RNA id: XM_043217319.1


Basic Information

Item Value
RNA id XM_043217319.1
length 3679
RNA type mRNA
GC content 0.40
exon number 4
gene id lin28ab
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 2102744 ~ 2115503 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTTTCCTCTGACATGAGTCAGCAACCTGCGCTCTTGTCGAGAGTGCGTTTGGGAAGCTGATGAACGGCATCCAAGAATCctgcatgaatatttaattggaAAGTGGATGCGGCTTTAATTGTGTTTGCGGGTGACGGGCCGCATGACAATCCAAATACAGTCATCAGAGCAGAACCACAGCAGGAGCCCCGACTGACTCACTGCTCCTCATTCACTCACGCACGCTATAAAATGTCTTCGAGGAAAGGAATAGTTGGACTGACACTTTCGAGTTCTCGCAGGCTGGATAGCGGTCCTCATTAAAGAGGAAACCAACGGTTTTTAAGAAGTCAAGATGCCCCCGACGAATCCGCAACTCGGTCGCGCAGGGGGCTGTGCAAAGACGGAGGAGGAGGAAGCCGCGAGCTCCGAGGAAGACTCGAGCTCGGTTCGTGGAAGTGGGGTGTGTAAATGGTTTAACGTGCGGATGGGCTTTGGCTTTCTGTCCATGACCCATCGGGAGGGCATCTGTCTGGACTCCCCTGTGGATGTGTTCGTTCAtcagAGCAAGCTTCATATGGAGGGCTTCCGCAGTTTGAAGGAAGGAGAAGCTGTGGAGTTCACCTTCAAAAGGTCCTCTAAGGGTCTGGAGTCCTTACGGGTGACGGGGCCAGGAGGGGTGCCATGCGTAGGCAGCGAGAAGAAACCCAAAGGCACCCAAAAACGCCGTTCAAAAGGAGATCGATGCTTCAACTGTGGAGGGCCGAATCATCACGCCAAAGAATGCCAGCTGCCGCCTCAGCCAAAAAAGTGCCATTTTTGCCAAAGCATCACCCACATGGTGGCCAACTGTCCAATCAAAGCACAGCAGTTGTCACCGGGATCTCAGGGAAAATCAACAGCCTCCACCACAGGAGAAGAAGAGGACATGAGCCACACCCCCTTCCCTCCAGACAGCTCTGATTAGTCGTTGTCAGGGAAACCCGAGCCCCAATCAAAAAGTATCAATAGAAAGCTGCTTTTGAAACTAACtcaggtttttctttttcaaacagCAGAAATGAATGTCGCCGCTCACTTTTGTACAttattcagaaatgtaaaacCAGATTAACCTAATATAGAAtgttatacttaaaaaaaaaaaaaaaaaaatcatatccatctttatttttgacagGCATTTTAGTAATATGTCTGTAACACAGCTTTGCGCTCCGCAAATTTGGGATGAACCGGGTATTTCAGATGGATAATCGTGAAATAAAGGGCAGATCTCACAAAAACATGGCAGactcattaatttaaaaattgactaaagtttttattttttttttcaaaattgcttGGCGTCTATATAAATCTTCTActaattttaaagttaaaatatagtGCATAATTGTGTCTTGACGGGTTTTGTGAGGTCTGCCCTGCGTGAAGCAAGTTTGAAAGGCTTTTGTTTTCTGCCTTAGGTAGCAAAGTGTCTTAGATTTGTACCGAAACAATCAAAACCCATCATGTTTACATATTGCAATAAGCCTGGATGTTGGTGATGCTGGTGAAATTATTCACCTGTACACTGGAGAAATCATACTGACTTccgttttcatttttctgaTGCTGTCTGAGACTTCTGATTGTGGTTTACACAGGCcaatgaatgttaaaatgctGTGTTGATGCATATCATACATTACCTCAGCCTCTCTATGTCATCAGTGGAAATATTGTGACTGCACTGTCATTAGCTAGTTGCTGTAAGAAAGGCACGGTGGCTTTCTTGGATTATTTAACGCTGTGTGTTTTGCAAGGCTCGCTCTCATTTAAAGATCTGGTCAATTCTAGGCAAAGTCCAGAAGGAATCCAACTCGTATTTGAGCCAAGACAATAGCACATGTTTTTACgataatctattttttttgtcttttccttgTGCAACATCATATGAGACACTAATGAGGTATCAGGTTTGTTGTTCTAAATGTATTCCAAGAGGAGATCCTGACTAAATTGATCTCGCTTTAttgtaaataacttttaaaccgctgttatttatttgtagccACACAAACTGACCTCAAACTCTGTGATGTTGCGATGGACTCAGTTTGCTCTCAGTCACAACAAGAGCTAGATCCTTTCGGTGATTAGTTAAAGATTGACAGCTGGTGACCAGAATTCACAAGGTTTATACTATGCTGAGAATTATTTTGAtgcactattttatttttaattttttttttttcataatttatggCCTGTTAATGgcctaaaagtttttttacaatttattcccATGACTGCATGAAGTTCAGGTTTGTTCTCGTTTTGAGGGAGAGCAACTGAGCTGTCAGGCTTCACTGTGTTTGAGGAAAGCATCTGGTCTTTGCCAAACGAAAGCACAATGAATCCTGCGTTTAGCCTGTTTGTATATCTGACCCAATCCTCAAACTTTCAGAAACTCAGTGGATAAAAAAAtacctagtttttttttttatatatattttttttttttgcagcaaagcACAACCGGTTTGGTTTCAAGCACAGGTTGAATGTTAGAGTGGTTGGTTAGTAACTTCTAAACTAACGGCACATCACCGCTCCACAAGAgttattttttgctgtttagAGGCTAATTTGTCCCTCAGAATAACGTGAAAAGGTTTTAGTATGTTATTGCATGGAAGTAGGTGTTAGAATAGTAGGCTATAGTGTTGGGTGGATGGGTCTCGCCTTAAACAACCTGTTGAAAACTTGAAGTTTCAGGATGTGAAGGTTTCTTTTCCATTGATAAGATTGTATTCTATCTTAGTTCATACCATTATTGTATATTCCATTatcctttttaatattttgtggtattggttctttttttaatctttatttaaagtaaaaacaagaTGCGTAACTTGTTTTGAATCTATACAAATCTACCTCAGGGTGtgttgaaatgtattaaatggaCATTGTTACCAGAGTGCTGtccatttaaatgtgtgtgtgagagagaaataagtgagtgtgtgctttagtttatttttctaggtttattaatgtatttaatacggTATGTGTGATCGTTTGCAATGTATCTGCACTGTTTAAACTCAGCTTTGgtcaaatgtgtgtaaaattgtGGTTTAAATTTAGACCAGCTCTCAGGAGAAGTGCAAATGTTATATTGCTCCAGTAcgtgttttaattattgttttttttttttaactgtaatgtTCTCTGAGATTAACTCGGGAGTATGGTCATAATTTCTTGTTTGGTTTTGATTAATGAAGAGGATAATCAATGTTGGTgactttaattttgtaatttagaattattctctttttttttttttgttgctctcTGATGCTCGGGGCTCCAGACGCTGCACAAATATGGAGCCCTGCTTATGTTCAGTTAGTGTCTTTCAGTCATTTTGTATTGTCGTTCAGGTGTGGTCAGGACTGTTTGTTCCACTTGTGTTTGATTGAGGCAAATACGTTTAGTGTTCCCGTGACCAAAGAATGTAGCCACATTGAATTAGGCAAACAGATAGCGTGCAGTTTATGAAGTTTCTTCTGCTGTGATCCATGTTGAGTGGTTTCAGAGAAAACGCTTTGAGGATCAGTTCATCTTGACAAAGCATGCAAAGAATGATGTgcccaaaatgtgttttagtgttaACATTGACAACTGCTT

