RNA id: XM_043217551.1


Basic Information

Item Value
RNA id XM_043217551.1
length 7556
RNA type mRNA
GC content 0.45
exon number 24
gene id gabbr1b
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 6519866 ~ 6625054 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atatatatatatatattttttccgaTTGTTAACATTCGACTGTTATTTTATCGCGCGgatatttaaaagcaattgtGCGAGGTTATTCTCGCACGCAAGCGACGCACGCAATACCAATCGTACGAGAGCAATTTCACGCGCACGGAGGCAGTCGAAGTTTAACGCGAGGCTGCGCGTAGTGAACGCCTGGCGCGAGCAATTAAAAGAGCGTATTTATTTACCTGTCGTCTTACTAGTACGCACACGCGCGCACGCGTTGGCTACATCAAGCATCCCTCGAGGACCATCTCCACAGACCGTTCCCAAAAGAGCCTGCACGACGCAGTGGAAGAATGGCCCTCTTGTTGATTGTGTCGCTTCTCCTCGGGTCTTTTTCCCTCGCCGTGGCCTCACGCAATACGACCGCAGgttgtGCAATCATTCGCCCACCGAGAGATGGAGGAATCAGATACAGGGGTCTGACACAGGAACAGATCCGCAGCGTTCAGGTGTTGCCGGTGGATTATGAAATCGAGTATATCTGCAGAGGAAACCGAGTGATCGTGGGACCGAAGGTCAGGAAGTGTCTCCCTGACGGCACATGGACCGATCTGAACCAGCGCAGCAAATGCTTGCTGCCGTGCGCGCGGGTCTGGACGTCTCTGGAGAACGGCCGTGTGACGGTTCACCCTCCAGGCCCTGCGGTGGAGGGCACCATACTGCACTACAGCTGTCTGGAGGGGTTCATCCTGGTGGGAAGAAACAGCACTCAGTGCACTAAACTGGGCAAGTGGGACTCACCCAAACCTGTCTGCCACTATGACAGACATTACACAGGCAAGAAGAAGCTCTACATCGGAGCCCTGTTCCCGATGAGCGGCGGATGGCCGGGTGGCCAGGCTTGCCTCCCTTCTGCCCAAATGGCCCTGGATCTGGTGAACAAGAGAACGGATATTCTTCCGGATTATGAGCTTGAATTAATCTACTATGACAGTATGTGTGATCCCGGCGAGGCCACGAAGCTGCTGTATGACTTGCTGTACACGGAGCCCATAAAGATCGTCCTGATGCCAGGCTGCAGCTCTGTGTCCACGCTGGTGGCCGAAGCGGCACGCATGTGGAACCTCATAGTGTTGTCCTACGGATCCAGTTCACCAGCACTCTCCAACCGCCAGCGCTTCCCCACCTTCTTCCGCACGCATCCCTCAGCCACTTTGCACAACCCCACCCGTGTACAACTCTTCCAGAAGTGGAAGTGGACCAAAATCGCCACCATCCAGCAGACCACCGAAGTCTTCACCTCTaCTCTGGATGATCTAGAGCAGAGGGTGAAGGAGGCAGGCATTGAGATCAGCGTGAGGCAAAGTTTCCTCACGGATCCTGCTGTGGCCGTCAAGAACCTCAAGCGGCAAGATGCTCGCATCATTGTGGGCCTGTTTTACGAAACGGAAGCCAGAAAAGTGTTTTGTGAGGTCTATAAGGAGAAGCTGTATGGGAAAAAGTATGTgtggtttctgattggctggtatGCTGACAACTGGTTCAAGATCAAAGACCCATCCATCAACTGCACTGTGGAGCAAATGACAGAAGCTGTGGAGGGTCATGTGACCACTGAGATAGTCATGCTCAATCCAGAGACTGTGCGAGGGGCCTCTAACCTGACCTCGCAGGAGTTCCTAGCGCAGCTGATGTCCAAGCTGGGGGGGAAGAATCCAGAGGAAACCGGAGGGTTTCAGGAAGCTCCTCTGGCGTATGATGCAGTTTGGGCTCTGGCTTTGGCTCTCAATAAGACAGTGGGGCCTCTGAAGGCAAAAGGACGGAGATTGGaagattttaattacaataacaaGGACATTACTGCGGAGATCTACCGAGCCCTCAACACCAGCTCATTCGAGGGGGTTTCGgGTCATGTGGTGTTTGATGCCCAGGGTTCCAGAATGGCATGGACCCTCATCGAACAGCTGCAAGGAGGAAGCTACAAGAAGATTGGATACTACGATATGACCAAAGGCAATCTCTCTTGGTATGGGAATGACAGGTGGATAGGCTCCGGTCCACCTGCTGACCAGACGGTGGTGATTCAGAAGTTCAGATATCTGTCACAAAAACTCTTCGTCTCTGTGTCTGTTTTCGCTGGCTTGGGCattttaatgggcatcgtttgcCTCACctttaacatctacaacagcAACGTCAGGTACATTCAAAACTCCCAGCCGTACCTGAATAACATGACGGCAGTGGGCTGTATGATGGCTCTGGCTGCTGTTTTTCCTTTGGGAATTGACGGGCTGCATGTACGCAACTCTCAGTTTCCTGTGGTCTGTCAGTTTCGTTTGTGGCTGCTTGGACTTGGCTTCAGTTTGGCTTATGGAAGTATGTTCACAAAGATCTGGTGGGTTCACACGGTCTTCACAAAGAAGGACGAGAAGAAAGACAAGAGAAAGCAGCACCTGGAGCCCTGGAAGCTCTACGCCACGGTGGGAGTCCTGCTGGTCATCGACATCCTGTCCCTTATGATCTGGCAGATCGTGGATCCCCTGCACATCACAGTGGAGAAGTTCACTAAAGAAGCACCTAAAGGGGACGTGGATCAGCTGATCGAGCCTCTTCTGCAGCACTGCAGTTCAGAGAAGATGAACACATGGCTTGGTGTCGTTTATGGCTATAAGGGTTTGCTGCTGCTTCTGGGAATTTTTCTGGCTTACGAAACCAAATCTGTGTCCACTGAAAAAATAAACGATCATCGAGCTGTTGGGATGGCCATCTACAACGTCTCGGTGCTGTGTATGATAACGGCTCCCGTCACCATGATCCTGTCATCTAAGCAGGACGCCTCGTTCGCCTTCGCCTCGCTGGCCATCATCTTCTCCGTCTACATCACTCTGGTCGTCCTCTTCGTCCCCAAGATGCGGAGGCTTATCACTCGTGGTGAGTGGCAGTCGGACCAGCAGGAGACCATGAAGACCGGCTCATCCACAAACAACAACGATGAAGAGAAATCCCGCCAGCTGGAGAGGGAAAATAAAGAGCTGCAGAAGATCATCCAGGAGAAAGAGGAACGAGTGTCAGAGCTGAGAAACCAGCTGTCAGAGCGACAGGCCCTGCGCTCCAGGAAACGGCCCACCTCCTCCAATCAGAACCACAGCTCTCCATCTCTCCCCACTCCTCAGAACGATCCCAAATCTCTCCTCCCGCCACCAGGATACCCCCTCCCTGCCTCCGACAACCACTCCCTCCCTCCCACCTTCTCCAACTCCTCCACCCTCTACCAGCCAGACGGCAAGATCAACCGCAACAACTGCCACCCCGGCCGACTGCAGCTCCTCTACAAGTGAGTCTGGAGGACGCGGGGTCGAACACAAGCGGTGTGCGGCGAACTGAAAGGGGAGGGAGAAAAACAAGCTACCTTGATTCGCGGCCCACAGTTTTCCCCATCTCCGCCCAGCAGAcggccttgttttttttttcttttgtttccgACACTTGCTGTGACTCATGGGAGGTCATACACAGGAGGCGTGAGAATCTGGTTTTGATTGCATCACTCGATGTGTCACCGTATTTGAACGTCACACATGCTATCAACCATTTCGTCGTTCAAATGAGTAATCCTCAGCTGATTTTGACTCGGAAAATTGCGGACGAATGATGACATGCTAAAAATGTCCAAACAAAAACATCGTTATTCccttaaaatactattttttcgATTGCAATACCACAATTTTTCAATAcgtttgtgcttttgttttgttcatatttcCTACAGTTCAATCAGGATGAATGAATATAAGCCATGACACACCAAACATCGGGCCATCGTATCTGATTGTTTTTTCGGTGTGTGTTCAGCACCATTGGCGCTAGTTAGACACCGTCGGTGGCTTTTTGGCCTGTTGAGCATGttgagctctgattggctgttcgCTTTAACAAACAAGTGCATGAGAAAAAAAGCGAAAGGCATGACTGCAAGCAAAGAAATCAAGACTGAATATCCAATAACTAAATATTCTCTGGAATTAAAGAAAACCATGATTCATATCTGAAATGGCTTTATGGATTGTATATATGCAGTCTTAGTTCTGGTTTCCCTTTCTGAATGACGAATACAGACTATTGATACATGGGGTCACTTTCTCTCATGTAGGCACAGAATGTACCTGCTGGCTGCTTTTAGGTCCAAACGGCAACAACAGTCAACTTTCACTGCTGCTAGTTTGGTTTGGTGTGTCAAGGCCTTAAAGGggaagttcacccaaaaatgaaaacgtattCACGTCATTAATTACCCACCTACCTGTAGGTCCTTCATTAATCCATGTctcatggactattttaacaatgtctttacaTTCTTTCGGGGCTTTGAAAATGTTGGTTCCCTCGCTgtttatggagggtcagaaatcTCTCAGATTTcgttaaagtattttattttgtgttccgtAGATGAATGAAAGTCTTGTGAGTTTGCGCGGGTGAGTAATTCATGACCTAACCCTTAAAATCTGAACTCTGAAACTGCTTTGTGttcacacacatattttgtgcGGTGTCAATCACATTTTGATATCATGACATACTGAACTGCAATATATCTGTTGCAATATGTACCATATAGTGAAGATTGCCGTTGCCGTTTTCATTACAGTCTGCCAGGTGCTTAATATGCAATCGTGAGTCAGTGTGGTAACAACATggaacattttttacatttacatttattcatctggcagatgcttttatccagtGCATTTTACAGTGCGTctaaagtttacattttatcagtatGTGTTCCCTGGGAGTCGAACCCTTGATCTTAGTGTTGCTGGTGTCATACTTGAACTGCGTTTGACTTCTGACTACTTCATATCATGTTGTTTATCAACcgattttcaaattttcaacaTGAACTCATAAACATTCTTTCACAGCTGACAGTATTATGAAATGTCTTGTGACCAATGAACAACCGATTTataatttcctgtttttttagCCCATTATCTCATTTGAAACTCACTTTTAAGGGATTCCTGTCTTACATCACAGATGTGATACCTCAGATCATCTAGTTTGCCGAAGAGAAGTGTGCTATTGCTCTATAGACTTGTGATTTTCAGCAGGCAGGTGTAAAAATCCCATAAATCTCCACTGATGGAAGGACACTTTTGTAAGAAACCCACCGGAATACCTTAGCAACTTCATAGCAACATCCTGccattttaatgtgatttttgcaTGGACAAAAATCACTCATAATttctttatcaaaaaaaaactaGCTTCGCAATAAGCTGCAATGATGTAATGAAATGATGTTGGTTTGCTTATAGCCAGCTTTTCTCCCAGAGCATGCTGGGATAATATATTAACAGTCACAAGCTGTTGAAGGCGTTTGAAGTCTTTGTACAGAGGAGACGTAATTTCATCACAGATTTGggggttttgtttttattagatcCCCCTTGTCACTGAAAGCCACAGATTGAATCTTCCAGCAACGTAATGCATTTTGCTTCTAAATGGTACCTGCCATATTGACAGCATCACAGGATGCTGCTACTTTGCAATGCAGATAACATTAAAAGTGCATCGTGGAACCATTTTTATCGTGTGTTTGGTACACGGCAGTGAAAAGAGGTTAGCTGAGATTAGTTGAGCGTGCAGTACGGTACTTTACCTGGTCGTGCACATTCACACGCTCGTCAGCTGCTTAAACCACGTTACGTTCCTGGTTTATTCGAAAAAATGAAACCTTACTGTACAGTACAGAACATGATTTCTAAACCCGATTCTTTGTCTCCTCGTCATGAATAAAACAACCAGTGTCCTGTCTGCAGCGCCCCCTAAATGACAGTCTTCAATGGCAGCTTTTCCCACAGCTGTGCGTTTGTTTGACCCTCCTCAACTCTTGCTTTATCTCGCTGTGGATTCATCGGCAGGCCTGTATAGCAAAGTTTGCTTTGTTTCAGCTGGACTATAAATGGTTTGTGTCGTCTGCCTCATTTCCTCCTTTGAGGTGGCAAAGTCCCTCTCTCATTTGGAGGGATGTgatgtacagaaagaaaaacccTACAGGGACTATGAGAGTCATTTGTCTATTCATAAGTGCTTATGACAATAGCACATTGCTCACTATTTTTGAGAACTGTTAATACCTCATAATATTTGGAATGTTGCTGCTGGTTTTCTAAAACATATATAGGCTGTGTTTGGAATCGCACGCTAGTATACTACCCTTAGTGTAGTGTATAGTATGTATGGGTGCAGTACGAGGCAATGAAATCTCTCAAACCGCGACGGAttgaaacaaagtaaaaatcCTGGTCATTCTCTTTATAGGGAAAGCAGTTGTTTAATAGTAACTTACTCTGAGCTACGAGGTTGATCGTCTTTTATTGAAGCCATAATGTGAATATGAAGCCcaaatttaaaaccattttttcttGTAGTCATGCTTAAAAGTGGAATTCCTCGTGAAAACctacattacccataattcTGAGAATCTCTACCAAtcagaaaattacaaaaaatctCATGAAGCTCTGCAAATGATTTAGAGTCGGTTTCCCTGCACTGTTAAACTGCTTATATGTTTGTATGcataatatgcacattttgcaataaaagaaatatattgtttctatATCAACAGTCTATATTTCTCGCTTTTGTCGCATTTGTCATTTGCAATGCTTCATGGGATTGTAGTTCTTTCCCATTGTTGTACCTTTGTCTTTTTGTCCAATTTtctaatacttttttatattgttgaaAAATTTTGTGATTCATCTCGTAGCTGGTTGGTTTGGTTCAtggctttaaaataatacttttttaactcactatagaaaaatgtatttgaagaaATACTCCCAGAACCAATAAAGTCGCGTTTGCATTATAAACcagcattaaataatattaagcacCCAAAAGTTACTTTTTAGCCACATTTTTTAACTAGGCcttataaaatgcatatcaaCTGTATTTTATCAAATGATAACTGGATGCAATTTACAGTTTGATGGAAAATGAGACAGAATACAGTATACACTGGCAGTATTGTACTATATATACTGTGTTACGGTATGCTAGCATTCCATTCTGAACACAGATAGAGATCGAACTGCATTGTGATGTCATCCAATTGGTTTGTCATAAGCGCTTGTGATTGGCTAAATGGTGCTCTGATGATTTACACTGATCCAAGATGACTCTCCAGGAATCCTGGGGAGGATGTCGTGAACACGAGGACAAACCCCACCATGGTGTTTATTATCGGCctactgtaatattttattcatcatttcTTGTCAAATGGTGGTTCAATAATAATCATGATAGTGATGATATGCACAAATGTTAATTGTGTAAATGCTAAATGTACATGATAAATGTATTCTCTTGCACAAAGTATGAAGTATATAAAGTCAAAGGTATTCGTATGTggtattgaaaatatatttgtatttgtactaTGATAGATTCTGTACAACGCTATTGGACTGGTGTCTATGgtgaaataaatgtagtttttgctacatttttttaaa

