RNA id: XM_043217299.1


Basic Information

Item Value
RNA id XM_043217299.1
length 1434
RNA type mRNA
GC content 0.39
exon number 2
gene id LOC122323460
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 4391699 ~ 4393255 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATATGAAGATGTGAAAGGGTGCATGTGCAgtcactttcagttttagtcGACCTTAACAACGCAGACATGAGCAAGGCGTGGGTACAAAACCTGAAACAGGTGATGAAAAGTCATACTGGATCAAATGTAATAACTGGCTTTTTAATGGTGCTGATTGAGAAACTCGTGGAGATGGACTTTGCATGTCCTTGTGATCCAAAGACGAACCTGGCGTTTTCCTTGGCATATTTTTTGGTTCCTGCTCTGTTCTCCAGCACACtcatgttttatattcataGCCCGGAGTGCAAAAGCAAGTGTCTGCTCTCCACTATAACCTGCATCATTCCTGCTGGTACTTGGGTCCTGCTGCTGTTCTTCGACGGACAGTACTTCGCCTGTGCACGGACCTCCTGGGAAGGACTGACGGTCCACACGGATATATCTGCTTCAACAACATGGTGTGAGCCTTTTATGAAGTATGGCAACATCACCGCAAAGCAAAGGGAGTTTTTTGGCTTTCGAAATATTTCGCAGGTAGTGGCACTGTCTCTGCTGCTTGTGATCTCCGGGGTCCTGTTTATAATTGGAGGGATAAGATGCACCCGAGGAAAAAAAGAACCTAAAGCTGAACGAGTGGAAATGGAGGAAGCAGGTCAAAGTTCATCAAGCCCTCCTGAAAGATCTTCGTTGATGGAGGGTGCACAAACACAGAGGCTTTGAACAGAGATTTTGCAAAGCAACCCTTAATGTCGAGAAATCTTATGTTTTAAGGAGGGAAATAATGTCTGTATCTATCTGTTTCCAAAATGTCTTGCTGTCAACCACATCCTGGTTgctgacttctttttttttttttacacttttggcTTGGTACTTTCTTTGAAGTTTGTAGAAAAACACAAGTGCAAAAAACTGCATCCGCTCGCTGTCAGTTGCTGCTTTGCTTTAAGGTATGCGTGGAGGTTATcaagtgaaaataaaagcaatgttGACAGACTTATTTGACCTGCAATTAAGCAAAAAGGTTTCCTCGAAGGATCCTCACTCGCAAAATGCGTGCGTTGTGTTTTAcgtttgattttttaaattcatttttaatcatttattacagAATCGTTTTATAATCATTAGTCATTCACCAGATTTATCATTGGAtcatttttgaattatttgctTGCTTTTATCACTTGATTATTTTGATCATTCATAtcgttatattttttatttagtgtttttattgtttattcatttatcttgtttctatattttatatttcttatcgATTTTTCCTTGCTCATGTATTCTCACTGTTGTTTAATCTCATGCTTGTGGGGTTTCATGAACCGTTGTCTGTATGAATAGATAAAgatgaaatgtttgaatttgtGCTGAACATTGAGACACGCACATCTACGAGATTGTTCGATAAACTCTGTTGCTCTTTGCCATCA

Function

GO:

id name namespace
GO:0042611 MHC protein complex cellular_component
GO:0042613 MHC class II protein complex cellular_component

KEGG:

id description
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko04940 Type I diabetes mellitus

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192529 lncRNA upstream 9052 4380724 ~ 4382647 (+) True G130421
TU192488 lncRNA upstream 123575 4267665 ~ 4268124 (+) True G130383
TU192486 lncRNA upstream 125591 4265824 ~ 4266108 (+) True G130381
TU192396 lncRNA upstream 192442 4176268 ~ 4199257 (+) True G130338
TU192394 lncRNA upstream 231672 4150677 ~ 4160027 (+) True G130336
TU192541 lncRNA downstream 14368 4407623 ~ 4408091 (+) True G130426
TU192561 lncRNA downstream 66660 4459915 ~ 4464590 (+) False znf706
TU192572 lncRNA downstream 104694 4497949 ~ 4498186 (+) True G130449
TU192749 lncRNA downstream 342806 4736061 ~ 4737582 (+) False LOC122323749
TU192750 lncRNA downstream 342806 4736061 ~ 4737582 (+) True LOC122323749
XM_043218108.1 mRNA upstream 89470 4297248 ~ 4302229 (+) True fam210aa
XM_043218200.1 mRNA upstream 181569 4201233 ~ 4210130 (+) True LOC122324024
XM_043217928.1 mRNA upstream 338542 4049910 ~ 4053157 (+) True LOC122323824
XM_043217926.1 mRNA upstream 499734 3863228 ~ 3891965 (+) True LOC122323815
XM_043217925.1 mRNA upstream 529089 3859464 ~ 3862610 (+) True LOC122323814
XM_043217672.1 mRNA downstream 1330 4394585 ~ 4406579 (+) False ptpn2b
XM_043217671.1 mRNA downstream 1330 4394585 ~ 4406579 (+) False ptpn2b
XM_043217822.1 mRNA downstream 24261 4417516 ~ 4430925 (+) False ncaldb
XM_043217823.1 mRNA downstream 25210 4418465 ~ 4430925 (+) True ncaldb
XM_043217824.1 mRNA downstream 30203 4423458 ~ 4430925 (+) False ncaldb
TU192476 other upstream 132614 4244768 ~ 4259085 (+) True G130372
TU192216 other upstream 630714 3759867 ~ 3760985 (+) True G130208
TU192043 other upstream 1297985 3093067 ~ 3093714 (+) True G130077
TU191970 other upstream 1413283 2970687 ~ 2978416 (+) False phactr4a
TU191942 other upstream 1498207 2889689 ~ 2893492 (+) False serinc2
XR_006247039.1 other downstream 1330 4394585 ~ 4406579 (+) True ptpn2b
TU192559 other downstream 66660 4459915 ~ 4464904 (+) True znf706
TU192560 other downstream 66660 4459915 ~ 4464590 (+) False znf706
XR_006247113.1 other downstream 90445 4483700 ~ 4490450 (+) False pabpc1b
XR_006247121.1 other downstream 94726 4487981 ~ 4488115 (+) True LOC122324250

Expression Profile