RNA id: XM_043217381.1


Basic Information

Item Value
RNA id XM_043217381.1
length 3449
RNA type mRNA
GC content 0.51
exon number 30
gene id vars2
representative False

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 6672539 ~ 6696368 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATCGTTTAACACGTAACATTTTTTCTTGCTTAAAATATTAGCTTCAGTGTGAAACACTCCAGATTTCGGGACATGTGGATGGCTGTGCATGTGGCATCACCCAGAGTCTGGAGCAGGGATCTTCAGAAGGCCTGGAGCACATGGGGATGCAGACTCTGCTCTCAAAGCTCATCTAGCACGCAGTCTTCACAGAATCCCAGGACACAAGCGGAGAAAGCCAAACGCAGACAAGCACGGGAGAAGGCCATACTCAGTGGTGATGCCAGTGGTCCTGGACTAATTTGGTcagataaagagaaaataacGTACACTGCTGCCCTTGTTCCTGGAGAAAAGAAAGACACCTCTCTGCCCTTTCCACAATCCTACAGCCCTGAATATGTGGAGTTTGGCTGGTATCAGTGGTGGGAGAAACAGGGATTCTTCAGGCCTGAGCAGCATAGTAAACAGCCCCATGCTGTTGATAAATATTTCTCCTTATGTATTCCACCGCCGGACGTGACCGGCACTTTACATCTCGGGCACGCGCTGACAGTGGCTATAGAAGATGCTTTGGCTCGCTGGCGACGGATGCAGGGCTACAAGGTCCTCTGGGTTCCCGGCTGTGACCATGCTGGGATCGCAACACAGTCAGTGGTTGAGAGGAAGCTGATGAGGGAGCAGGGGAAGTGCAGACGGGACTACAGTAGAGAGGAGTTCCTCAACCAGGTCTACAGATGGAAAGATGAaaaggGGGATGAAATTTATCATCAGCTGAGAAAACTTGGTTCATCTCTTGACTGGAACAGAGCATGTTTTACAATGGATCCGGGTTTCAGCAGTGCTGTGACGGAGGCCTTTGTCAGGCTGTGTGACTCTGGGCTCATCTATCGCTCTGAAGGTCTGGTCAACTGGAGCTGTGCTTTAGAGTCGGCCATCTCAGACATCGAGGTGGACTCTATGGATCTCTCGGGCAGGACTCTTCTGTCCGTTCCCGGTTATCAGCAGAAAGTGGAGTTTGGGATCATGCTTACATTTGCTTATCCACTGGAGGGACAGGgagGAGAGGTTGCGGTTTCAACCACACGTCCAGAGACGATGCTGGGAGACGTGGCTATTGCTGTTCATCCTGATGACCCTCGATATAAAGATCTTCATGGCAAACACTGCAGGCATCCATTCACAGAGCGCTTATTACCCATCGTCACTGACTCCATAGTGGATATGACTTTTGGCACAgGTGCTGTTAAAGTGACACCAGCTCATGACCACACTGACTTCCTGCTGTCTCAGAGACACTCACTCCCTCGCCTCACTGTGATTGGAGGAGACGGGGCTATGACCTCAGACTGCGGCCAATGGCTAGAGGGTGTTAAGCGATTTGATGCCAGGGAACGTGTAATTACTGCTCTGATGGAGAGGAAGCTGTTCAGAGGAAAGAAGGATCATCCCATGTCATTACCCATCTGCAGTCGTTCTGGAGATGTCATTGAACCGTTGCTGAAGAAACAGTGGTTCGTGCGCTGTCAGGAAATGGGCAGAAAAGCAGTTCAAGCGGTGGAAGAAGGAGAGCTACAGATAATTCCTcacttttacacaaaaatgtggAAGAGCTGGCTGTCCAACATCGgCGATTGGTGTATTTCCAGACAGCTTTGGTGGGGTCACCAGATACCGGCCTATCGAGTGACCGTGGACAACTCAAAGGACACAGAGGAGCAGGAGCAGTGGGTTTGGGGCAGAAGTGCTGCAGAGGCCCGACAGCGTGCCGCTGTGAAGTTTGGGGTCAATCCTGACGCCATCACACTCACACaggACCCAGATGTGCTTGATACCTGGTTCTCTTCTGGTCTCTTCCCGTTCGCGATGCTCGGCTGGCCTCAGCAGACAGAAGACTTGAGACAGTTCTACCCCAATTCCATTCTGGAAACAGGAAGTGACCTCATCTTCTTTTGGGTGGCCAGGATGGTGATGCTAGGCAGAGAGTTGACGGGCCAGCTGCCCTTTAAACAGGTGCTCTTTCACTCTCTGGTGAGAGATAAATATGGGCGGAAGATGAGTAAATCCTTAGGAAACGTCATTGATCCTCTTGATGTCATCTCAGGGGTTTCTTTTGAGAGACTTCAAGAGAAAGTCAAAGAAGGAAACTTGGATCCGAGGGAAAGCGTTGTTGCCATGGAAGCACAGAAGAAAGATTTCCCCAAAGGGATTCCTGAGTGCGGGACGGATGCTTTGAGGTTTGCACTCTGCTCTTATAAAGCCCAGGGAGAAGATATCAGCCTGTCTGTGTCTCATGTGCTGGGCTGTAGACATTTCTGTAATAAGATGTGGCAGACAGTGCGCTTCACCCTCGCCATGCTGCATGATGCAAGTTTACCGACACCATTAGCAGAGACCCATCCTCTATCCAGCATGGACAAGTGGATCTGTTCACGTCTGTACAGCACCGTGCAGCAGTGTGAGAGGGGTTTGGAGAACTACGAGCTCCACATGGTCACATCGGCACTGCACTCTTTCTGGCTGCACAGTCTGTGTGATGTCTACCTGGAAAGCATCAAGCCGCTGTTGAAAGGTGAAGGCTCTGGTTGTGAGGAACAGAGAGCTGGAGAGAGGCAGGCGGCCATGTCTGTGTTGTATCACGCCGTGTCCGTCTCTCTCACGCTCCTCTCACCCTTCATGCCGTTCCTCACGGAGGAGCTGTGGCAGAGACTCCTGCCTTACGCTAACTCTGACGGGACGCCCCGCAGCCTGTGTGTGCAGCCCTACCCAAAGACATCACAGCTGGAGCACTGGTGTTTTCCTAAGGAGGAGGCTGACTTCTCTTTGGTTCAGGAAGTGGTCAGAGTGGCGAGGTTACTGAGGGCCCAGTGCCAGCTGACGAAGGAGAGACCCGAGTTGTGGGCGGTGTGTGCACCGGACCAGGCCGAGACGCTTCTGCGCTTCAGATCAGCGATCTGCACACTGGGCCGGATCTCAGCGTTTCATCTGCACTGTCCAGAGGCGGGTTTGAGCGACTCTCCTGCTCTGCCCAAGGCCAGGGCTGTAGGGACGGTGGATCACTCCATCTGCTTATATCTCAGCATTCAGAATGCTATTAATGCTGACAAACAGGGAGCTCTCCTCTCTCAGCGCAGAGAGAAGCTGGCCTCCAAACTAAAACAAGCCCTCGCTCACACCCAGATGCCCAACTATGCAGAAGAAGTACCTCATAGAGTCAGACAGAAGACAGAGAAAAAGattgcagCCATGGAGCTGGAGCTGAAGAACACCGAGGACCAACTTTTGGCTTTGGAAGACACGAGGAAAGAAGTCTAATggacaaaatattacattcaatCAACAACCAGCGAAAAAGAATACTTTGTACGGAAGCCTTGCAATGgacaatgaaaaaaagcaaaaaagctaGTGTATATTAATAAAGTTGGTTTGGATGTAATACATgcacaataaattatttacaaaagaa

