RNA id: XM_043217323.1


Basic Information

Item Value
RNA id XM_043217323.1
length 4094
RNA type mRNA
GC content 0.45
exon number 18
gene id eya3
representative False

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 5484922 ~ 5500596 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AACTTCCTGCCAAATAGTTGTCCCTAACAACACACAGCACCTCACCGAGGGAATTTCAGGTTAAGGAAACATAAAGTTTCCTCGGAAGTAGCACTTGGTGACATGGGCCTTGGCCAAAGCAGAAGCAGCAGAGACTGACGGCTCAGATTTAGCGGGGCGGACGCTGAAGACGCCCTCTCCCACAGCCATGGACGAGTCACAAGAGGTGCCCGAGCTACCTACAAAGAAAGCCCGGCATGATCCAGAATTGAGACAGGAGGGTGATTCAAGAAGTGTGGGGGCTAGTGACAGCATTGACTCCCCTAACCGGAACGAATCGACAGCTCAGTCAGAGGTCAATTCATATCCACCATCATCTGTCGCTCACTTGCACACCATGCCTGGAGGTCCAGACCGGTCAAATCAAGACACGATATCGAGATCCCAGGGCTGTGTCTCAGAAAACGCATATGATCACAATGCAGTGACGTGCAAAGACCTCACCACAACCACAGCCACGGAATATACCTCACAGATCTACCAAGGAAGCAACACCGCAGTCACTGCATATGCCAGTCAAGTGGCTTTCCCCTCCCTGGGCCAGTCGACCGTATACAGCGGCTTTCCTCAGTCCGGCCAGACGTACGGACTGCCACCATTTGGTTCCTGTTTCACTACGTCCAGTGTGTACACTAACATCCCTCCAGCAACTGCTGTGACCACAACTACTGGCACACATCAGGAGTTTTCAAGTTACAACTCTCTTGGTCAGAGTCAGTTCTCGCAGTACTACGTTCCTCCTCCCAGTTACCTGCCTGCTGGGCTGCCCAGCAGTGATAGAGATGGAGCAGGTGTGGTGGCCCCTGAATATCCAGCCATTAAAACTGAAGGCAGCGCCTCAGCAAACCTGCCCAACACAACAGATGCATCCCCAGGTGTGACGATCCCAACAGGTGTAGCTCTGCCTGCTGGGATGGCCCTCCCCACAGGAGCACGGGACCAAGAAGAGGCCAATCGCAAAAACCCTCCTGGTAAAGCTAAAGGCAAAGCTAAGAAATCTGATGGTTCCCAGTCCACAGACAATGACCTGGAGcgCATCTTCTTGTGGGATCTGGATGAAACCATCATCATTTTCCACTCTCTTCTTACTGGCTCATTTGCACAGAAGTTTGGCAAGgatccAGCGACGGTTCTCAATCTGGGGCTTCAGATGGAGGAGTTGATCTTTGAGCTTGCAGACACTCATCTCTTCTTCAACGACCTAGAGGAATGTGATCAGGTCCATGCTGATGATGTTGCCTCAGATGACAATGGGCAGGACTTGAGCAACTACAGCTTCTCCAGCGATGGCTTCAGCGGACCCAGTGCAGGCGGCGGTTCAGGGACCACCACCGCGGTGCAGGGAGGAGTGGAGTGGATGCGTAAACTGGCCTTCAGATATCGCCGGCTCAAAGAGATCTACAATGGATTTAAAGGGAATGTAGGAGGTCTGTTGAGCCCAATGAAGAGAGACCTCCTGCTCAGGCTGCGCTCTGAGATCGAGACCGTTACAGATGCTTGGCTGAGCACTGCTCTTAAATCTCTCTTGCTCATTCAGTCAAGGGGCAGATGTATGAATGTTCTGGTCACCACCACTCAGCTGGTTCCTGCTTTAGCTAAAGTGCTTCTCTATGGCCTGGGTGACGTCTTTCCCATTGAGAACATCTACAGCGCCACTAAAATAGGAAAAGAGAGCTGCTTTGAGCGCATCATCTCTCGCTTTGGGAAGAAAGTGACGTATGTCGTTATAGGGGACGGTCGTGATGAAGAGTTTGCAGCAAAGCAGCACAACATGCCATTTTGGCGAATCGCTTCTCACGGAGACCTGATTTCCCTTCACCAAGCTCTGGAACTGGACTTCTTATAGATGGAGCTAAAGGTAAGACATGGATCTCTCCGGCTGTACCCATCCACCCCTAACCCAACGCAGCCGTGGAGCAGCTGACGTAGACTCTGGGACGTTAGCGGTCATAGACAAGAACTCAAGACAGTCCGTGACACGACCTCACAAGCCCTCCATTCCCTCAATGGCAGCTATCCTCCCCTTAGGTTGAATCTTGCACTGGGACGCCACGCAACCATACACaaggaaaagaggaaaaaactgtCTCCCGTTCTCACTGCATCTCTCTCTTGGAAAAAGGATGTACTTTACCATCTTTAACACAACTGGATTCACCAAAGGAGCAACCCATGACCAAAGGTCTGCACTGGCACAGAAACTTAAAGTTTTTCTGCATTCGTTTTAAAGGGCTGAAAAGTCAGAGTCATTTTGATTTGCACTCATTCCAAAGGTCAGGATATTGGTTCTTATGAGATGGCAGGTTACATGCTTTAGAAGCCTCCAAGAAATGATGCGATAATTTCAGTTCTTAAAACAGATGGTACCACCAACGTTTAGCATAGATCCCGCTTCGTTTATTACTGTATCTACATATGGTTTTTCCTAAACGTTCCTCAGTTCCTGGGATCTACTTTTGTTTACCCTTCATGCACactttatttctgctttaaattaGGTGATATGACAAATTAGAGTGCCTAATAGAAAccatttgtttttgtacagtttaTCCCTCTTTTTCTTTGAAAGAATAAATCACCAGAAAATaagaattcactttttttttgttacttttggtCCAAAGCCCAATTAACTTTCATGAACCACAAAAAGAGATTAGAGGAATGTCACACAATACAGTGAAATTTGATTGGAAAAGGGCACTTTCCACCATGGGAGCCATAAGTACGCACCTAAATTTCTTCCCCTTTGTTTAGTGTCAGCAGGCATTAGGTGCGACGTGTCTCGGCATGCTGAATTTGAAGAAAGAGAACTGTTGGATCCCAGTAACTTGGCTCTGCTCATGTTTTACTATATGGAAAGGAGCAGCATTTTTGTGTTAAGAAATTTGGAGTTTTGaatcaaaaaaacaatgacacagTTTTTTGATTtgagctatttctttaaaaatccatatttaGATGAAACACAGGCTCCATGATTGATACCTGATGTTAAATGTCTAATGCAATTATGAGCCACATGAACTAACTGCATTTTCGTCCCCTGAGGAAAGTCACATGGCTGAATGgaattttataaaattaccTCTCGCATATAGCCAAAATTCCCCATGGATTTAAAGCTACAGGGTCCCAGCCTGTGATCGTTTTCTTTCGTTTTGTACATGTTTGGGAGAAAAACCGTGTGATAGTGTGCAATACATTTCTGGTCAGTGATAATTGATTGTTTCAATTTTGGTTGAAGGTGGTTTTTACGAGCAGGTTTGGGTGTAATATTCCTAACCGCTGCGAGATTTTGACTGAACATTACTGAGCctgaagaaaaagcatttttattcaagCAGCTTTGACAATTAAGAATGTGTAATCTTCATTTGTTTGCatagatgtgtgtgtctgttttgttttgttttttcctcctgtatatatttatattgtgccTTTTTAACTATAATCAACATTCAGTAAGTGTATTATCTTAAAGGGAATTACTGAAATATGACAAACATATGCAATATGACAAACAtatgtttgtattgtttgttttttctggtGAAGTGTTACCTTGGACTCTTAGGCCTATGCTGTTGTCGTTTTCTTTTAGTTTGGTACCTTTGATGTGCTCTGAATTCATTTCTGCAGAAACCGTTTTCTCCAtagctcagccaatcagatgctGTTGTTCTTTAACTTGAATCATAAAAACTGCTCTTCTGGTGCTTTTTTTCTATGTACGACTTTGTTTCCTGcatttttcaggaaaaaaaaagatttagtcCCTGTATACTGTCTATTATCTACATTAACTGAAGATACGTGACGCTATCATTGTGAGATCTTGGGATTTGTTACTAATGCATAGACAATCACAGGATGTAACGGTTCTTTTAGCCAGAGAGAAATGCTCAGTCTAGCCCTGGAATTAAGCTTGAGCTTTTAGATCAGTAGGAGAACTTCTGGCTTATTGAAACTGGCTGAAGAAACAAATATCTGTACCTACACTGTTTATGGTTTGTGTACGTGACGTTCATTAAATACTTTGAGGCTGG

