RNA id: XM_043217363.1


Basic Information

Item Value
RNA id XM_043217363.1
length 1877
RNA type mRNA
GC content 0.41
exon number 2
gene id LOC122323497
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 5063165 ~ 5065170 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGGGCAGATGAAGATTTATCTTCTTGTATTCTGGGCAATGCCTGTCCTGACCATTGCTGAAAAGGATGACATAGGCTCATTAAAAGAGTGTGAGGATGCTCCCTTCATTCCAGGACACAATCTCGCTGGAGAGGGATTTGATGTTGTGACCATGCAGCGTAAAGGTTCTTATGTGATCAACATGGAAAAATGGGATGTAGGAAAGGGCACTTGTAAATTGCAAAGCAACAAGTACATGGGTGGAATAAAACAGAAGCTACCAGCAGCAGTTGTGTTCTGGAGGACCTTGCCAAAGTGTTCAATGAAAGTCTCCAGTCAGATCTTTGAATCAAGTGAAGCTCTGGTCAATGATTCATCATCAGCACTGGATGCCAGCTGGAAAGTTGGTTTAGATATGAAGACATATGGGGCTGCTGTTGGAAGCACTCATTCCAGGGAAGCAAAATTTGCAATGACTAAAtctaaaaaagacaaatacagtTTCACCAAACATGAAGTTTCATGCCGTTTTTACAGATATCGTGTCGCTCAAAAACCTCCTCTTCATGCAGAGTTTCTTGAAGCAATCAAATCACTTCCTGCATCCTACGACCCAGACGCCTACCGCAACCTGATCAGCACATATGGCACTCACTATACCACAGGTGTCAACTTAGGAGGGAAAATGAAAGCCATAACAGCCATCAAAAGCTGTCAGGCAGCAGTGAGTGGACTTACAGACACTGCAGTGAAGGACTGTTTGGATGTAGAAGCCTCTCGTTCATACAGTGCAGCAACTGTGAGGGCAAAGTCACATTTTTGTCAAAACCAAAAAAGGAAGATGCATACAAATGAAAAGTTCAGCTCCATGTTCAGTGAGCGTCAGACAGAGATTATCGGAGGAGACATAAATGGAGAAGATCTGCTTTTTTCTGGTTCATCACACGCACATTCCCTTAAAAAATGGGTCGAATCTTTGAAGAGTCTCCCTGACATTGTGCATTACTCTCTGAAACCTCTTCACTTCTTACTGAGTGCTAAACACCCTGCAAGAAAAGGACTGAAGAAAGCTGTTGAAGAATACATCGTTCAAAATGCCCTTATGAAGGTTTGCTCTGAGCCTTGCAAGATTGGCAGGAAGTGCAGTGCAAGAGACAGATGTACTTGTGTTTGTCAAAGTAGTCCAATTATAAAGTCTAACTGCTGTCCACCTGAAAAAGGACTTGCCACCCTGAAAGTCTACAATCTCAGAGCCAAAGGTCTGCACGGAgatacatttacacaaacagaTGGCAATGTAAATGTTGTGTATGAAAGAAAAACTAGGCACACTAAAACCATTGATAATAATGACAATCCACGCTGGCCAGAAACATTTGACTTTGGTCCTATTAAAATCAGAATGGCTAATAAACTCAGTTTTAAAGTATATGATGCAGACAGCGCCTGGAACAGTGATCTTCTTGGTGAATGCTCTTTTGATCTTAAAAGTGGAGTTGTGACTGatgcttgtgtttttaaatatggcacctttttttttacctacgAAGTGAAATGTGCTCCCAGTCTGCAGGGCCCTCGGTGTGATCAACACAAATCTTCTCCGATGGCTGCCAGTCTGGCTGATATTTTCAGCTCAAGAAATGGTGTTCTGGTTAAAGATCTGCTGAGGCTTGAATTGGCTCGTAATAACTCTGATGAATTCAATTTCAAGAGTAATTTTGAAAAGTTGATGATGCTTTGATCTGAATATTAAATCCCTTCTGAATGCATTAAGCCTAACTGCACTTTCATCTGCTTCAAAAAAAGTATATCTCGAGGGGTGAGAACCAGAAGAGTGTAAGTcacattttgggtgaaatggagatatatatatatatatacacactttttgCT

Function

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0005579 membrane attack complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192966 lncRNA downstream 49475 4873734 ~ 5013690 (-) True G130710
TU192967 lncRNA downstream 49475 4873734 ~ 5013690 (-) False G130710
TU192968 lncRNA downstream 49475 4873734 ~ 5013690 (-) False G130710
TU192969 lncRNA downstream 49475 4876772 ~ 5013690 (-) False G130710
TU192996 lncRNA downstream 73402 4850592 ~ 4989763 (-) True G130717
TU193040 lncRNA upstream 29242 5094412 ~ 5219970 (-) False LOC122323502
TU193038 lncRNA upstream 35651 5100821 ~ 5219970 (-) False LOC122323502
XR_006246985.1 lncRNA upstream 78095 5143265 ~ 5158004 (-) True LOC122323269
TU193042 lncRNA upstream 111300 5176470 ~ 5222159 (-) True G130738
TU193055 lncRNA upstream 125266 5190436 ~ 5192653 (-) True G130750
XM_043217362.1 mRNA downstream 2808 5052326 ~ 5060357 (-) False LOC122323496
XM_043217361.1 mRNA downstream 2808 5056060 ~ 5060357 (-) True LOC122323496
XM_043217749.1 mRNA downstream 235250 4821737 ~ 4827915 (-) True LOC122323699
XM_043217748.1 mRNA downstream 235251 4821737 ~ 4827914 (-) False LOC122323699
XM_043217137.1 mRNA downstream 243138 4809114 ~ 4820027 (-) False LOC122323359
XM_043217364.1 mRNA upstream 11544 5076714 ~ 5078874 (-) True LOC122323498
XM_043217365.1 mRNA upstream 18723 5083893 ~ 5089261 (-) True LOC122323501
XM_043217366.1 mRNA upstream 35699 5100869 ~ 5104342 (-) False LOC122323502
XM_043217933.1 mRNA upstream 73260 5138430 ~ 5143254 (-) True LOC122323831
XM_043218450.1 mRNA upstream 102472 5167642 ~ 5169027 (-) True LOC122324190
TU192945 other downstream 121333 4808097 ~ 4941832 (-) True G130696
TU192049 other downstream 1913376 3149154 ~ 3149789 (-) True G130083
TU191990 other downstream 2151562 2908489 ~ 2911603 (-) True G130041
TU191925 other downstream 2230209 2825344 ~ 2832956 (-) True G130000
TU191907 other downstream 2311595 2740004 ~ 2751570 (-) True LOC122323398
TU193036 other upstream 22074 5087244 ~ 5104353 (-) False LOC122323502
TU193037 other upstream 22074 5087244 ~ 5222883 (-) True LOC122323502
TU193035 other upstream 35651 5100821 ~ 5104353 (-) False LOC122323502
TU193048 other upstream 76335 5141505 ~ 5158002 (-) True G130744
TU193049 other upstream 76335 5141505 ~ 5260164 (-) False G130744

Expression Profile