Function

GO:

id name namespace
GO:0006438 valyl-tRNA aminoacylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004832 valine-tRNA ligase activity molecular_function
GO:0002161 aminoacyl-tRNA editing activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193555 lncRNA downstream 232457 6438205 ~ 6440082 (-) True G131114
TU193399 lncRNA downstream 317064 6354956 ~ 6355475 (-) True G130999
TU193381 lncRNA downstream 379273 6248351 ~ 6293266 (-) True G130982
TU193376 lncRNA downstream 436262 6234044 ~ 6236277 (-) True G130978
TU193371 lncRNA downstream 474178 6198125 ~ 6198361 (-) True G130973
TU193661 lncRNA upstream 2349 6693892 ~ 6701605 (-) True G131153
TU193666 lncRNA upstream 2349 6693892 ~ 6701605 (-) False G131153
TU193656 lncRNA upstream 10781 6702324 ~ 6704443 (-) False G131153
TU193657 lncRNA upstream 10781 6702324 ~ 6704443 (-) False G131153
XR_006247006.1 lncRNA upstream 10940 6702483 ~ 6707103 (-) False LOC122323439
XM_043217553.1 mRNA downstream 2153 6660812 ~ 6670386 (-) True mgat1b
XM_043217555.1 mRNA downstream 2608 6660812 ~ 6669931 (-) False mgat1b
XM_043217554.1 mRNA downstream 3944 6660812 ~ 6668595 (-) False mgat1b
XM_043217556.1 mRNA downstream 4752 6660812 ~ 6667787 (-) False mgat1b
XM_043217561.1 mRNA downstream 23334 6648390 ~ 6649205 (-) False polr1h
XM_043217382.1 mRNA upstream 5359 6696902 ~ 6702200 (-) True c19h6orf47
XM_043217257.1 mRNA upstream 25196 6716739 ~ 6725694 (-) True si:ch211-152p11.4
XM_043217947.1 mRNA upstream 70532 6762075 ~ 6765872 (-) True LOC122323845
XM_043218252.1 mRNA upstream 78328 6769871 ~ 6821321 (-) False adcy2b
XM_043218253.1 mRNA upstream 78328 6769871 ~ 6821320 (-) False adcy2b
TU193649 other downstream 23150 6648438 ~ 6649389 (-) True polr1h
TU193577 other downstream 33319 6631189 ~ 6639220 (-) False sh3bp5lb
TU193406 other downstream 309367 6362347 ~ 6363172 (-) True G131006
XR_006247124.1 other downstream 1267321 5405086 ~ 5405218 (-) False LOC122324254
XR_006247125.1 other downstream 1267639 5404769 ~ 5404900 (-) True LOC122324255
XR_006247130.1 other upstream 11780 6703323 ~ 6703389 (-) True LOC122324260
XR_006247131.1 other upstream 12328 6703871 ~ 6703937 (-) True LOC122324261
TU193894 other upstream 665078 7356621 ~ 7360111 (-) True LOC122323893
TU193918 other upstream 703637 7395180 ~ 7397946 (-) True LOC122324169
TU193992 other upstream 910590 7602133 ~ 7605143 (-) True G131373

Expression Profile