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0019827 stem cell population maintenance biological_process
GO:0031054 pre-miRNA processing biological_process
GO:0031099 regeneration biological_process
GO:0031123 RNA 3'-end processing biological_process
GO:0010587 miRNA catabolic process biological_process
GO:0000932 P-body cellular_component
GO:0005634 nucleus cellular_component
GO:0010494 cytoplasmic stress granule cellular_component
GO:0003677 DNA binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K18754 LIN28; protein lin-28

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191780 lncRNA upstream 20124 2082278 ~ 2082620 (+) True G129886
TU191775 lncRNA upstream 45862 2056405 ~ 2056882 (+) True G129881
XR_006247045.1 lncRNA upstream 130952 1966740 ~ 1971792 (+) True LOC122323678
TU191728 lncRNA upstream 137056 1870158 ~ 1965688 (+) False thrb
TU191670 lncRNA upstream 398212 1700588 ~ 1704532 (+) True G129795
TU191792 lncRNA downstream 24389 2139892 ~ 2141305 (+) False ppp1r8a
TU191825 lncRNA downstream 149714 2265217 ~ 2265435 (+) True G129916
TU191849 lncRNA downstream 227532 2343035 ~ 2343239 (+) True G129936
TU191855 lncRNA downstream 235795 2351298 ~ 2351565 (+) True G129942
TU191860 lncRNA downstream 263580 2379083 ~ 2379355 (+) True G129947
XM_043218516.1 mRNA upstream 70559 2026415 ~ 2032185 (+) True sf3a3
XM_043217492.1 mRNA upstream 111835 1987321 ~ 1990909 (+) True nkiras1
XM_043217846.1 mRNA downstream 4465 2119968 ~ 2130526 (+) False pdik1l
XM_043217847.1 mRNA downstream 4759 2120262 ~ 2130526 (+) True pdik1l
XM_043217844.1 mRNA downstream 19149 2134652 ~ 2141332 (+) True ppp1r8a
XM_043217845.1 mRNA downstream 19149 2134652 ~ 2141332 (+) False ppp1r8a
XM_043216947.1 mRNA downstream 38332 2153835 ~ 2181727 (+) True foxo6b
TU191722 other upstream 129360 1970692 ~ 1973384 (+) False LOC122323678
XR_006247023.1 other upstream 430403 1657298 ~ 1672341 (+) False LOC122323556
TU191508 other upstream 996171 1072151 ~ 1106573 (+) True G129682
XR_006247126.1 other downstream 214638 2330141 ~ 2330276 (+) True LOC122324256
TU191918 other downstream 670422 2785925 ~ 2786348 (+) True G129993
TU191942 other downstream 774186 2889689 ~ 2893492 (+) False serinc2
TU191970 other downstream 855184 2970687 ~ 2978416 (+) False phactr4a
TU192043 other downstream 977564 3093067 ~ 3093714 (+) True G130077

Expression Profile