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0035095 behavioral response to nicotine biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004965 G protein-coupled GABA receptor activity molecular_function

KEGG:

id description
K04615 GABBR; gamma-aminobutyric acid type B receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193555 lncRNA downstream 79784 6438205 ~ 6440082 (-) True G131114
TU193399 lncRNA downstream 164391 6354956 ~ 6355475 (-) True G130999
TU193381 lncRNA downstream 226600 6248351 ~ 6293266 (-) True G130982
TU193376 lncRNA downstream 283589 6234044 ~ 6236277 (-) True G130978
TU193371 lncRNA downstream 321505 6198125 ~ 6198361 (-) True G130973
TU193661 lncRNA upstream 72287 6693892 ~ 6701605 (-) True G131153
TU193666 lncRNA upstream 72287 6693892 ~ 6701605 (-) False G131153
TU193656 lncRNA upstream 80719 6702324 ~ 6704443 (-) False G131153
TU193657 lncRNA upstream 80719 6702324 ~ 6704443 (-) False G131153
XR_006247006.1 lncRNA upstream 80878 6702483 ~ 6707103 (-) False LOC122323439
XM_043217039.1 mRNA downstream 11436 6494491 ~ 6508430 (-) False sacm1la
XM_043217040.1 mRNA downstream 16112 6494491 ~ 6503754 (-) True sacm1la
XM_043217042.1 mRNA downstream 25670 6485917 ~ 6494196 (-) True LOC122323303
XM_043217041.1 mRNA downstream 26120 6485917 ~ 6493746 (-) False LOC122323303
XM_043217043.1 mRNA downstream 35767 6478516 ~ 6484099 (-) False LOC122323305
XM_043217560.1 mRNA upstream 5993 6627598 ~ 6639059 (-) True sh3bp5lb
XM_043217557.1 mRNA upstream 18404 6640009 ~ 6648242 (-) True gtf2h4
XM_043217561.1 mRNA upstream 26785 6648390 ~ 6649205 (-) False polr1h
XM_043217553.1 mRNA upstream 39207 6660812 ~ 6670386 (-) True mgat1b
XM_043217555.1 mRNA upstream 39207 6660812 ~ 6669931 (-) False mgat1b
TU193406 other downstream 156694 6362347 ~ 6363172 (-) True G131006
XR_006247124.1 other downstream 1114648 5405086 ~ 5405218 (-) False LOC122324254
XR_006247125.1 other downstream 1114966 5404769 ~ 5404900 (-) True LOC122324255
TU193049 other downstream 1259702 5141505 ~ 5260164 (-) False G130744
TU193577 other upstream 9584 6631189 ~ 6639220 (-) False sh3bp5lb
TU193649 other upstream 26833 6648438 ~ 6649389 (-) True polr1h
XR_006247130.1 other upstream 81718 6703323 ~ 6703389 (-) True LOC122324260
XR_006247131.1 other upstream 82266 6703871 ~ 6703937 (-) True LOC122324261
TU193894 other upstream 735016 7356621 ~ 7360111 (-) True LOC122323893

Expression Profile