RNA id: XR_006247023.1


Basic Information

Item Value
RNA id XR_006247023.1
length 3925
RNA type transcript
GC content 0.43
exon number 16
gene id LOC122323556
representative False

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 1657258 ~ 1672784 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCGAACCGACCAATGGGAGGAGAGCTTGTGCTGCCACGTGCGCCTCTGGAGAATGTAAACACACGTGTGTGGAGCTAATGCATGCATTCAGatgaggtcaagtattgctgaaagagAGAGTGAACGTACAGCAGTACTGAACACAACCCTCATCTAACTCCTGGAGAATGGGGACCTTAAAGATCATAACCATCAtccaaactgttgctttaatacaagTTGTGTCACAAGCATATCAGCAATCTGGCTCATGTTACTGGACCAGCAACTCTTCCTTTATAGACGTGGAGGATATTAACCGTCTCTCCTCtcacatctgtctgtctctgggatGTGGCGATGTGTATAAATTAAGGGCATATGATGAAGAATTCAACAGCACCTGTTTCACAGGTTGCCTTTACATTGACTCTGAGCTAAGAAACTGCAGTAATACTGTGAGAAGCCACTGCAAGAAGCTTTCTGAGGTCATTTGTGGTTCTCCCTATGTGGCTCAAATATCTAGCCCATGTACCTGGACTATCAAATCCCCAGACCCAAAATCTTCAGTGTCTCTGCCTGAAGACACTGTCCACAGTGTGTCCCAAGAGATTTGCCGTGAGCTTGGCTGTGGACAGGTCTACAGTCTCAATCAGAACACAGCGGGATTATACACAACTTGTTTTACTAACTGTGTTTATCACAACTATCAGTTGAAGAACTGTAGTGAGGTTAACTCCAAATGCTCAGTCCTTTCTGAAGTTAAATGTGGCAATGCTGCCGTCCGGTTGCAGGGGGGCGGCCATCGCTGCGGGGGCCGTGTGGAGGTGTGGAGGGGCTCCTGGGGAACAGTGTGTGATGATGGATGGGATATAGATGATGCACATGTGGTGTGTGCACAGCTGGGCTGCGGGTATGCTGTGTCTGTCAGCGGGCATGGTGAGCCATACGGCCAGGGCACAGGCGTCATACACATGGATGAGCTCAACTGCACTGGAAAAGAGAGGAGCTTATGGGAATGTCCGGCGATTACAAATGGACATGACTGTGGACATAAGGAGGATGCAGGGGTAGTTTGCTCAGAATACAAGGCTCTGCGACTGACAGGAGGCCTGGACAGATGCTCTGGGAGAGTGGAGGTCCATCGAAATGGTAGCTGGGGGACAGTGTGTGACACATCCTGGCAGAAGGAAGAAGGCGCAATGGCCTGTAAAATGCTGAACTGTGGAGAAGTCAAACAGTTCACAGCCTTTGACCCAGCCTTCAAGCATAAACATGGGTCACTCTGGTATTTTTACTGTTTGAACAAGACCGCAGACCTGTGGCATTGTATTGAATACATTAATGTCTTGCATTTCTGCATGGAAACCAAAGCAGCTGGGCTGATTTGCAATAattctCTTGGTCTGCCTGTTCCCACCAGTCCACAACCAACTTCTGCACTAGCAACCACAGTGACTACTACGATAGTGGACAAACCACCTGGATTCTTCCTGACTTCAGAGCAACTGGGGTGTTTTGTACTTGGTTTCTTGCTTTTGAGTGCAATTATAACAAATATCCTCTTATGTCAtcataataaaaagaacaaagCCGCTGTGGTCCAGAAGAAATATATGAACCTGCAGGCCCAGGCCGAGACAGAGGAAAACAGCTACAGAGATTCTGTGCATCTTGTCAAAGTCACAAACAACAGCAGTGGTGCTGAGGTTCCTGTATCTCCTCAGCGTATCTGGGCTCAAAGTAGCATTGAGAGTGCATCGTATGACACAGATTATGAGCAACATGACATCAGTCCGGAAACAGCTTTTCCTTTGTCCACTTTTCAAAACTCAATGCGATACAGTGCAGATGGTAAAAGGGCTGCTGTGAAGGTCACAAACCTGAACAGTGTGATGGAGGAAGCAGAAACCACAGTGGGAGGATACCAGCAAATCTCTGATCATAATGCACAGCAGATGCATGAATCTGCTACAAGTGTGGACTCGTTTGAGTCTTCCTGCACCTCCTCAGGAGAGTGCTATGAAAACACAGGCACAAATGCCCAGGACCCGTGCTCACAGGAGTCTactgaatgttttgaaaatacagGGGAACAAACCGCAgACACACTTGATGATGTTGAGATCAAGGCTCTATGGGGGGCCATGCCATCACCTCTGGtacttcttgtttttctttacgctgaagatagttctttggctgtatgtttggggtcgttgtcctgctgcagaatacattttgtcatcataCACCTTCCTGTTGGTATTACATGATGGATAAGTACctgcctgtatttctcagcattgagaacaccattaatcctgaccaaatctccaattccattttcagaaatgcagccccaaaTGTTCAACgaacctccaccatgcttcacttttgcctgcagacactcattattgtaccGCTCCCCAGCCATtcgacaaacacaaacacaaactgccttctgctacagccaaatatttaaaattttgactcggcccagagcacctgctgccaATTTTCTGCATCCCAGTTCctatgttttcattttgcataCTTGAGTATGCATACTTAAGCCACATCGAAGGTATGGCTTTTTGGCCGCAACTAGCCAGACTTCTCTGGACAGTAAATGGGTGTACCTGGGTCACACTGGTTTCTGCCAGTTCTGAGCTGATGACACTGCTGGACATCTACTGATTTTAAAGGGTAATAAGCTTGATGTTTCTTCTATCTTCTGCACTAAGTTTCTTTGGCCGACCACTACATCCTCAACGTTTCctgtttctttgtgctttttcaaaagagcttgaacagcacatcttgaaaccccagtctgcttCGATATCTTTACGAAACCCTGTTGCAGTAAaactaccttgtgtcttgttgctgtgctcaatctTGCCACGACATGAAACTATCTTTCACACCCTcaccttggtagcagagtttgGTTGTTCCTCACCCAGGTTTAATcctcctacacagctgtttctgttttatttcatgagTTTCAACCTACATTTGACAATGAGGATCATTAGCACTTATTTGGTATAActggttgatcatacacctgacaATAATCAtacaaaatccctgactttgtgCAAAGACTTAGATGGACTTTAGTTAAATTtctaaacaataacaaaaactgTCCTATAGGGtaaaaagcaaattaaacaataatgtgATAACAAGAAGGCAGGGCCAAGACATGTACTGctcaaggcaaaaaaaatgcactccAGTCCAGCCATGAGAATACAAGAATCAGTAACCACTGAAAACAAAATTGCATAAACAAACAAGGAGCATGAATATCACATCTGTCTCTCTgctatatatacttttttaaaacttggTGACTATTTTTCAGATATGCATCAACACTGAACCTTCAATTTAGAACTTGGTGACTATTTTGACTGAATAGGAAagaagcatatttttttatttctaaagtcCTTTGTAAGATTTGcataatttctgtatttattataatttattatttatttatttagctgttttaggggaaataaatgtacaaaattagtCAACCAAAAGGAGCATAATTTTCTAGGGATTTGCTTGCTGTTCCAATTAATTActctgaaaaacaaagcaaaaaaaaggttacgaatgtttttaaaaagcttagGAAGGTTAAGAGAAAAACTGAGAAAGACTTTAAAGTTGTTGATTGTTGTGTTTCTGGGGACTGTAGATATAAATAacagtttatatattacatatataacaGTTTTCCAAATTTGACTCACAAATGCAGATTTATGGAAGCAGGGATCCGGAAGGTCGTTCCTGGGTCCCACCACAGATCCTTCCTTCAGTTACCAAGAGCTAGATAAAGAGGGTGGCAGCAGAGAGGATTCCCCGTTGTACTCACCCGTCAGCTATGATAATGAAGCAGTCTCTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191594 lncRNA upstream 124293 1532566 ~ 1533005 (+) True G129743
TU191531 lncRNA upstream 390288 1266709 ~ 1267010 (+) True G129701
TU191496 lncRNA upstream 694438 957018 ~ 962860 (+) True G129675
TU191488 lncRNA upstream 838807 818223 ~ 818491 (+) True G129668
XR_006246992.1 lncRNA upstream 918540 723325 ~ 738758 (+) True LOC122323300
TU191670 lncRNA downstream 28247 1700588 ~ 1704532 (+) True G129795
TU191728 lncRNA downstream 197817 1870158 ~ 1965688 (+) False thrb
XR_006247045.1 lncRNA downstream 294399 1966740 ~ 1971792 (+) True LOC122323678
TU191775 lncRNA downstream 384064 2056405 ~ 2056882 (+) True G129881
TU191780 lncRNA downstream 409937 2082278 ~ 2082620 (+) True G129886
XM_043217459.1 mRNA upstream 11877 1626768 ~ 1645421 (+) True ints8
XM_043217460.1 mRNA upstream 11877 1627618 ~ 1645421 (+) False ints8
XM_043217471.1 mRNA upstream 36838 1612813 ~ 1620460 (+) True LOC122323560
XM_043217468.1 mRNA upstream 45344 1606099 ~ 1611954 (+) True LOC122323558
XM_043217469.1 mRNA upstream 45344 1606099 ~ 1611954 (+) False LOC122323558
XM_043217920.1 mRNA downstream 2400 1674741 ~ 1698889 (+) True top2b
XM_043217921.1 mRNA downstream 2400 1674741 ~ 1698889 (+) False top2b
XM_043217922.1 mRNA downstream 2400 1674741 ~ 1697443 (+) False top2b
XM_043217709.1 mRNA downstream 213694 1886035 ~ 1965690 (+) True thrb
XM_043217710.1 mRNA downstream 213694 1886035 ~ 1965690 (+) False thrb
TU191508 other upstream 550725 1072151 ~ 1106573 (+) True G129682
TU191722 other downstream 298351 1970692 ~ 1973384 (+) False LOC122323678
XR_006247126.1 other downstream 657800 2330141 ~ 2330276 (+) True LOC122324256
TU191918 other downstream 1113584 2785925 ~ 2786348 (+) True G129993
TU191942 other downstream 1217348 2889689 ~ 2893492 (+) False serinc2
TU191970 other downstream 1298346 2970687 ~ 2978416 (+) False phactr4a

Expression Profile