RNA id: XM_043217546.1


Basic Information

Item Value
RNA id XM_043217546.1
length 6753
RNA type mRNA
GC content 0.50
exon number 18
gene id jarid2b
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 6061549 ~ 6162543 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AATATATGTCGAttctaaaatgttctgtaaGAATTAGTCCACAGTGATTAAATGTGAATACAGGCCTACTGTTAAGAACTACACCGCGTGCTTCTTTTCCCCCACGTCGAACACAAACATTTCTAGAGAGCAGATGACTATCTTAACAAGGGACGCGGTGAGATTTCGCAACGCTACTCAAAACTGCCTACAAACAAAAAGCGCCTCTGCAAACTGTCCCGAGGCCCCCGTTGAGTTGGAAACCATTCGACGTCTCTTCCCTTTTCGTCCCGAATCGCCCGTTCTTTCGTTCGCCAACTCGGAGGCGTTGTTCGTTTCGGCGTCCCTTCGAGCAGGGTGGTTTCGCGACGCTCCCTAAGGCCGGAGTCCTTTTAAAGTTACCGCTGAGCGTGCTGTCGGGTGTGATAGGCTGCTTAAAGAAAGAAGCTTCGCCTTGTGTTCAGATGAGCCCGTGGTGCTGCTGGAGAGTTCACTCACCGTCTGCTAGCTCCAGCCAAAACGGACCACGAacccttttcctttttttacgttttatttatttcatgctatcCTCAGATACGCCTTTTCAAAACAAGATGTAACTCAACACCGAACATTTGCATCCTCACTTGAATGAACAGGCGCGTTTTAAAGAGCCGGGATGAACATCACTGATGGAAGTTATTGTGGCGAATGGTTTTAACTATGGTATGCCGATGTGATTGTTTATTTTGCCCTTTACCCTCGGCGGCGGATCCCTGATTTTTGGGATTATCGGTAATTCCGCGACTCTGCTAGGAATCGTCGGCGATCGAACGGGGAATTCTGCACGGCCAGGCAAACTACAGGGGATTTAAATCGCATTGCTCcgggagaagaagagagaaaagcagGAAGAAAATTCATGTGGCGATTCTCTCCttaacaataaatcattttttggaTTGCAGAATGAGCAAGGAAAGACCTAAGAGGAATATCATTCAGAAGAAATACGATGATAATGATGGGATGCCCTGGTCGGAGGAGCGGGTGGTGCGGAAGGTGCTCTATCTCTCGCTGAAGGAGTTCAAGAGCGCTCAGAAACGCCAGCTCTGTGACGATCTCAGCAATGGAGGAAAAGGGCCCAATGCTTCCTTGTCAAACGGGCAGCTGAATGGATGTGGGTCTAAAGGAGGACGTAAAGAGAACGGGTCTTGCTCTCAGAGCACAGATGGAAGCAGCGAGTACTCTGAGGACTGCCCGGCCAAAAAGAGGCCCAGACTGCATGCACAGAGGAAGTTTGCTCAGTCTCAACCCAACTCTCCCAGCACCACGCCGGTGAAGATGGCCGACCCCTCTCTGCCCACGCCGCTCACACATGTCACATTCCTCTCCAGTCGCAAGCCCAAGACAGAAGACTTCCTCACATTCATATGCCTTCGAGgcTCACCGGCATTACCCAGTAACATGGCCTACTTCGGCTGCTCTCAGGACGGGGAGGATCTggaagatgaagaggaaatTGAGGAAGAGAAACCACCCAGTGTGGCTTCTACGTCGTGCCAGTCTACACCCAAGAAGGGCAAACCGCATGGCAAGATTAACGGATTCGTGTTGAACGGCCTTAAGGTACACAAGGACAAAGAGCTGGCTCCCAGATCCAGGGGCAGAGAGTCATCCGTGGGGAGAGAGTGTAACGAGGGCTGTGACGCTGCTGAGATCTCCCACAAGCACACTGCAGCCACGGCAAAGAGCCACAACACCAACGGCCACAACTACAGACGAGCCGCAGAAGAGCTCCGCAAGCAGGTCTCGAAAGTAAATGGACTCACACGGGCATCATCAGTCGGCACGCATACAGCCAGTGCCAAAAAGTCGAAAGACTTCCGTCTGCCGTCCAAAACTGTGAAGTACACAGCCACCGTGACCAAGGGCCACGTCACCTACACCAAAGCAAAACGAGAACTGGTTAAGAAAGCCAAACTCAACCACAGCAAGCACGCTTCTTCTGCTGGCCTCCGTGCTTACAGCAACAACCACCTCCATCATTCTCATCATCCAACCAGCAATGGCCATGGCCGGCCCCAGCTCTCTCACTCAGGAAAAGCCCAAAGTATCAATGCAAAAACCCGCAAACAGGTGCTATTATCGAACGGGGTGCATAAGATGACTAATGGGGGCCGGCCTAATGGCAGGCTTAATGGACGCCACAGTGCCagggaagaggaggaagatggCCGACAAGTGCGGCAGGGACTGCGGAACTCTAAACGCAGGAGTGATGCCATTACGATCCTTGGAGCTGGAGCCGAGAGGGACGAAATTAAAACTAAGCCGCCTGTTACTGAGGTTAAGAAAGCTAAACTGCATACTAGCCCACTGGAAACTCGCAGCAAGAAGGCTCTGGGTCAGTTCAAGTCCCCCAACACGATTGCACACAGTATCACTGAAATGGCCGCTTCCCCGACTCAGAAAATGGGTCCTGCCCCTCCTCCTTCACCCCCTGCTGCTCCTGCCTCCCCATCCATGCCCCAGAACCCCGCTACCCCTGAACCAGCACGTCAGAGGCCCAAACGTGCCTCTGCTGGCAAACTGATGTTCATCAGACAAGCACAGCAGAGGGCCCAAACTAACCCCGCCCTCAACCGGACCACATCCACTACCTCAGCCAGCAAATCCTTCAAACCAGCagaccccacacacacacctccacccCGGCCAGACAGAGACAGGGAGCGGGAGAGGAGAAGGGCAGGGTGCGCGGCCCTGGGGGATGTGCCCTTTTTCAAACCCACCTCCAGGGAGTTTCAGGACCCTTTGGTGTACCTCGACTCAGTTCGCGAGCGGGCCGAGTCGTCTGGACTGTGCAGAGTGTTGCCGCCTCCTGACTGGAGGCCAGAGTGCAAACTCAATGACGATATGCGTTTTGTGACACAGGTTCAGCGCATCCACAAGGTGGGTCGGCGCTGGGGCCCCAATGTTCAGAAACTGGCCTGCATTAAGAAGCACCTCAAATCTCAGGGCATCTCGATGGATGAGCCACCGCTTATAGGTGGCTGTGAAGTAGATCTGGCTCGTTTTTCCGAGCTGGTCTGCGACATGGGTGGAATGCAGCAGGTGATGGACCTGAAAAAATGGAGCCGGTTGGCTGACCTGCTTCGCATTCCCAAATCAGCACAGGACCGTCTGGCCAAGCTCCAGGAGGCCTACCTTCAATACCTGCTCTCCTATGACCTGCTCTCCCCAGAGGAGCACCGGCGACTGGAGCAGGAGGTGCTGGCAGAGAAGGAAGCTCTGGAACGCAAGCGGGGACCCCTGGAGGGCCACTCGGATAATGGCCAGCGGTCTCTGGCTCTTCCCCGTTACGAACCCAAGAATGGGCTCACCGGCCTCCACCACCGCAATGGCTTCCGCAATCACAACAAAGAGCCAGACACCCAGCGGCAGGCCGGCCGCCGCAGACTGTTTGCTCAGGAAAAGAAAGGGGAAAAAGTGGACAATGATGAGGCAGATGTGGAGACAGAAGATGAAGGTGTTCTCAGTGACCAGCACAAATGTATATACAAGgGGAGATCGGTATCTTTGACCACCTTTTACAGGATAGCAAGAAATACTATGATGATGTGCTTCAACAAAGAGCCTGGGGCTGCTGAAGTTGAGCAAGATTATTGGCGGATAGTGGAGCAGAGAGACTGCCACGTagcagtgcattatgggaaagtggacacaaacacacatggaaGCGGCTTCCCTGTGGGCAAGTCTGAACCCTTTTCCAAGCATGGATGGAATCTCACTGTCCTTCCCAATAACTCTGGATCCATTCTGCGCCATCTTGGTGCTGTGCCTGGGGTGACTATTCCCTGGCTGAACATCGGCATGGTCTTTTCTACCTCATGCTGGTCACAAGACCAAAACCGCCTTCCATACATTGATTACTTACACACTGGTGCTGATTGCATTTGGTATTCTATTCCTGCTGAGGAAAAGACAAAGCTTGACAAAGTGGTGCACACACTGCTACAAGCCAACGGCACGCCGGGACTGGAAATGCTGGAGAAGAACGTTATGATTTCTCCAGAGGTGCTTTGTCGTGAGGGGATCAAGGTCCACCGCACGGTCCAGCAGAGCGGGCAGTTTGTGGTGGTCTTCCCCGGGGCGTTCGTGTCCAGGGTGTGCTGCGGCTACAGCGTGTCTGAAACTGTGCACTTTGCCACACCACAGTGGATGAACCTGGGCTACGAGGCTGCTAAGGACCTGAAATACAGGCATATAGCAAAACCCTTCTCTATGGAGAAGCTGCTCTACCAGATCGCCACAGCCGAGGCCAAACGAGAAAACAGACTTGTGCTCAGTACAATCTCTTCTCTTCTCAAAGATCTCAGGAACATAGAGATGAAGCAAAGGCAGGATCTGTATGAAGCAGGGCTGCTCTCCTCCGCACGCTACTGCACTCACGACAACAACCAGTCACCCGCTGACACCAGGAAGAAACCCCGCAAGTGGCTGGCGCTGGAGTCGTCCGAGAGACGCTGCCAAACGTGTCAGCACCTCTGCTACTTATCTATGGTGGTGCAGGAGAATGAAAATGTGGTTTTCTGTCTGGAGTGCGCGCTGCAGTATGTGGAGAAACACAAAAGCTGCCGCGGCCTCAAGATGATGTACCGCTATGATGAGGAGCAGATCAACAGTTTGGTGAATCAGGTCTGTGGTAAAGCCCTGGTGAGAAGCCCGGCGGACGGCTGTAACGGCTCCAGCCCCACCAAACCGCCCGCCAAGCGCGGCCCCCGCAAGAGAGCCGGCGTGGAGCTGTCCCTGACCCACCTGTCCAAAAGTGCCGCCGCCGTCTCATGAGGAGCGCCGCCCAGTCCGTGTCCTCTCCCTCTCTTCGTATCGTTCGTGTCTTTTATCACCCACATAGCAGGGCAGAGTTTTCCGTGTTGAAAGCAGGCTGCCTTTTTTGCACTAGCGCACTAGTTTGTATTCACCAGATGTTTGATAGCATTAAGAGACGCGGTCCCAGGCGTGCGTTTCACTGACGGGTGCGAGTCTGACGTCATCTTCTTCTGTCCGGACCCTCTTCCTCCTCGTCCTCGGCCCCCTCGACTGCACACGCGCTCCTCCCGAACTGTGAACCTTGGGACAAATGGGTGCTCCTCTCCCCGTTTCTCCAGACCCCTTTCCTTTGAATGTTGGTGCTCGGTGGAGCTGCCcgagaatgttttattttcgtTTCGTTTTTTGTTCATCGCATCGTTTCGGCGTTTGCTTTTAGCCAAGCGATTTGTTATATTTCGGCTCTTTTTAGTTTTGGCGTTCCGTTTGGCTTCACGGCGACACCTTTTGGTTTCCGTTTGGTCAGCATGCGGAAGACGCGTCTCGAAAGACGGCGAACACTTGAACAATTTTAGCTCGTTTTAATAtcgatttagttttttattcaaGAGGAAGTACGGTGGGTTTTTAGTGCACGCTGTCCTCTGCGGATTCGGGCCGGTTTCCATGGCAGCGGGTCGGGCTGTACTTGAGGAAGTGGGTGTTGGGGAATGAATTAGCGGGTCCTGTCCCGGCGGTGAGGGGCGTCCCTCCCACGCCGACGCTTACGAGCGATACCTGTGCCTGATGTTTAACGGGGAGATCTTTCTTTATTTCggtgctgttgtttttgttttctttttgttttactgtatatcagtgcaaaaaaaaaaaggtaataagaAAGAAGAGCTGCTCGCTGGCCTTCTTATCCCACAGGACGGAAGAGCCCAGAGGCTTTTTCCGCTTCTAGATGTGCAATCGTGTCAACATTCCATTCTTCCAGACTTATTGATTCATCTGTACcagttaacattaattattatataatattattgtaattattatattttgtttctcCTCTTTTGTTTCCGACGTGCTATCTCAATTTAGAGCCACTATTCAGAGGGTGTAAAATgtgaaagttgttttttttttcttcttcgttGTTTCTTTTCGTTccgtcttttttttctttttgcagaaGTATCATCGACTTAAAGAAACTTAAGAAAATCACCTTTTTGTACATAAcctgtaaatgtctttaatacTTGAGCCTTTGTTGGAGTGACGGAAGGAAAGGATAGGTGGATAGATGGACGATGTCAGATGAAGAAAAGCCTTACATTTCAGTTTCTTCAGCTGCGGGAGGTCGATGCGTACAGGGTCGCTCTGGTAATGTGTATAAATTTTAAGTGCTGCTTACATCACTGAGGACTAAGAGAACGGAGTCGCGATTTGCccctagttttgttttttaggtttacttttttaaagaaaagggaaaatactttcacaaaaaaaaacaaaaaaaaaaaaaaggtttttacattttcattactgaAAATTCAACATTGTAGTAGCTACTCATGTTGCACTGAGCTTGCCAGTGGTGACtgtcaaggaaaaaaaaaaaaaactataatccAGTTTGTTGGTTGTCGTCCTTAACAGAAGACTGAACTGTTTTAGGAGTATTTAATGAAAACCAAGTCAGGTGTTTTCAACAAAACGGCGGTTGTCAAGTTTTTATGGCCTTAGgatgtattttattcagaaattgtGTTGTTTCTGTTCCTTTTTCTACAATATGAGAGATCTGCTCACGGTCAGGCGAGTTAATTTATTAGCTTTTCCTCTCTTGAGGAAAGATTTCATGTTGGTTATATTGCCaggtttattttggtttttcttttggttttttactttttcaatttGTACTTAAGGTTTAATAAAAACTCATGGACAATTCGC

