RNA id: XM_043217364.1


Basic Information

Item Value
RNA id XM_043217364.1
length 1861
RNA type mRNA
GC content 0.41
exon number 3
gene id LOC122323498
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 5076714 ~ 5078874 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAAGACAGATTATGGGGCAGTTCCAGAATTACCCTGTTGTTTTCTTGGCATTGCTTTTCGTGATCATTTATGGACAGGAGGAAATAGGTGTATCAAAAGAGTGTGAGGATGCTCCCTTCGTTCCAGGATATAATCTCGCTGGAGAGGGATTTGATGTTGTGACCATGGAGCGTAAAGGTTCTTACGTGATCAACACGGAAAAATGGGATGTAGGAAACGGCACTTGTAAATTGCGCAGCAACAAGTACATGGGTGGAATAAAACAGAAGCTACCAGCAGCAGTTGTGTTCTGGAGGACCTTGCCAAAGTGTTCAATGAAAGTCTCCAGTCAGATCTTTGAATCAAGTGAAGCTCTGGTCAATGATTCATCATCAGCACTGGATGTCAGCTGGAAAGTTGGTTTAGATGTTAAGGCCGTTGGAGCTGCTGTTGGAAGCACTCATTCCAGGGAAGCAAAATTTGCAATGACTAAATCTAAAGAAGACAAATACAGTTTCACCAAACATGAAGTTGGGTGCGATTTTTACAGATATCGCGTAGCTACAAAACCTCCTCTTCATGATGAGTTTCTTGAAGCTATCAAATCACTTCCTTCATCCTACGACCCAGACGCCTACCGCAACCTGATCAGCACATATGGCACTCACTATACCACAGGTGTCAACTTAGGAGGGAAAATGAAAGCCATAACAGCCATCAAAAGCTGTCAGGCAGCAGTGAGTGGACTTACAGACACTGCAGTGAAGGACTGTTTGGATGTAGAAGCCTCTGGTTCATACAGTGCAGCAACTGTTAAGGCAGAGGcacatttttgtaaagaaaagaaaaagaagatggGCACAAATGAAAAGTTCAGCTCCATGTTCAGTGAACGTCAGACAGAGATTATCGGAGGAAACATAAATGGAGAAGATCTGCTTTTTTCTGGTTCATCACACGCAGATTCCCTTAAAAAATGGATTGAATCTTTGAAGAGTCTCCCTGACATTGTGCATTACTCTCTGAAACCTCTTCACTTCTTACTGAGTGCTAAACACCCTGCAAGAAAAGGACTGAAGAAAGCTGTTAAAGAATACATCGTTCAAAATGCCCTTATGAAGGTTTGCTCTGAGCCTTGCAAGATTGGCAGGAAGTGCAGTGCAAGAGACAGATGTACTTGTGTTTGTCAAAGTAGTCCAATTATAAAGTCTAACTGCTGTCCACCTGAAAAAGGACTTGCCACCCTGAAAGTCTACAATCTCAGAGCCAAAGGTCTGTACGGAGATAAATATACAGAAACAGATGGCACAGTTACTGTTACATATGACAACCAATACAAGCGCACTGAGACCATTGATAATAAAGACAATCCACGCTGGCCAGAAACATTTGACTTTGGTCCTATTAAAATCAGAATGGCTAATAAACTCAGTTTTAAAGTATATGATGCAGACAGCGCCTGGAACAGTGATCTTCTTGGTGAATGCTCTTTTGATCTTAAAAGTGGAGTTGTGACTGatgcttgtgtttttaaatatggcacctttttttttacctacgAAGTGAAATGTGCTCCCAGTCTGCAGGGCCCTCGGTGTGATCAACACAAATCTTCTCCGATGGCTGCCAGTCTGGCTGATATTTTCAGCTCAAGAAATGGTGTTCTGGTTAAAGATCTGCCGAGGCTTGAATTGGCTCGTAATAACTCTGATGAGTTCAACTTAAAGAGTCTTGGAAAGCTGATAATGCTGTGATCTGCATCTCAAATACCTCTATTTGCCTTAACAGCAATTTTATCGACTATAAAAATATCTGTAACCTTTTCGTATTTCCTttgccattatttttttatgttgcttttttgcattaataaagcATTCTT

Function

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0005579 membrane attack complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192966 lncRNA downstream 63024 4873734 ~ 5013690 (-) True G130710
TU192967 lncRNA downstream 63024 4873734 ~ 5013690 (-) False G130710
TU192968 lncRNA downstream 63024 4873734 ~ 5013690 (-) False G130710
TU192969 lncRNA downstream 63024 4876772 ~ 5013690 (-) False G130710
TU192996 lncRNA downstream 86951 4850592 ~ 4989763 (-) True G130717
TU193040 lncRNA upstream 15538 5094412 ~ 5219970 (-) False LOC122323502
TU193038 lncRNA upstream 21947 5100821 ~ 5219970 (-) False LOC122323502
XR_006246985.1 lncRNA upstream 64391 5143265 ~ 5158004 (-) True LOC122323269
TU193042 lncRNA upstream 97596 5176470 ~ 5222159 (-) True G130738
TU193055 lncRNA upstream 111562 5190436 ~ 5192653 (-) True G130750
XM_043217363.1 mRNA downstream 11544 5063165 ~ 5065170 (-) True LOC122323497
XM_043217362.1 mRNA downstream 16357 5052326 ~ 5060357 (-) False LOC122323496
XM_043217361.1 mRNA downstream 16357 5056060 ~ 5060357 (-) True LOC122323496
XM_043217749.1 mRNA downstream 248799 4821737 ~ 4827915 (-) True LOC122323699
XM_043217748.1 mRNA downstream 248800 4821737 ~ 4827914 (-) False LOC122323699
XM_043217365.1 mRNA upstream 5019 5083893 ~ 5089261 (-) True LOC122323501
XM_043217366.1 mRNA upstream 21995 5100869 ~ 5104342 (-) False LOC122323502
XM_043217933.1 mRNA upstream 59556 5138430 ~ 5143254 (-) True LOC122323831
XM_043218450.1 mRNA upstream 88768 5167642 ~ 5169027 (-) True LOC122324190
XM_043217352.1 mRNA upstream 154907 5233781 ~ 5236532 (-) True LOC122323489
TU192945 other downstream 134882 4808097 ~ 4941832 (-) True G130696
TU192049 other downstream 1926925 3149154 ~ 3149789 (-) True G130083
TU191990 other downstream 2165111 2908489 ~ 2911603 (-) True G130041
TU191925 other downstream 2243758 2825344 ~ 2832956 (-) True G130000
TU191907 other downstream 2325144 2740004 ~ 2751570 (-) True LOC122323398
TU193036 other upstream 8370 5087244 ~ 5104353 (-) False LOC122323502
TU193037 other upstream 8370 5087244 ~ 5222883 (-) True LOC122323502
TU193035 other upstream 21947 5100821 ~ 5104353 (-) False LOC122323502
TU193048 other upstream 62631 5141505 ~ 5158002 (-) True G130744
TU193049 other upstream 62631 5141505 ~ 5260164 (-) False G130744

Expression Profile