RNA id: XM_043217405.1


Basic Information

Item Value
RNA id XM_043217405.1
length 2135
RNA type mRNA
GC content 0.40
exon number 4
gene id umad1
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 5706149 ~ 5716287 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACGGAGCGAAAAAACAGTCGGACACGGCGTGGGAAGGACTCGTAAACAAAACTTCGGTCGAGTAACATCAGCTCGGTTTTTATACTACAAACGaagctaaatataattaagAAATTcatcacagacacacaagatgTTGAAGTTCTTCGGGTTCAAGAATGATGGTGCCAAAAAATCCTCCGAGAGAGAAACCGATGGGTTTGTCATCATTGgTGAAACTGTTGAGGAGCAGAGACAAAAGATACAGTCCATGAACATTGAGCAGCCTGCAACAAATGTAATAGTACAACCATCTAAGcCATCCAGTGCCGGGAACAGAGGAAATGCAGAGACGCCTCGGCCTACCTCCCAGCCCACGTCTGCCAGGACGTCGTCAGAAACGCCCGCCGTAGACGCCGCCCCAGCCCTCCCCGAGCTCCTAGGAGACATACCTTTCACTTTAGCGCCACACATCGTGGCCATGCAGGCGGGCCTGCCCTTCGTAACGGATATCACCCTGCCTCACGACATAAATGACAAACTAGCCCACTTTCGTTACGACTTCACCTTGGAGAACTCCGTGCTTTGTGAGCCGTGACTCTTTGCCCGTCGGTTATATCTCGAAGCGCGCGGTGAACTACGACCCTTGGGCTGTCAGGATTCTCTTTAACCGTTTGCCTCTTAAACAAACCAAGATCTAGTTTAGCTGAGAAAAAATCAGTGGCTTACTGAAGGGTGTTGGGCTCAACCGAACATAACGTCCTTTTTAGTTAGCATCAAGGTGGTTTACCACCTCTCAGGATCTTGCGCTTGATTGTGGGATGAGCGTTACTGCCACGTTTTAGCGCAGTAGACAAGTATTTATAAGACGACACGccactttacatttttcaaatgtagtTCAAATTTTTACGGGTGTAAAATCTGTAGCATAAGATGATATGCTAAGCTGAAATAAGGTTGTTCTGTGTTGGCCTTCCtttagttttttcttacttttgcAAAGACTCACTGCAATCGGTTTTAAGATCATTGACCGAAAGTAGTTATATAGTAATCTATCTCTCCATGATCTTTACACAAGTAAGATGAATAATTCAGTAATAGAAGtatttaattcaaatacaagttatatttaaatatgtttatatagtcCGCTATttacagtaactcttcatttaGTACCTATAAACCTTAAAGGGGAAGCCAAAACACTTCCTGTCTGCTATTAGTCAGTCAGATAAATAGTCCCGCTCTAAACTGTTGCTATTGGTTGAGTCAAATGGTTAGTTGGGATGTGCAAAACGGAACAATGACGTAGTTTTGCACTTTTCAGGGGAATCGGGATACAATATAGCTTACTTGGAGTTGTCTCTGTATATTACTTTGggatataaagtatttttacatcACGTATCACTTTAAGTTACTTATAAATGGATTGCACTTAAAATCATGAGACATCGTACATAGGCCAATATTACATCTCTTTGTTTGTaaaagtgtgcttttttttcagttcgTGTGAATATGCATACCTCGAATGGTGGTGTTTGGTTTTAATGCATGACATTTTTAGGGTTCTGCCTGAACGTGACACACCCCATTTTGGGAGGCAGATATGTATTTTGAACAAAGTTTGATTGCAAAAACATGCACATGGGTTTTAGTAGGATTTACTGTTCTGTTTGAGTAGGCCACGCAGTTGTCAAACTGTTTCTTTCATCTGAATTTCGGTTAATGAATGGGTTTTATTTTAGTGCGTGCTGCTATTCAATGCACTCAGGAGTTTAGCTGTGTCTCCTTCACATCCTCTGTACTTTACTTGATATCacttcatttatcatttttgttcattaaaaaaaagtctatttgaTTAGTCTTTGTTTTGATGTGTCTGTCATCTAAGCTTCCTCCTATGTATCAGACTCAATGTACTGAAGTAATCAAAATTGTGTTGTGTCTGCTCtataaaaatgtctataaaataatttaatgccaCTTCTTTAGGTAAATCAACTTAGATACGTTGTTGGATTCTTTACTGATTCATATCTGGAACAGAATTCATTGATTCTGATCCCACatgatgtttatgtttaattcTGAGCATGTAATATGGtgttgtttcattaaaatattgtttgataACTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193252 lncRNA downstream 31271 5674554 ~ 5674878 (-) True G130880
TU193179 lncRNA downstream 183183 5520939 ~ 5522966 (-) True G130827
TU193178 lncRNA downstream 183529 5520939 ~ 5522620 (-) False G130827
TU193134 lncRNA downstream 265284 5440426 ~ 5440865 (-) True G130804
TU193130 lncRNA downstream 272220 5433562 ~ 5433929 (-) True G130801
TU193297 lncRNA upstream 29561 5745848 ~ 5876713 (-) True G130914
TU193304 lncRNA upstream 36298 5752585 ~ 5883367 (-) True G130920
XR_006247116.1 lncRNA upstream 122506 5838793 ~ 5847759 (-) True LOC122324223
TU193350 lncRNA upstream 390852 6107139 ~ 6162535 (-) True G130955
TU193367 lncRNA upstream 436752 6153039 ~ 6155564 (-) True G130969
XM_043217403.1 mRNA downstream 839 5675485 ~ 5705310 (-) True glcci1a
XM_043218143.1 mRNA downstream 35778 5614268 ~ 5670371 (-) True rims3
XM_043217785.1 mRNA downstream 96290 5586537 ~ 5609859 (-) False ptp4a3a
XM_043217784.1 mRNA downstream 109121 5586537 ~ 5597028 (-) True ptp4a3a
XM_043217058.1 mRNA downstream 178979 5523080 ~ 5527170 (-) True xkr8.3
XM_043217226.1 mRNA upstream 23032 5739319 ~ 5744577 (-) True LOC122323412
XM_043217941.1 mRNA upstream 95697 5811984 ~ 5836378 (-) True LOC122323838
XM_043217637.1 mRNA upstream 207338 5923625 ~ 5932827 (-) False asns
XM_043217638.1 mRNA upstream 207338 5923625 ~ 5932020 (-) True asns
XM_043217639.1 mRNA upstream 217345 5933632 ~ 5938584 (-) True bloc1s4
XR_006247124.1 other downstream 300931 5405086 ~ 5405218 (-) False LOC122324254
XR_006247125.1 other downstream 301249 5404769 ~ 5404900 (-) True LOC122324255
TU193049 other downstream 445985 5141505 ~ 5260164 (-) False G130744
TU193082 other downstream 453960 5245353 ~ 5252189 (-) True G130763
TU193048 other downstream 548147 5141505 ~ 5158002 (-) True G130744
TU193406 other upstream 646060 6362347 ~ 6363172 (-) True G131006
TU193577 other upstream 914902 6631189 ~ 6639220 (-) False sh3bp5lb
TU193649 other upstream 932151 6648438 ~ 6649389 (-) True polr1h
XR_006247130.1 other upstream 987036 6703323 ~ 6703389 (-) True LOC122324260
XR_006247131.1 other upstream 987584 6703871 ~ 6703937 (-) True LOC122324261

Expression Profile