RNA id: TCONS_00011067


Basic Information

Item Value
RNA id TCONS_00011067
length 999
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id XLOC_005083
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 3281756 ~ 3284909 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTAATTATACACTTTTCCATCATGTAATAGGTTTTGTTTcagatgtatatttacaaattactAAAAGAAATTAGATTCTAGGTCAAATTGTAATTAAAATTCGATGCACCGGTCAAATACTTCAGTAATTACATGTATAGAGTTACAAAAGGTTATCAATGCTGCGAACGATTGCGACGGTGTCAAAAGGCCCTGATTGCTCTTGAATAATGAAGGCTAAAGCTTGGGTTATTACTGTAACTAATACACATTGTTCCGTTCACACCGTCTCCAACTCTAAACACACCACACCAAAGCACACGTCAGAGATTTAACATGGTGTAAGGTTTTCCCTGAGCTTTCTATTGAGGTCTGAACTAAACTGACCTGAACATGCTGAACTGTAAGACTACACGTCCTGCTTCTGCATCCTTCAATTAAATATTCAGTGTGTGCCGAGTGCTTTTGTTTCCGCAGTGATGCAGGATAAATCAAGTTCAAGTCTTAGACGGTCCAGGTGCAGTCTGTGTGCGAGATGTAGATCAGAATTAAGCAAATACCTGCATTTAATTCAGGTGTAGTAACGTTTTGGAATCTGGTGTAGTTTATATACATATGTAGATGGGATTATCCTGGTTATAATGTACTACTATTTATGATCAAGCCATGTTTCTAATGGATCGGTGACTTCGTTTTCTTCTCTTGATTTATGGAGTTTGAGTTCAACCTGGCGGTTCTGGATGAGTAGGGTGGTCTTTTTGGTCTATAGCATCTTTTTTTGAATGGAGTCTCTCATCAGAGCTGGTGGACTGTCGATCTCGAGGGTTTTCCCACATCCCTCACAACATTCCTCACGGCACGTGGCTCCTGGATCTCAGCGGGAACAAGTTGTCGGAGTTGGGGAGCACCTCTTTTATTGGGATATGGGCTCTGAGGGTACTCCTGCTGTCACAGAGCAACATTCGAGTGGTGCATGATCAGGTACGAGTCacttttttgcattgtttttagcTCAACCC

Function

GO:

id name namespace
GO:0021952 central nervous system projection neuron axonogenesis biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00009873 lncRNA downstream 412172 2856861 ~ 2869584 (-) True XLOC_005075
TCONS_00011066 lncRNA downstream 537115 2703355 ~ 2744641 (-) True XLOC_005073
TCONS_00011064 lncRNA downstream 612256 2625669 ~ 2669500 (-) False XLOC_005072
TCONS_00011065 lncRNA downstream 623812 2645615 ~ 2657944 (-) True XLOC_005072
TCONS_00009869 lncRNA downstream 664246 2579237 ~ 2617510 (-) True XLOC_005071
TCONS_00010793 lncRNA upstream 46121 3331030 ~ 3382684 (-) False XLOC_005085
TCONS_00010794 lncRNA upstream 46121 3331030 ~ 3386819 (-) True XLOC_005085
TCONS_00011069 lncRNA upstream 234259 3519168 ~ 3544016 (-) True XLOC_005086
TCONS_00011070 lncRNA upstream 284838 3569747 ~ 3570081 (-) True XLOC_005087
TCONS_00011071 lncRNA upstream 497712 3782621 ~ 3786382 (-) True XLOC_005092
TCONS_00009883 mRNA downstream 29493 3249054 ~ 3252263 (-) True XLOC_005082
TCONS_00009882 mRNA downstream 44195 3220285 ~ 3237561 (-) True XLOC_005081
TCONS_00009881 mRNA downstream 148273 3095699 ~ 3133483 (-) True XLOC_005080
TCONS_00009879 mRNA downstream 204361 3054442 ~ 3077395 (-) False XLOC_005079
TCONS_00009880 mRNA downstream 204361 3058989 ~ 3077395 (-) True XLOC_005079
TCONS_00009884 mRNA upstream 2874 3287783 ~ 3299149 (-) True XLOC_005084
TCONS_00009885 mRNA upstream 29595 3314504 ~ 3453589 (-) False XLOC_005085
TCONS_00009886 mRNA upstream 367106 3652015 ~ 3705862 (-) False XLOC_005088
TCONS_00009887 mRNA upstream 367312 3652221 ~ 3705862 (-) True XLOC_005088
TCONS_00009888 mRNA upstream 429167 3714076 ~ 3721957 (-) True XLOC_005089
TCONS_00009859 other downstream 1791168 1490472 ~ 1490588 (-) True XLOC_005063
TCONS_00009831 other downstream 2659467 619669 ~ 622289 (-) False XLOC_005047
TCONS_00009912 other upstream 1001457 4286366 ~ 4286480 (-) True XLOC_005112
TCONS_00009914 other upstream 1010640 4295549 ~ 4298284 (-) False XLOC_005113
TCONS_00009915 other upstream 1012948 4297857 ~ 4301375 (-) False XLOC_005113
TCONS_00009917 other upstream 1013318 4298227 ~ 4301376 (-) True XLOC_005113
TCONS_00009948 other upstream 2114771 5399680 ~ 5418340 (-) False XLOC_005137

Expression Profile

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