RNA id: XM_043217382.1


Basic Information

Item Value
RNA id XM_043217382.1
length 3226
RNA type mRNA
GC content 0.47
exon number 3
gene id c19h6orf47
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 6696902 ~ 6702200 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTACATGCTTGTTCATGTTTTTACCTTTAGCCTATCCGTTTTGTTGCTATTAAAATAACCGCATTTTGAAAATCAACAGAGCAGTTTACCCTGAAGGTCACAGATCCCCGGAGCGAAAGTCATTTGGTCAACGATGACATAATGTAGCCGTTTTTTTTCTACACGTAGTTGTGCGTAGCGACGCCCGGTTTGTGAACGAGTCGTTCTTTTGAGTCGGATCTTTTCGATGACTCTCAAGAGAACAAATTAAAAGAGACGGTTTAGCGTATTTCTTACTAAACGAAGTAAAAGTTGTGTGGTGTTTCGAATTCGGTGTGGCGTACTTGGCTTGCTATTTATAAACTTTCTGGTTAAACGCGATATCGTTGTCTTATTCCTCTCTTGTGGCTTTGAATAGGAGCGTATGCTAAAAACACGAATGTAATAGTATATAGCATCCAGCCAAAAACTATAATACACGTACGATTCGCAATGAAATACTTATAAAGAACAGCGATATGTGGCTTTATGCGGGATGCCACGAATCATAAGGTGAAAGAATCACtgaattgattgattgaacaaGTTCTTTCATATGAACCGTTTGAAGAACCGATTCGCGGCAATGGGACGGACTTCCGTTTGCTAGTCACGTAAACCAGCTTGAACGCTACACAACGACGGTTTATTAGCGCGAGGTTATCTCGGTCGAAACGCCGCGAGTCTGCTGGACTTGAACCGGACGTTATCACCGCCCCTCGTCGAGCCGTTTATGTGCTGAAACGGCTCAAGTCCAAGCATGTTTGCGCCGGCCGCTCGTGAACAGGAAGGTGAAGCTGGCTTCGATGTGAGTGAACCGAGACGTTTTTGCCACTGAAGCAGAGACACTGATGTCTGGAAGATGTAACCGCACGTCTTTGCTGCAGTCACACGACAAAACTAAAGACCTGGTGTCGCAGTAATAGTGCCGCCATGAGCGCAGTTGTCGGGCGAGTTTGGGGTTGGGTCAGTCCAGCGAATCTGTACTCCTCCTGGGGCAGTAAGACCAAACCTGAGAAACCCCCCACATCCGAGATTCAGGCCAGAAGCAGATGGGGCTTATGGGGACTCTCTGGCTGGGTTTGGAGAGGCGAGAAGACCAAAACGGACCAAAAGACGATTGCTGAGGATTTCCGGGAGGCCGAGGAGACCATCGAGCCCTTGAACGTGGAAGAGCTGAGGGCCGATGTTGAGCGGGAGAAAGCGGCCGGCCACAGCTCCTCTCGCTGGTGGAGCCGAATGCTGCCATCCAGATACTTTTTCTGGCCCCGAtggtcgtcgtcgtcgtcgtcccCCGCGCTCCTCCAGCGGAAATGTGCCGGGTGGAGTGAGGGTACGTGGGACAGCGATGAAGTCGACGGGCAGTCGGACTATGGGACGCCTCCGCCGTCTCCCACTCCACCCAAATCTGCATTCCAGTTCTTCTCCCGCTCGTGGACGGGGCAAATCGTGCCGGAGCACTACGACATTTGCTTTAATTTCCTCCGCCACCTCTTTGACTTGTTCGTCGTGGGCTTCCTGACCACCGTATCCCCTCCGACCAAATTCGTTTTGGACGTGCTGGGGGTGCAGGGGGCCCTGAAGCTGTGGCTCCACGGGATGGCCATGTTTCTGGTGTCTTCTGTCGGGATGGCCGGTCTGCTGTGGGTGGTGCAGGAGTACCTGCTGGTGTTTGCCTTGATCTACGGTGTCGTGCAGGCGCTGGTCATCTCTGTCAGTGTGCGCCAGAGTGAAGCTTCGGCAGAGGGGGATGATGGGAAGGGCGACGGAGAGGTCAGAGAGAGCGAGGAGGAACAGGACAACATATGGGAGCAGAATGAGCCACAGCAGACCGGTGACGAAAGCAAGAAAGGAGTTAAACAAAGGAGCTGAAGTCCtagcaaaattttatttttgGTTGTTGACATGCCGATAGTCCAGCCCCGAAATCTTTCACAGAGGATTTAACCACTTCAACACGACTCCCCACGAGCGATCGAAGAGCACCCTGAACGTACCAGCACCTCTTCTTCTCTCCACCACTGCAAGTTTTCGCTCGCTTCAAAACGTACTTTTAACGTTCCCAAAACCGATGTTGACGTAGCACACCAGCAGGAGAGGTAGATGAGCAAAACACTAGAATACACAGCCGCAGCGATAAAACTGTCTGCAAACCCGAAGAACCATGTACAGAACCGAGGAACCAGCAGTGATTGATTGTCAGGGAAATTCACTTTTACCTTTATATGGGATTCAACAGCTTCTCCCCTCCGCACTGTGTGTTCTGCACATCTGCATGTGTCACTTTATTAGTAGCTCGGTGTGGCCTCTAACAGCGTCTCTGGATTGTTCTCATCAGCGATGTCTAACGGCTCGAGTCACCCATCCTTAATTCGGCCCATTAGTCCAGTCGCAGGCAATCTTGGGGAACTTTTTGAGTGCATTATAAAGGAACTGGATgcaaatgaccttttttttttgttgcctcatacttatttttcattcattgatCCTGTTCATAAAAATCCGACTTGCTTATATTTTGGGTTATGTCATTAGAACCACTCCGTGTTTGacgtatatttaaatatgcttcTTTACAACATTAACTGCATGTCttgattactattatttttttttttatgcgttgTCAGTCTTCATCTAGATTTCAGTTGATTATATCTGTCGTGCCTCACAATATCTGGCACTTCGGCCAGTTCACAGGGAATTATGGGTAAAGAAATTAGTAGTAATTTGCACAGTTGCGTACTGACAGCTTATTATCCAATGCTCTGTTGCACAAACGTGTCTCTCGCTTGCAAGAATAGCTTTCTCTTCCTGAATGTGTTCCACAGATAGCGTTTTTATCTATGCATGATATTATAGAACAATGAAATATCTGTGAGTGACTTTAACTTTATGGTACTGGTTTATAACTTTCTAGGTTGGTCGTGTCAGttatttaagcattaaaatgtaGCGCTAGAATTGTTGGATCACGACGACCTCGAGCAATGCAAGAAGACGTGCAACCTTTGAAGGGTctttgaaaagtgtttttccatttttgtaaGCCAGCTGTGAATAGAAATGTCTGCTGTAGAGTGAAATGCATTGCAGCTCAAGGGTGGATGTATCTAGGGTGCGAGATCTACATCTGCAGTTCTTAAGTGCTGCACACCGAGTCTTTAATAATCCttacagctaaaataaacttTCTTTTCCCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193555 lncRNA downstream 256820 6438205 ~ 6440082 (-) True G131114
TU193399 lncRNA downstream 341427 6354956 ~ 6355475 (-) True G130999
TU193381 lncRNA downstream 403636 6248351 ~ 6293266 (-) True G130982
TU193376 lncRNA downstream 460625 6234044 ~ 6236277 (-) True G130978
TU193371 lncRNA downstream 498541 6198125 ~ 6198361 (-) True G130973
TU193656 lncRNA upstream 124 6702324 ~ 6704443 (-) False G131153
TU193657 lncRNA upstream 124 6702324 ~ 6704443 (-) False G131153
XR_006247006.1 lncRNA upstream 283 6702483 ~ 6707103 (-) False LOC122323439
XR_006247005.1 lncRNA upstream 283 6702483 ~ 6704483 (-) False LOC122323439
XR_006247004.1 lncRNA upstream 283 6702483 ~ 6704483 (-) False LOC122323439
XM_043217376.1 mRNA downstream 534 6672539 ~ 6696368 (-) True vars2
XM_043217377.1 mRNA downstream 536 6672539 ~ 6696366 (-) False vars2
XM_043217378.1 mRNA downstream 4909 6672539 ~ 6691993 (-) False vars2
XM_043217379.1 mRNA downstream 5102 6672539 ~ 6691800 (-) False vars2
XM_043217381.1 mRNA downstream 5359 6672539 ~ 6691543 (-) False vars2
XM_043217257.1 mRNA upstream 14539 6716739 ~ 6725694 (-) True si:ch211-152p11.4
XM_043217947.1 mRNA upstream 59875 6762075 ~ 6765872 (-) True LOC122323845
XM_043218252.1 mRNA upstream 67671 6769871 ~ 6821321 (-) False adcy2b
XM_043218253.1 mRNA upstream 67671 6769871 ~ 6821320 (-) False adcy2b
XM_043218251.1 mRNA upstream 67671 6769871 ~ 6821320 (-) True adcy2b
TU193649 other downstream 47513 6648438 ~ 6649389 (-) True polr1h
TU193577 other downstream 57682 6631189 ~ 6639220 (-) False sh3bp5lb
TU193406 other downstream 333730 6362347 ~ 6363172 (-) True G131006
XR_006247124.1 other downstream 1291684 5405086 ~ 5405218 (-) False LOC122324254
XR_006247125.1 other downstream 1292002 5404769 ~ 5404900 (-) True LOC122324255
XR_006247130.1 other upstream 1123 6703323 ~ 6703389 (-) True LOC122324260
XR_006247131.1 other upstream 1671 6703871 ~ 6703937 (-) True LOC122324261
TU193894 other upstream 654421 7356621 ~ 7360111 (-) True LOC122323893
TU193918 other upstream 692980 7395180 ~ 7397946 (-) True LOC122324169
TU193992 other upstream 899933 7602133 ~ 7605143 (-) True G131373

Expression Profile