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0031061 negative regulation of histone methylation biological_process
GO:0048863 stem cell differentiation biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0051574 positive regulation of histone H3-K9 methylation biological_process
GO:0035098 ESC/E(Z) complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0032452 histone demethylase activity molecular_function

KEGG:

id description
K11478 JARID2, JMJ; protein Jumonji

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193275 lncRNA upstream 108079 5923032 ~ 5953470 (+) True G130893
TU193281 lncRNA upstream 126832 5798511 ~ 5934717 (+) True G130899
TU193272 lncRNA upstream 128707 5930852 ~ 5932842 (+) True G130891
TU193270 lncRNA upstream 128757 5930852 ~ 5932792 (+) False G130891
TU193271 lncRNA upstream 128757 5930852 ~ 5932792 (+) False G130891
TU193325 lncRNA downstream 5083 6167626 ~ 6169359 (+) True G130940
TU193329 lncRNA downstream 65203 6227746 ~ 6228087 (+) True G130944
XR_006247115.1 lncRNA downstream 92463 6255006 ~ 6263954 (+) True LOC122324219
TU193336 lncRNA downstream 169122 6331665 ~ 6334244 (+) True G130950
TU193412 lncRNA downstream 209292 6371835 ~ 6401298 (+) True pdia8
XM_043217189.1 mRNA upstream 178575 5876054 ~ 5882974 (+) True LOC122323385
XM_043217190.1 mRNA upstream 180397 5876050 ~ 5881152 (+) False LOC122323385
XM_043218135.1 mRNA upstream 273756 5785131 ~ 5787793 (+) False LOC122323983
XM_043216946.1 mRNA upstream 308632 5745830 ~ 5752917 (+) False LOC122323254
XM_043218150.1 mRNA upstream 322364 5725368 ~ 5739185 (+) True col28a1a
XM_043217804.1 mRNA downstream 71482 6234025 ~ 6252339 (+) True mylipa
XM_043218022.1 mRNA downstream 103840 6266383 ~ 6344260 (+) True npr1a
XM_043218095.1 mRNA downstream 184246 6346789 ~ 6361192 (+) True ints3
XM_043218448.1 mRNA downstream 202975 6365518 ~ 6377599 (+) False gon4la
XM_043218447.1 mRNA downstream 203013 6365556 ~ 6377599 (+) True gon4la
TU193273 other upstream 138576 5785130 ~ 5922973 (+) False LOC122323983
XR_006246984.1 other upstream 308767 5745801 ~ 5752782 (+) True LOC122323254
XR_006247105.1 other upstream 475894 5583505 ~ 5585655 (+) False LOC122324139
TU192862 other upstream 747371 5223700 ~ 5314178 (+) True G130640
TU192863 other upstream 747371 5223700 ~ 5314178 (+) False G130640
TU193467 other downstream 300540 6463083 ~ 6488760 (+) True G131047
TU193457 other downstream 357377 6519920 ~ 6526080 (+) True G131042
TU193617 other downstream 529431 6691974 ~ 6695456 (+) False ppp1r11
TU193614 other downstream 529523 6692066 ~ 6696204 (+) True ppp1r11
TU193616 other downstream 529523 6692066 ~ 6695456 (+) False ppp1r11

Expression Profile