RNA id: XM_043217431.1


Basic Information

Item Value
RNA id XM_043217431.1
length 5433
RNA type mRNA
GC content 0.43
exon number 9
gene id kiaa1522
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 8376208 ~ 8412834 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGAGTCGGGGTGGGAGGGAGCCAGCTTGTCATTGTGAAATAGTTGGGTGGAATACACGTGTGAACTGCAGCTCCTCTCTGCACTGCGCTGAATGGTGACCAGGAGACAGGACAGGAGGGGGAGGACTGACCAGCATGGAGCTCCACTCACCCAAAAAGAGCTGAATAAACAGTACAACACAGCTCTGCAGCAAAGACAAGACACACACtgagaaacacagacaaaagGACGCAAGGAAAGGAAAGCAAGAGGCGGAGGAACTTCACTGCCTGCTTTTGCATGAGGTGTTTGGAGTGGAACAGGAGAGCAGTCAGAGATCAGTGGTCATTGGTCTCAGGATGTCCAGGAGCAGCTCTGCGGGCGATTTGGTACCCAAAGACATTACTGAAATACTGGCCTTGCAGCAGGCCAGTAAGAAGAAACGGGGTTCATCCTTAGGCCGGGCTTTCAGCTGGTTCAAAGGCAGTAAACGCAAGAGGAGTCTCAGCAATGGGCATAGCAGGTCAGGAGGTCCATGTGGACGGTCTGGAGAGAGCACTACAGCCAAACCCATTCATGCCAGTGGTGACACTAAAGCAGGccaaaagcagaatgagccaAGAAAGCTGACTGTACACTACACCGCCTCCCAGCACTACCAGGAGAACGTGTTCATAGAGGGAAGCAGACCACAGTATCTGGAAGACCTGCATACTGAGGCCCAAGAGGGATTGAAGATACTACAACAGGAGGAGAACAAAAATGGAGTGGACTTTCAGGATGATCAGACCATGCCAGAGGAAGATACAAGctcaaaagaaagagatgaATCACTTGAGACTGATAGCACTGCTGGACACTCCATCATTTCAGTGTCAACTGTCTCAGCAGTCTCCTCACGCCCAGTGCTTACACGTCAAGGTTCCACATTTAAACCCTTGAACCCAGTTAAACGACTGGACAAGACCAAGAGGAGAAGTAGAAGAACAACTATAATGGGCATACCACAACAAGTCCAAAGAGAATTGGatATGGCAAGAGGAACTATACTGCATCAGCATGCAAATGGAGAACACAACAGTGAAGATGATTCCTGTGGCAGAGTTGTCATCCCAACAATTGATGGAGAGCTTCCTTCAATAAATCATGAAGGGGCTCGTGTACATCTGCAGAACATTGAGGTTCTTCAGACATCAAGAGATGAGGAGTTTCTTATAAACCACATTCATTCTGTCTACCAAGATGAGTTGAACCGAAAGCTTGGGATAGCAGCATGCTCTACACAGAGGCCAAAGTCCCTTGCTGTGCCAGGGATGACCACTTCCTCTTTCCTGCATGAGCCTCAAGGTCCCGTTATGTCTATTTCACCACAGGCAACTTATTTATCTAAGATTATTCCGAACGCAATTCTGCCTGCTGCAATAGACATAATTGAAATTAATCATGATCACAGCCGGCGCAGTACAAGTACAGTTAGCAAGAGTAGTTTAGCATCAGCTAGTCCAGCTTCTTCACGATCTGGAGGTAGCACAAATCAAAATCCAACTACCGCTAGCCCCAACAGGAGCCATTCACAATCATCTGAGACTATTGTCTCCAACTCCTCCACAATTTCCTCAAAAGCAAAGTGTCTACCAACATTCGTTACTGACAGCACCAAAGAAGTTTCAGATTTAATCCCAAAGGATGTAAGTGTTACAAGCTCAAGCAgttgtaaaagttttaatagTAACGGTACAAATCAAAGACTAGATCACAGGGAGATGAGTGAAGTAGGGGAAAATGTCAGAAACAGCCAATCGTTCTCTCGTAGTCTCTCTGTAATGAAGACAAAATTGCCACCCGCACCACCTCAGAGAACCTATTCCCTGCACCATGAAAAACTTAAGCGAAGATCAAGGGAACAGGTAGATATAAAAGGTCTCAAAAATATTGCCCGAGATGATGGCCATACAGGTAGAGATCTTAAAGGTACAAAAGACCATGAGTCCACCAATAATGAGAAAGGTTCTGTCCATTCTTCAGTGCTCAACTCATCAAGAGAACGCAGCCCACTTAGTCCTGATCAAGCTTTTGCTAGATGTCATGTCAGATCAGGTAACTCATCCCCGCAGAAAACTGGAGAAGAATCTAGTGAAAACAAATTTGATAGGACTTTGTCTCCTTCGAGTGGATACTCAAGCCAAAGTGGGACACCTACGCATTCCCCTAAAGAGGTCAGTCCATCCTCACCTGGAAAAAGAAGAGTTAAGCCTTCAAAGCCTGAGCGAACAGGTGTACGGACATCGCCAGTGGTTTCAGTCTCTTCATCAATGACATCTCTATCTTCAGTCACATCAGACACGGCACATCATGACATTCAAACCAACACCACTCCATCAGAGCCATTCAAGTGTTCCCCACCTGTTACAACAGTGAAAAACAAGGTGACGCTGACACACCCAACTATTCCCCTTAGGGAACTGTTCAACATCCCCCCTCCTCCCAAGGTAAAAGCCCCATCTCCCCAACCCCCTGAAACCTGGATCCACAATAAACGCACACTTGAACTATTGTGTGGCCCAGGTCCAAACCCCCAAAAGTTACACCAACTTCAGAAACAGCAGAAAGagtcattaataaaaaatcaaaacacaaattatatacaaatcaCTGAACAAATACTCCCAAAGATACAGacaacagaagaaataaagtcaggtAACCAACTGGAGAACAAAGAAGctgtaaaagaacaaaatgcGTCGGTGTCATCACAAGTACTTGAAGAAATGATGGCAGAACCTCCAGATTTGAGGCATAATGAAACCTCAACATCAAACAAAGCACTAAATGAAGTAGAAAGTACAAAAATCCCTACAGAGGTCATTCAGAACATTCATACACAAGATCAGACAACTGTAGAGGaccaaaaggaaaaaagaagccAAATACTCCCTACAATGAAAGTACCAACTATCAAAGTTGATCAAAGTATGTTGTTACAGACAAACTGTGCAGTCAAAACAAGTCCTGAAATCGTGATCACAGCATGCACATTAAGCAATGATGAAACTGGGGAGGGCAACAAAGGAAACTGCCTTGTTAAGGACATTCTCAATTATAAACAAGTGCAAACTCTTGACATTGAAGTAGCTGAGGTGAATGGAatttctcctcctccttctccaccTCCAGAACACCACCCTCCACCACCACCTACTAAAAAGACATCAGCTTCCTCAGGGTGTATACCACCATCTGATAAAGAGGAACAGAAGCAAGAAACAGAGGAACAGGTGACTCTTCTGGAGACTTCGTGGCCTCCACCACCGCCACCAATGGAAGAATCAACTGAATTGTTGTTTGAGGAACAAGATGAACTTGATTTCCCCCCACCACCTCCCTCATTAATCCATGAACCCCTTTCGGGAGTATCTGTAAACTGCCACAAAGAGTCCTGTGAACAGCATGACAATATAGAATTGAGGTTATCTAATGCCTCAGATATGGCTAGCAGTCCAAAACAAGACTCCAAAAAACAGAGCATTCTGCCAACAAGAACCTTACAAAATGATATGGAGGTCAACAATGCCTCAAACCTCTCTGTGGACGAAGGTGGCATGGAAACTGTAGCTCCTACTAAAATGTCCTATCTTTTAGCAGATGCACTTGTACAAGTGGAGGAAACGCCAACTTTGTCAGCACAAGAATCATTAGAGCAAACACCACATGATACCCAAGCAGATTCCACTAACGTGCCCCTGGCACCTCCACTTCCAGCGGAAGACCAATCCACCATTAACTTCCGAAGGCAACTGAGCCTACTAAACAAGGACAGCCGGAGCAAAGACCTGCTTTGTCGTCACAAAAGCACATCTACTCCAAAGGAGGATGCTAACATTCCCCTTGTCACCCCTTCCTTGCTTCAGATGGTTCGGTTACGATCTGTAAATGTAGCTGAAGATCAAGTTAACAATAATACCAAAGCAAGTGTTGAGGCCACAACTGAGGATCACAGTATTACAAGTCAAGCAACGCCACAAAAGCCTATTCGCAAATCCTTGTCCTTGAAGTCCAACTCACCTGCTAAGTCACCTCCTACTCCAGCCACAGCCCCATCCATGCGTCTTCAAGAGGCCATACGTATGAAGACTGCTGCAATGTCCTCCAGTGGAGTACCTGCAATGCTCAATCTACGCTTTTCCTCAAATAGCAGTGCTAGCTCACCTGTGCCATCCCCTAAAACACCAGACGGCTGTGACTTACATAAGTCCCCTGCATCTACAGCTAGCTTTATCttctcaaaaagcacaaagaaagtgGTCATTGAAACACCTACTTCTCCAGAGGTCCAAGCAAACCTCAAACAAAGTCTTGCAGCTGAGATAATACAGGTTTCTGGCCAAGCCAAGACAATGGTTACAAATGGAACAAAAAAGCCAATTAAGGTGCCGCCACCTGTTGCTAAGAAACCAGTGCATGGTACAAATCCTCCTAATAAGACAGAGAATGCAACACCGGATAAGACTGAGATCTTGacgaataaacaaataatgatgGTTGAAGTTAATGGGCAAAATGATCAAGTGCATCCTGCTGGTCAGCGAGCACAAACATTAGGAAACCAGAAGCAACCAAgaAGTACAGAGACTGCATGTTGAAGGACACACGACTTGAGTTTTGATTGGACTGTTTATAGTCAGAGCACGGGATAAACAAGAGGACAAAGAAAGTGACGAAAGCCCAAGATAGGTGTTCAAGGATCCATGGATACCACAGCTGTCTTAAAAGCCTTAGCCTGGAGAAATGGCCTTCAATTGTATGCAAAAAGCTTTTCCCTAATCTGTTTTATACAATagctttattacagctttcaaGTATTTTTCTAAATGAGTTTGTCTGCGCTGGGAAAAGTCACTTTTAGTTTATTGTggacttaaaaaaaagctaatgacTGCAAGATTGAACTGACATCTAGTGGTCACTAGTGGTAGTAATCACTGCTTGCCGCAAAATAAAGTCGAagcctgttattttttttccttttgacaTATACAAATATGTCCAAGCACACAGATTGATTActagtttttaatgaaattctaCTAACAGTTTTGAAAGTTTTAGTGCTACTGCAATCAACTTTCAAAATTTGCTTTCagcaaatgtgtaattatacatgtaCAGAACCATCTGTTACCTTTATGAATTTTGCAGTATGGTGACTATAGCtgaacatatatacatttacgtATTTACTTTTCATTAGATTAAAGCACTTTGTAAGCTAAAtgctgcatttctttttaaaccagCAAACAGGTAAGCGTATTCACTGATGGTCCCCCTACAAttgatgtaaaaatatacataaacaaatacTTTAGTAGCTATTTACTTTAAGGGAGAAGTGAACAGAATTACTacactgttttaaaaataaatatgcattaaagatatttatagattta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194226 lncRNA downstream 21091 8353533 ~ 8355117 (-) True G131511
TU194223 lncRNA downstream 92767 8283098 ~ 8283441 (-) True G131508
TU194222 lncRNA downstream 93384 8282601 ~ 8282824 (-) True G131507
TU194221 lncRNA downstream 95948 8279994 ~ 8280260 (-) True G131506
TU194216 lncRNA downstream 126981 8248821 ~ 8249227 (-) True G131501
TU194405 lncRNA upstream 128392 8541224 ~ 8555592 (-) False G131654
TU194404 lncRNA upstream 139129 8551961 ~ 8555592 (-) True G131654
TU194433 lncRNA upstream 226596 8639428 ~ 8639657 (-) True G131675
TU194432 lncRNA upstream 245327 8658159 ~ 8659014 (-) False tdp2b
TU194440 lncRNA upstream 311674 8724506 ~ 8775727 (-) False hey1
XM_043218206.1 mRNA downstream 49237 8322649 ~ 8326971 (-) True myclb
XM_043218008.1 mRNA downstream 55307 8287145 ~ 8320901 (-) False trit1
XM_043218007.1 mRNA downstream 55307 8287150 ~ 8320901 (-) False trit1
XM_043218006.1 mRNA downstream 55307 8287152 ~ 8320901 (-) True trit1
XM_043218467.1 mRNA downstream 160225 8197711 ~ 8215983 (-) True hpcal4
XM_043218137.1 mRNA upstream 17849 8430681 ~ 8435138 (-) True rbbp4
XM_043218510.1 mRNA upstream 23459 8436291 ~ 8449744 (-) False bzw2
XM_043218511.1 mRNA upstream 23459 8436291 ~ 8447255 (-) True bzw2
XM_043218142.1 mRNA upstream 144068 8556900 ~ 8559488 (-) True arl4ab
XM_043218572.1 mRNA upstream 148545 8561377 ~ 8569332 (-) True scin
XR_006247071.1 other downstream 55307 8289588 ~ 8320901 (-) False trit1
TU194205 other downstream 55323 8287294 ~ 8320885 (-) False trit1
XR_006247052.1 other downstream 246938 8118949 ~ 8129270 (-) True khdrbs1b
XR_006247051.1 other downstream 246950 8121512 ~ 8129258 (-) False khdrbs1b
TU193992 other downstream 771065 7602133 ~ 7605143 (-) True G131373
XR_006247069.1 other upstream 314427 8727259 ~ 8738786 (-) False si:dkeyp-120h9.1
XR_006247085.1 other upstream 338537 8751369 ~ 8757673 (-) False hey1
TU194713 other upstream 895888 9308720 ~ 9309352 (-) True G131861
XR_006246990.1 other upstream 1247063 9659895 ~ 9664459 (-) True cibar1
TU195128 other upstream 1895126 10307958 ~ 10311928 (-) False elp2

Expression Profile