAAGTGTTTAATCTGTGCTTGAAAATCCTAAAAATACTGCGTTTAAGATTACTTGAAGCCGTTTTGATCCCTTACATTTATCAAGGTGAAATGGTTGCCAGGGACTTTGTAGCAACACTTAAGCGAAGACTTAAGCGATTAAGGGAAATACTTAAGTGACAGCCTTAACTTCCCTTAAGTAAACCCTGCCATCCATGTTTCTCTAAGGGTACCTTTAACCTTATAATTAAGGGTTTTCTTGTCTTAAGGGTCATGCAACCGGCCCTTGgcccttttaaaaatctaaatagtaCGAACTGATGTTATTATAAAGGTTTTTTAGGTAATTGTAGAAGTCGGTAAATGTCACACATACTTAAATGACActctaaatggtttaaaatgcagACATCAGTGCTAATACCATCCCATAAGCACACATACATTTCCTACTTCTTCAGTTAAAGAGCAAATGATCTGAAGAGCACTGTATTCTTATTATTGTGCACCTATGTCCACTTGATCATCTGAAAGGCAACATTTTTATCACGTATATTCCAGATGAACGCACACAGTGAAAACTTGAGAATGAAGGGCTGTGATGTGCTGTTTGTATTTTAGTGGCTCTAGATGATATCTGCTGTGACTGACACACTGAAGACGGTACATGTATTATTACTGTAGACATGCGCTAATGTTCTCCAAGGCTTAAATCTGTTCGAGTATACTATAAATGATTTCCTTAAGGGAATGATGTAATTATGTGATCAGTGTACAAGAATGAGCATCAGATGACCATTAAGAGTCTTTATGTTTGTTTGAGAGCAGAGATGAAATTGAATCGAAAGGAACAAAATGTTCaaccatttaatttatttccacaaaaaaaaaaaaaaaaacgtctgtaCTTGCATAGACccgtttgtaaaaaaacatgataaaagatCATATTATAGAATTGCGATTATAAAAGCACAAGCCATAAAATGAATAGCTGTAGTTTATAAATAggactgataaaaaaataaaaaaaaaagttacatatgGCTGTTGATGTTATTTTCATTAGAGGTCTTTTTCACTTTTGTGGTTTAATAAAAAtttctaaaaatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193673 lncRNA downstream 8674 6706239 ~ 6708065 (-) True LOC122323439
XR_006247006.1 lncRNA downstream 9636 6702483 ~ 6707103 (-) False LOC122323439
XR_006247005.1 lncRNA downstream 12256 6702483 ~ 6704483 (-) False LOC122323439
XR_006247004.1 lncRNA downstream 12256 6702483 ~ 6704483 (-) False LOC122323439
TU193656 lncRNA downstream 12296 6702324 ~ 6704443 (-) False G131153
TU193682 lncRNA upstream 28720 6754414 ~ 6755435 (-) True G131165
TU193683 lncRNA upstream 34480 6760174 ~ 6760448 (-) True G131166
TU193728 lncRNA upstream 124675 6850369 ~ 6852128 (-) False srd5a1
XR_006247094.1 lncRNA upstream 158268 6883962 ~ 6885443 (-) True LOC122324041
TU193811 lncRNA upstream 317813 7043507 ~ 7044962 (-) True G131265
XM_043217382.1 mRNA downstream 14539 6696902 ~ 6702200 (-) True c19h6orf47
XM_043217376.1 mRNA downstream 20371 6672539 ~ 6696368 (-) True vars2
XM_043217377.1 mRNA downstream 20373 6672539 ~ 6696366 (-) False vars2
XM_043217378.1 mRNA downstream 24746 6672539 ~ 6691993 (-) False vars2
XM_043217379.1 mRNA downstream 24939 6672539 ~ 6691800 (-) False vars2
XM_043217947.1 mRNA upstream 36381 6762075 ~ 6765872 (-) True LOC122323845
XM_043218252.1 mRNA upstream 44177 6769871 ~ 6821321 (-) False adcy2b
XM_043218253.1 mRNA upstream 44177 6769871 ~ 6821320 (-) False adcy2b
XM_043218251.1 mRNA upstream 44177 6769871 ~ 6821320 (-) True adcy2b
XM_043218290.1 mRNA upstream 109192 6834886 ~ 6849688 (-) False tent4a
XR_006247131.1 other downstream 12802 6703871 ~ 6703937 (-) True LOC122324261
XR_006247130.1 other downstream 13350 6703323 ~ 6703389 (-) True LOC122324260
TU193649 other downstream 67350 6648438 ~ 6649389 (-) True polr1h
TU193577 other downstream 77519 6631189 ~ 6639220 (-) False sh3bp5lb
TU193406 other downstream 353567 6362347 ~ 6363172 (-) True G131006
TU193894 other upstream 630927 7356621 ~ 7360111 (-) True LOC122323893
TU193918 other upstream 669486 7395180 ~ 7397946 (-) True LOC122324169
TU193992 other upstream 876439 7602133 ~ 7605143 (-) True G131373
XR_006247052.1 other upstream 1393255 8118949 ~ 8129270 (-) True khdrbs1b
XR_006247051.1 other upstream 1395818 8121512 ~ 8129258 (-) False khdrbs1b

Expression Profile