RNA id: XM_043217325.1


Basic Information

Item Value
RNA id XM_043217325.1
length 3092
RNA type mRNA
GC content 0.39
exon number 3
gene id LOC122323472
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 5506052 ~ 5510656 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aatgaaaaaacacaaaattccTTACATTCAAATTCCTGTAACTTTACCAGTAACCATTTTGACAGGTTTTTACCGTAGTATTTTTATAAGAcagttgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggattcacagtgtttatctttaaaatacaagAGCTGCATTGCTTTTGTTCATATCAAATAGGATCAAGAGTCATTTAAGAATCTGTTGGGATGACAATAAATTGAAAACCTTCCTACAATATTTGATTCATAAATgtgtagttcacccaaaaattattattctgttCTTTACTCGTATATCTTTTCAGACCTTTATTACTGACTTTcttcagtttcaaataaatgaagatattttgagaaatgtctcaGAAAACCAGCTTCTCTGTTTCACAGAGGAAAGAAAGTCGCacaaggtaaataaataataacgcACGTTTAATTTCTGGAtgaattattactttaaagCATTGGTCTCAAAGTCCTGGAGGGACACAGTTTTTCTTCAACCCtaaccaaacacacctgatccagctaaccGAGCTCTTCGGGATCACCAGAAACCTCCAAGCAGGTGTGATTAGGAGCTGGCTGGAGATGAACTCTGCTGAGCTGTGctcctccaggaactgagtttaaGACCAGTGCTTTTAGGGGTTTAAGTTTGATTCCATTAGGATTGATTTTCTTAATAGTTAATATATTGATAGATGGCATAGACTACACTAAAACTCAATTACTTGCCTCATCTGTAAATGCCTGCAGACAAGATTCAATCTAATTGTATGTTAATCAGCTTATGAAGTTcgcttatttgtctttcatgtGAGCGGTGTCTCTTATGAAATtcttgtaatttaatttttcattcgGGTTGAACTGAACGACACAGCGAATGAAGTGCTTTGCACActtcctatttatttttcattaaaatttctCATTTATTGCCAGGACAAATGTTTGAGGTATCTTTATTACCCGATAGTCAGTATTTCCTACTGTAAGTTCCTGTATGTAATTTTTGTGGCTGTAGTTTCATTTTGATGTAATGTGAATAGAAATGTCTTGCATCACGAGTTGAGACGCATTTTAAAGAGCCAACCCATATCTAATGCTTATAGAATGCTAATGCGTCATGGGTTATGATATTACATCAGTTCTGTTCAGGAATTTTTTTCTGACAGGTCTCCTGCAATACTTCCTGTTACTTGACAGCTGACTAAGCTCATCTGATAGGAAGCACAGCTGGGGGTGTTTTTTTCCAGCTACTATATaacttctgttatttttttagttctCTATTGCATAACAGCATTTAGTGCCTTTTTATGTAGTTCTAGGCAACCATCAGTACCTTACTACTATTTTTCATACAATAAGTTATGAATTTTAAcaagtctctctctcactctaatataatatatatctaatatCTCAGCAACCCTGAGAATCACTCACAGTCCTGGACTTTACATTAAGCTCTGTGAGTGAACATTGGACACTTCCCACTGTAAACCAATCCGTGTGATTTTGGTCACATGTGATATCCCTCACTACAGTTTGACACATGATAGATCATTCAAAGAAGTGACATGGGAGGGGTTTATGAGAGgtagtttattttctgtttcagacttttaaaactatatatatctctctctgtgtaGAATATTACATGCTGTAAGGTTTCTCACACTGGACTGAATCATGGTGAAGAATCAGGAGAGCTTTCCTTTTggttttttattgaaataccTGTTTACTTTATTGGGACTGTCATTGTTCCTGTTGGATATAGCACTGGACATTTGGACTGTTGTGTCTTTTTATCAGGACGGGGCATATGTGTACATGGCAGTGATGATCTTTCTGCTGCTGGGTTCTTCAGTGTTGTTACAGGTCTTCAGCTGGCTCTGGTACTCTGATTCTCTGGATAGGATCGAGACTAACGTGGAGAAGTTTGCAAACCAGCATTCATTGATCAAACCAATACACTTCCTGCAGCTCGGAGTCTACCTCAGGTATGCCGGTGTGATAGAGACTTCCACAATGGATTTTCTTTATCGCGTTAACAATTTCAGAAATGATGTGCAGCGTGACATCAGAGATGATGTGAAGCTGAAACATGATCTTCTGATGCTTCGTCTATTTGAGGCGTTTTCTGAAAGCGCCCCACAACTCACACTCATGATGTCTATAATCCTACAGAGAGGAGAGCTGGAGCTTATTACAGGGTTAAAAATTCTCACGGCAGCTGCTGCAATTGCCAGTAATGTTGCCTTGTACCACCGGGGCATGCATGTCTACGGTTCTAAAGGACGCAAGATGAGCCTGATCCCCACTCTGATTTACTTCCTGTGGAACTTGTTGGTGATTATTCCTCGTGTATCTGCTCTGGCGCTCTTCTGCAGTGTGTTGCCATGCTACATCACAGCTCACTTCCTGTCTTTGTGGATGCTTCTGGTTTTAGTGGCTTGGGGCCAGAAAACAGACCACATGAAAAGTTCTGGTTGGGAATGGCTCTTCAGAGCTGCTGTTGGACTCATCTGGTACTTCTGCTGGTTTAACGTGtccaaaaaaagcatcaaagtAAAGATGGCTGTCTATTATAGTTTGATGGCTTTGGACACAGTGATGCTGCTGGGCTTCTGGTGCTGGAAGGTGTTTGAGTATGCAGGATGCTCCTTGAATCCTTACGTGGTGATCCCGACACTACTAGGTTTATATGTCAGTGGAATACTAGTGAAAATTATATACTACAAATGGTTTCATCCTAAAATGGATGAACCCAATGAAGGGTCGAATAGACAAGCTGCAACATATGATGCCGACTCAACAGACTCAACAGACTTGTCCCCAGAAGATACATCTACAGCTCCTGTCCAGACTCTCACTGGAGTCCTCAAAAGAAGCAGGACCATGGTTGCTAATTTCTACTTCTAATATTTTCGCCCTCCCCTTTGAACTTTCCCCCTCCCCTTTCaaagtttgtatttataatgtatttaaacagtaaaccacactgtaaaaacaattatgtgGTTTTTACGAAAACAttttggca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193134 lncRNA downstream 65187 5440426 ~ 5440865 (-) True G130804
TU193130 lncRNA downstream 72123 5433562 ~ 5433929 (-) True G130801
TU193116 lncRNA downstream 100416 5404516 ~ 5405636 (-) True LOC122324254
TU193085 lncRNA downstream 152790 5345595 ~ 5353262 (-) True G130764
TU193089 lncRNA downstream 231131 5271840 ~ 5274921 (-) True G130768
TU193178 lncRNA upstream 10283 5520939 ~ 5522620 (-) False G130827
TU193179 lncRNA upstream 10283 5520939 ~ 5522966 (-) True G130827
TU193252 lncRNA upstream 163898 5674554 ~ 5674878 (-) True G130880
TU193297 lncRNA upstream 235192 5745848 ~ 5876713 (-) True G130914
TU193304 lncRNA upstream 241929 5752585 ~ 5883367 (-) True G130920
XM_043217326.1 mRNA downstream 1647 5501265 ~ 5504405 (-) True LOC122323473
XM_043218366.1 mRNA downstream 102921 5398274 ~ 5403131 (-) True si:dkey-154b15.1
XM_043217943.1 mRNA downstream 108489 5367217 ~ 5397563 (-) False myo1g
XM_043217944.1 mRNA downstream 108489 5368564 ~ 5397563 (-) True myo1g
XM_043217942.1 mRNA downstream 108495 5360053 ~ 5397557 (-) False myo1g
XM_043217324.1 mRNA upstream 4371 5515027 ~ 5519834 (-) True LOC122323471
XM_043217058.1 mRNA upstream 12424 5523080 ~ 5527170 (-) True xkr8.3
XM_043217785.1 mRNA upstream 75881 5586537 ~ 5609859 (-) False ptp4a3a
XM_043217784.1 mRNA upstream 75881 5586537 ~ 5597028 (-) True ptp4a3a
XM_043218143.1 mRNA upstream 103612 5614268 ~ 5670371 (-) True rims3
XR_006247124.1 other downstream 100834 5405086 ~ 5405218 (-) False LOC122324254
XR_006247125.1 other downstream 101152 5404769 ~ 5404900 (-) True LOC122324255
TU193049 other downstream 245888 5141505 ~ 5260164 (-) False G130744
TU193082 other downstream 253863 5245353 ~ 5252189 (-) True G130763
TU193048 other downstream 348050 5141505 ~ 5158002 (-) True G130744
TU193406 other upstream 851691 6362347 ~ 6363172 (-) True G131006
TU193577 other upstream 1120533 6631189 ~ 6639220 (-) False sh3bp5lb
TU193649 other upstream 1137782 6648438 ~ 6649389 (-) True polr1h
XR_006247130.1 other upstream 1192667 6703323 ~ 6703389 (-) True LOC122324260
XR_006247131.1 other upstream 1193215 6703871 ~ 6703937 (-) True LOC122324261

Expression Profile