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192888 lncRNA upstream 79374 5404453 ~ 5405566 (+) True G130664
TU192908 lncRNA upstream 98823 5382816 ~ 5386117 (+) True G130676
TU192909 lncRNA upstream 99392 5385136 ~ 5385548 (+) True G130677
TU192890 lncRNA upstream 127846 5356870 ~ 5357094 (+) True G130665
TU192873 lncRNA upstream 257327 5226723 ~ 5227613 (+) False LOC122324077
TU193148 lncRNA downstream 2670 5503266 ~ 5505414 (+) True G130813
TU193185 lncRNA downstream 47911 5548507 ~ 5548799 (+) True G130833
TU193190 lncRNA downstream 64784 5565380 ~ 5587515 (+) True G130835
TU193218 lncRNA downstream 110392 5610988 ~ 5612338 (+) True LOC122324017
XR_006247088.1 lncRNA downstream 110516 5611112 ~ 5611964 (+) False LOC122324017
XM_043218181.1 mRNA upstream 1272 5471782 ~ 5483668 (+) True si:ch211-195b13.1
XM_043218180.1 mRNA upstream 1272 5477886 ~ 5483668 (+) False si:ch211-195b13.1
XM_043217024.1 mRNA upstream 60152 5407053 ~ 5424788 (+) True LOC122323295
XM_043217025.1 mRNA upstream 63433 5407049 ~ 5421507 (+) False LOC122323295
XM_043218491.1 mRNA downstream 31364 5531960 ~ 5532887 (+) True LOC122324215
XM_043217936.1 mRNA downstream 69134 5569730 ~ 5571271 (+) True LOC122323836
XM_043218363.1 mRNA downstream 82909 5583505 ~ 5585655 (+) True LOC122324139
XM_043216990.1 mRNA downstream 112472 5613068 ~ 5614130 (+) True LOC122323266
XM_043218065.1 mRNA downstream 216100 5716696 ~ 5717681 (+) True rpa3
TU192862 other upstream 170762 5223700 ~ 5314178 (+) True G130640
TU192863 other upstream 170762 5223700 ~ 5314178 (+) False G130640
TU192837 other upstream 305263 5176275 ~ 5179677 (+) True LOC122323259
TU192857 other upstream 321541 5162586 ~ 5163399 (+) True G130637
TU192810 other upstream 501696 4977885 ~ 4983244 (+) True G130613
XR_006247105.1 other downstream 82909 5583505 ~ 5585655 (+) False LOC122324139
XR_006246984.1 other downstream 245205 5745801 ~ 5752782 (+) True LOC122323254
TU193273 other downstream 284534 5785130 ~ 5922973 (+) False LOC122323983
TU193467 other downstream 962487 6463083 ~ 6488760 (+) True G131047
TU193457 other downstream 1019324 6519920 ~ 6526080 (+) True G131042

Expression Profile