RNA id: XM_043217395.1


Basic Information

Item Value
RNA id XM_043217395.1
length 3421
RNA type mRNA
GC content 0.52
exon number 16
gene id LOC122323516
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 15232063 ~ 15276474 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCCCGGGCACCTACAAGATGTCGTCACGGCAACAAGAGTGTTTCCCGTGTCCGACTAACAGCAAGGCTGAAGAAGAGGgctctgtgctgtgtgtgtgcgaggaTGACCACTTCAGAACTCCACTGGACCCTCCGTCTGCTCCGTGCACCCGTCCCCCTTCTCCACCTCGAGATCTGGTCTACACCCTCAAACAGTCCACGCTCATTCTAGAGTGGGCCGCTCCAAATGATTCGGGCGGCCGAGGGGATCTCACCTACAGCATAGGCTGCCGGCGATGCGTCGGCCCCCCGCGGGCCCCGCAGGTGCAGTGTGAACCCTGCGGAGCCAGCGTGGGCTTCGTACCACAGCAGAGCGGCCTGACAGAGCGCACAGTCACCGTAGTCAACCTGCTGCCCAATTCCAACTACTCCTTCAGCGTGGAGGCCCGGAACGGCGTCTCGGAGTTACTCCCCAACAAGAGGTTCTACACGCAGGTCAACATCTCCACCAGCCTTCCAGCGCCTTCCCAGGTTAACGAGCTGCGAGCGGAGAAGGTTGAGCAGCGCAGTGTGACTCTGGTTTGGAGAGAACCCGTCGTGTATCCCAACAGCAGCCGCACTGAATACGAGATCAAATACTATGAGAAGGACCAGAAAGATCAGAGTTACTCCACGGTGAAGACGGCTGCCACCAGAATCAGCGTCAACAACCTGAAACCAGGCACTACCTATGTCTTCCTCATCCGCACCTGCTCCAGCCCAGcactttcttctctttcttcctctcctctttcttcctcctcctcctcctcttcctcatcctctttGTCTCCATCTTCCCCGTctgcttcctcttcctcctccagcCCCGTGGCAGCTGTGTCGCCCCCTCCGCTCGACTACGGGGCGTACAGCACACCTCTGGAGCTGCAGACGCTGGGGGAACTGGCCCTGGCCTCCAGTGAACAGAGTCCTGTGGTGATCATCGTGGTGGTTTCGGTGGCTGCTCTCATCATGTTGCTGACTCTTGGAGTTGGACTGCTCATCTGGAGAAGTGGCTTCTCCAGACCCTCCAATGTAGCTCCTACTCGTGTGGTGCTGCTCTCTACCTCCTTCTCtactcttcctcctcctcctcttcctccctccaCGCAGCTGTCTCCCAGACAGTGTGGCTACAGTAAAGCCAGCCAGGAGGGCGATGAGGAACTCTACTTCCAGTttaagaTCCCAACCAGAAGAACCTACATTGACCCAGAAACCTGTGAAGATTTGCTTCAGGCTGTTCATGCATTTGCCAAAGAGCTGGACATCTCTAGCATCAAGATCGAGAGGATAGTCCATACAGGAGACTTTGGGGAGGTGTGTCGAGGATGCCTGAAGCTTCCCAGCAAACGCGCGAGTTGCGTGGCCATAAAGACCCTTCGTGCGGGCTGCTCGGAAAAACAGAGACGCTCATTCCTCAGCGAGGCGGGAATTCTGGGACAGTTCGATCATGCCAACATTGTGCGTCTGGAGGGAGTCATCACCAGAGGCAACACTATGATGATTGTGGTAGAGAGCATGGCCAACGGATCCCTGGACTCTTTCCTGCGGAAACATGAAGGTCAGTTGACCGTTCTTCAGCTGGTGGATTTGCTGAGCGGAGTGGCATCTGGGATGAAGTATCTGACAGAGATGGGTTTTATCCATCGCCGACTGGCCGCTCACAAAGTCCTGGTGAACAGCAGCCTGGTCTGCAAAGTGTCAGGCTTCAGACCTCTTCAGGACGACAAAATAGAGGCGGTCTACAGCACACTACACGGAGGGAAGAGTCTGGTGTTGTGGACGGCTCCAGAGGCCATACAGTACCATCGTTACAGCTCAGCTTCTGATGTGTGGAGCTTCGGTATTGTCATGTGGGAAGTCATGTCCTTCGGGGAGAGACCGTATTGGGACATGGGCAACCAAGACgtAATAAAAGCTATAGAGGATGGGTTTCGGTTACCTGCTCCCGTGAACTGCCCGCCGTCTCTGCACCAGCTCATGCTGGATTGCTGGCAGAAGGAGAGAACAGAGAGACCCACCTTCACCCAGATCCACAGCGCTCTCAGCAAGACCATGAGGAGCCCGGACAACATCGGGTCCTCCACCCTGGGACGCAGGACCCTGGGCTCATCTGTATCCCTAGCAGAACGAACGCTTCCCTCCTTCCCTTCATTTAGTTCAGTAGGAGAGTGGTTAGAAGCTGTAGACATGGGCCGCTACAAAGACAACTTCACAGCCGCTGGATACTGTTACCTGGAATCAGTGGCTCGCATGACCGTTCAGGACGTGCTGAGTCTCGGCATCACCTCTCTGGAGCACCAGAAACAGATCCTGTCTGCCATACAGACTCTCAGAGCGCAGGTTATCCAGATGCACGGCCGAGGAGTGCAAGTCTGACAGACCCACAGCAGTGCGCTGGCTTACCGAGGAAAGACATATGGATGTCTGTTCTCATAATTACCCAGCAGGCCATTCAACGGTCAGGAGGTGATAACCAAGACACTGCAAATGGCGTTTTTCTTCCTAATCTTCCCTTTTTCATTCCTTTTATCTTCTCTTTGGGTGAACACTGGTTCTTTTCTTCCACAAACAAGTTCTTGTTTTCTGAGGGGGACAATGTCACAAGCAAGATGATTCCTCTAGAATAACCTGCGTGCTGATTGCTTTTCTTCCGCTGTTCATCAAGACATAAGATCTGTCCGTATTAGTAGGACTTTAAGATGGTCTGTGCCCTCCGTCACTGTCCCCGGAGAAGGGCAGGTTGACTCTGACCGATCTCAGAGCAATCAAAAGGGCGGCATGTATTTTCTTTGTCCAAGAAAAAGAACTCATGCTTTGTAGCCACTGATCCTCCTATAAAGTGGACTAAACCGAGAGCATGTCATCCATAGAACATCTCGCTGTATCTTCAGGAAATAAGTACTGATGTAAGgaatcttaaaaatgtaaatcccTTTCTCCGTGTGTATTCTTCATTTGGTTACTgtctactttttttcttttgctttctttcctCCACACTTTAAACTCATTTCTGAATTTCCGAGTTGAAATTAGTATTGTCTGACATCTGTACTCGTAATGTTTTTCTTGTTCTGTCTACTATAGGGACAATGTTTGCACTGCGGCGTCCATGACTTACAGAAACTTGTACCATATTTATTAGATGATTTATTTATCCGTTTACAGATGCTTACCGGAGTTTGAACTGAATCTGGGCGTTCAGGTTTCGTTTCATGAAAACGCTCTTTGATTTCGtttgtgtgatttaattttttcctgCACTTTGAAAGCGAGTGAGTCAGTGGATGTGACGGggatgtatacacacatacattcacacgCTTACAAATTTCATTACACTCCGCAACAGCAGGTGTCTGATACTCTCGGACATGTTTAGTACTTGGTGTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247096.1 lncRNA upstream 196641 15022275 ~ 15035422 (+) True LOC122324050
TU196536 lncRNA upstream 474087 14757624 ~ 14757976 (+) True G133068
TU196330 lncRNA upstream 649647 14175839 ~ 14582416 (+) True G132916
TU196327 lncRNA upstream 1063579 14168095 ~ 14168484 (+) True G132913
TU196318 lncRNA upstream 1125802 14097276 ~ 14106261 (+) True G132910
TU196618 lncRNA downstream 33194 15309668 ~ 15312832 (+) False LOC122323314
TU196629 lncRNA downstream 98026 15374500 ~ 15378019 (+) True G133129
TU196781 lncRNA downstream 183864 15460338 ~ 15460706 (+) True G133253
TU196784 lncRNA downstream 205524 15481998 ~ 15483517 (+) True G133256
TU196793 lncRNA downstream 272370 15548844 ~ 15549137 (+) True G133265
XM_043217059.1 mRNA upstream 5380 15211167 ~ 15226683 (+) True LOC122323313
XM_043217398.1 mRNA upstream 39497 15078454 ~ 15192566 (+) True LOC122323518
XM_043217239.1 mRNA upstream 270493 14958607 ~ 14961570 (+) True cdca8
XM_043217241.1 mRNA upstream 270493 14958648 ~ 14961570 (+) False cdca8
XM_043217240.1 mRNA upstream 270493 14958651 ~ 14961570 (+) False cdca8
XM_043217061.1 mRNA downstream 32253 15308727 ~ 15313877 (+) True LOC122323314
XM_043218343.1 mRNA downstream 37383 15313857 ~ 15319770 (+) True LOC122324124
XM_043217062.1 mRNA downstream 51193 15327667 ~ 15350247 (+) True crybg2
XM_043218332.1 mRNA downstream 79134 15355608 ~ 15360434 (+) False anxa14
XM_043218331.1 mRNA downstream 79141 15355615 ~ 15360434 (+) False anxa14
TU196534 other upstream 19633 14787544 ~ 15212430 (+) True G133066
TU196586 other upstream 44224 15149304 ~ 15187839 (+) False LOC122323518
TU196550 other upstream 394111 14834637 ~ 14837952 (+) False LOC122323257
XR_006247120.1 other upstream 1926919 13305006 ~ 13305144 (+) True LOC122324249
TU195256 other upstream 3708182 11522266 ~ 11523881 (+) True LOC122323782
TU196623 other downstream 80266 15356740 ~ 15361845 (+) True anxa14
unassigned_transcript_2195 other downstream 102996 15379470 ~ 15379541 (+) True trnap-agg_21
TU196767 other downstream 144661 15421135 ~ 15424492 (+) True cckb
TU196794 other downstream 293190 15569664 ~ 15577981 (+) True G133266
TU196987 other downstream 498783 15775257 ~ 15776674 (+) False hoxa5a

Expression Profile