RNA id: XM_043217414.1


Basic Information

Item Value
RNA id XM_043217414.1
length 1743
RNA type mRNA
GC content 0.42
exon number 5
gene id cbx3a
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 15843683 ~ 15847374 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGCTTTACGTCCTCGCGTAAGATTCAGACTGGCCTTCGTCGAGCCACCGTCGACTTCTGTTTCATTGATTTATAGTGTGCGACCagagaaaaagttttaaaagtttgcGTCCTACTAAAGTCTTACGTAATTTCGTTGTAGCAGTTTGCGGGTCAGCAAGCGTGAAGCGTTGCTATTCACATTTTAGTCCTTTTTCTTTGTGAGGGTGAGTTTTCGCGCGCATGCATGTGCTGCAGCACCGTCCGTCCATTGTAGTTAGCTGTTAAGAATGCTGTAACCTCGATTATTgcaatacttatttttttaaaaatcaattttttgttgttttagtttgcATAGGTGTCGGATGCATGAATCTGCGAAGCTGTAcgatttttggtttttttgtgtgcGCATTTTCCGGCTAACTTAGCTAGGAAGCTAACTCCTGCTGTTTAAACCAGCGCGTGTTGTAACGTCTACTGCGCGAGCTACGATTTGTAAAATAGACCTAAACCCGGAGTGTAACGTTTTACagatataataaacaaacaataatctAAAAACACAACGTTAGCGTGAACTGCGTTTGGGCCCCCGGCCTGTTCGTGCATGCGCAGTTAGCTCGTTAACATACTAGCATAAAGTAAAAGGTTGCACAAATCGAAGTCGTTAACGTGGTaactttttctctttctaatGAAATAACGGATCATGTCTGTCGACATGGGCAAGAAGCAGGGAGCCAAATCAAAGAAGGAAGTTCAGGAGGTGGAGGAGTTTGTTGTGGAGAAGGTGATTGACCAGCGAGTGGTCAATGGTAAAGTTGAGTTTTTCCTCAAGTGGAAAGGTTTCTCAGAtgctGACAACACTTGGGAGCCTGAAGAGAATTTGGACTGCCCTGAACTGATTTCTGCGTTCCTGGAGTCTCAGAAAGGAGTGGTAGAGAAACCAGAAgctgtaaaaagaaaatcctcCACTGATGAGCCAGAAACCGATGAGAGCAAGGCgaagagaaagaaggaaatgTCTGACAAGCCAAGAGGGTTTGCAAGAAACCTTGAGCCAGAGAGGATCATTGGGGCGACTGATAGCAGCGGAGAGCTCATGTTTCTCATGAAGTGGAAGGACTCTGATGAGGCGGACCTGGTACCTGCGAAAGAGGCCAACACTCGTTGCCCACAGATAGTCATTGCCTTTTATGAGGAAAGACTAACTTGGCATTCCTGTCCTGAGGATGAGCAACAGTAGCACCCCACGTCTGAATTGTGCTTCAGTGTCCTCCACCTGTACAGTGTTAGCGGAAGTGTTCATAGCCTGACGGTGGAggtgttccttttttttttttttataaatgtattgagATTTGGCTGGAAGCTATATGCATGACTGTAGTGAACCAATGAAAGTATGTACAAATGAGgtgagtgtgtttttaaaagttactCTGTAGGGCGCTTTGTTAATTTGACTAGGCGTCACAGCAGTGCTGTTCATCATTAATGCACTGgtttgtgtgggttttttttttttgctgttgtttttgtttcttttttgtttttctcccacTCATCATTCAGAAAGATCAAAACATTCTGTTCATAGTTTCTTCTGGTGGACAATACTGTCATTACcctagttgttttgttttttttcccctttattaTTGTTTACCTCAATGTTGAAATTGTCTGTTTATGTAAATGCCTgtgtaaatatttcttattttttagtTCAATAAAGGTTTATATGCCTGCTTTTAA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K11586 CBX3, HP1G; chromobox protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247022.1 lncRNA downstream 40871 15800785 ~ 15802812 (-) True LOC122323540
XR_006247021.1 lncRNA downstream 44555 15797298 ~ 15799128 (-) True LOC122323539
TU197050 lncRNA downstream 64049 15779090 ~ 15779634 (-) True G133450
TU197044 lncRNA downstream 72605 15770695 ~ 15771078 (-) True G133444
TU196976 lncRNA downstream 84043 15759348 ~ 15759640 (-) True G133392
TU197074 lncRNA upstream 8290 15855664 ~ 15855934 (-) True G133469
TU197075 lncRNA upstream 15568 15862942 ~ 15863149 (-) True G133470
TU197081 lncRNA upstream 33570 15880944 ~ 15881577 (-) True G133476
TU197099 lncRNA upstream 49442 15896816 ~ 15898769 (-) True G133487
TU197116 lncRNA upstream 90066 15937440 ~ 15938811 (-) True G133499
XM_043217413.1 mRNA downstream 3775 15834904 ~ 15839908 (-) True snx10a
XM_043218293.1 mRNA downstream 103354 15736947 ~ 15740329 (-) True evx1
XM_043217654.1 mRNA downstream 141528 15685154 ~ 15702155 (-) True tax1bp1a
XM_043218480.1 mRNA downstream 174718 15661683 ~ 15668965 (-) False creb5a
XM_043217412.1 mRNA upstream 1224 15848598 ~ 15854316 (-) True nfe2l3
XM_043217911.1 mRNA upstream 55417 15902791 ~ 15919610 (-) False pals2b
XM_043217913.1 mRNA upstream 55417 15902791 ~ 15919610 (-) False pals2b
XM_043217908.1 mRNA upstream 55417 15902791 ~ 15919610 (-) False pals2b
XM_043217904.1 mRNA upstream 55417 15902791 ~ 15919610 (-) False pals2b
TU196955 other downstream 182963 15659919 ~ 15660720 (-) True G133373
TU196948 other downstream 195104 15644862 ~ 15648579 (-) True LOC122323308
unassigned_transcript_2196 other downstream 458417 15385195 ~ 15385266 (-) True trnap-agg_22
TU196741 other downstream 473947 15366434 ~ 15369736 (-) True G133217
TU196661 other downstream 951787 14891427 ~ 14891896 (-) False zgc:114119
TU197117 other upstream 74849 15922223 ~ 15924285 (-) True npy
TU197532 other upstream 433583 16280957 ~ 16508560 (-) False mbpa
TU197530 other upstream 504495 16351869 ~ 16508560 (-) True mbpa
TU197533 other upstream 512417 16359791 ~ 16508560 (-) False mbpa
TU197531 other upstream 653571 16500945 ~ 16508560 (-) False mbpa

Expression Profile