RNA id: XM_043217468.1



Basic Information


Item Value
RNA id XM_043217468.1
length 2186
RNA type mRNA
GC content 0.39
exon number 10
gene id LOC122323558
representative True

Chromosome Information


Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 1606099 ~ 1611954 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TAACGTATGAACCTGTGGAACTGGTATCAGTTCAACAGAAGACGTCGGCTAAGGTAGAAACGGTGAGGCTCTGAAGCCTCGACAGGCTTTAAAAATGGGACTTTTCACCGTTTTGTGCTCGGTGTTTCTTCTCGGTGCTGCTGTACCTGCCTGGAGTGAGAAACACACCCTGTACTACATATATACAGCTTTATCCAAACCAGTCGAATTGCCCGGCATCTATCAGTTCACTGCTATGGGTCTGCTAGATGACAGAGAGATTGACTATTACAATAGCCACGGACAGGAAAAGATTCCCAAACAGCCCTGGATGAAGGAGAAAATGGACAATGATTACTGGGTAAAAGGCACCCAGTCCAGAAAGAGTAAAGAACAGTGGTTTAATGTGAACGTTGACATTCTGATGAAACGCATGAGACACAATGATTCTGATGTTCATGTTCTACAGTGGAGACATGGTTGTGAAATTGAGAAACTGGGAGGTGAAGTGAAGTTTTCCAAAGGCATTGATGAATACAGCTATGATGGAGAgaactttttgtcttttgatgaTAAGGAGTCTCAGTGGGTTGCTCCTGTTGATGCAGCTCTTCCAACCAAGAGGAAGTGGGATAATGTGCCCATCCTAAACCAGTACACCAAGGGCTACCTAGAGAAAGAGTGCGTGGACTGGCTTAACAAATTCAGAGACTATGGAGAACAGGAGCTAAGCAAGCACTCTCCTCCAGAAGTTCATGTGTTTGCAATAAAGTGCAAAAGTGACAATACCAAGCTTAAACTCACTTGTCATGCAACTGGTTTCTACCCCAAAGACGTGACACTGCTAATTAGGAAATATCGCACATCTCTGCCTGAGGATGAGATTGATTCCTCAGGAGTCAGACCAAACCATGATGGAACTTTCCAGTGGAGAAAGAGTGTGATTATACTGGAGAATGAAAAAGCAGACTAtgattgttttgtatttcacagAACCCTCAGTAAACCAACCATCAAGGAATGGGATGGAAAATGCCAGGATTGTCTACCAGAGAGTATGCCGGTTATGACTGTAGCTGTGATTGGAGTCTTGCTTATGCTGGTAGTCGTGGCTCTAGTGGTTTCCAtcttaatgaagaaaaaaatcactgCATTCAACTGCAGCAAAAAACCCAGCACCGATGAAGAAAATGTTCAATGTAATCTGCAAGAAGGATCAGGGAATGCTAGTAATAGATCAGACAGCAACACAAGCTCCTCTCAGGTGGAATCAGGACCCAATTCAGTAAAAGCAGTAAGTGAGCGCAATGGTGACTCTGACTCTGGACAAGAGAGTGCTGGTTCATCTCCAGGCAGCAGTCATTGTAACTCTCAGGAGGAAGTGAACCAAGCGAATGAGACTTCAAGCGGTGAAAGTCAAGAGCTTGCAGAAGAACAATCACTTCTAACAAAGCCTTCAGAGTGAGAGCATtacataacttttttaaatggcaGATCTGTGTTATTTTGTTACTGTCAATGCTGACATTTGAGTAATATattgtttctcatttttcatataatctagatttttttaaacaatttgctCAATAGAATTATACTTTCTAGATTATActttccaaaagaaaaagagctgaTCTTTCAGACCTATTATTATTGCTACTTCTAAAGATCCAGAGTAGGGACTTTTTTAccatttgctatttttaaaaccatcattcaaatatttgataGCATTAATACTATTGAAAATAATCCAGagcataatataattataatgatcttattataattatgtgGAAAACTCTGTAAAAATTAGATATTCGTATAAACTCTTAAATGGTGTGCTCTTTAAAAATGGTTAACATTGTGATTTTTCTACCTTGGTTCcacttttgtattattatatttcatttgtacAGGCTTGTACAATGATACAATGCTCACTACAATCAATTTTCATGATATCAAAAAGTGGTATCAATGTGGTATCAAAAAGTGGAATGCCTGCTTGCTGTGTGGGATCTATTTATTCTTTATAAACATGTTGTCACCTGTTGTAAGTAAATTGGGTAGATTACGGCTGTTTCCACTGTCAGAATGGACTGTCTGAATCTGATTTCTAATGTGTTACTTAAGATTTCatggaaataataatacagccttggtttaataaaatcaaactttcaataaaatgttaatctaAA

Function


GO:

id name namespace
GO:0001916 positive regulation of T cell mediated cytotoxicity biological_process
GO:0002474 antigen processing and presentation of peptide antigen via MHC class I biological_process
GO:0042612 MHC class I protein complex cellular_component
GO:0042605 peptide antigen binding molecular_function

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU191594 lncRNA upstream 73094 1532566 ~ 1533005 (+) True G129743
TU191531 lncRNA upstream 339089 1266709 ~ 1267010 (+) True G129701
TU191496 lncRNA upstream 643239 957018 ~ 962860 (+) True G129675
TU191488 lncRNA upstream 787608 818223 ~ 818491 (+) True G129668
XR_006246992.1 lncRNA upstream 867341 723325 ~ 738758 (+) True LOC122323300
TU191670 lncRNA downstream 88634 1700588 ~ 1704532 (+) True G129795
TU191728 lncRNA downstream 258204 1870158 ~ 1965688 (+) False thrb
XR_006247045.1 lncRNA downstream 354786 1966740 ~ 1971792 (+) True LOC122323678
TU191775 lncRNA downstream 444451 2056405 ~ 2056882 (+) True G129881
TU191780 lncRNA downstream 470324 2082278 ~ 2082620 (+) True G129886
XM_043218460.1 mRNA upstream 902 1604392 ~ 1605197 (+) True LOC122324196
XM_043217255.1 mRNA upstream 7779 1593994 ~ 1598320 (+) True LOC122323435
XM_043217256.1 mRNA upstream 7779 1593994 ~ 1598320 (+) False LOC122323435
XM_043218244.1 mRNA upstream 30976 1567958 ~ 1575123 (+) True psmb10
XM_043218440.1 mRNA upstream 347275 1254323 ~ 1258824 (+) True gja4
XM_043217471.1 mRNA downstream 859 1612813 ~ 1620460 (+) True LOC122323560
XM_043217459.1 mRNA downstream 14814 1626768 ~ 1645421 (+) True ints8
XM_043217460.1 mRNA downstream 15664 1627618 ~ 1645421 (+) False ints8
XM_043217462.1 mRNA downstream 45304 1657258 ~ 1672784 (+) False LOC122323556
XM_043217461.1 mRNA downstream 45344 1657298 ~ 1672784 (+) False LOC122323556
TU191508 other upstream 499526 1072151 ~ 1106573 (+) True G129682
XR_006247023.1 other downstream 45344 1657298 ~ 1672341 (+) False LOC122323556
TU191722 other downstream 358738 1970692 ~ 1973384 (+) False LOC122323678
XR_006247126.1 other downstream 718187 2330141 ~ 2330276 (+) True LOC122324256
TU191918 other downstream 1173971 2785925 ~ 2786348 (+) True G129993
TU191942 other downstream 1277735 2889689 ~ 2893492 (+) False serinc2

Expression Profile