RNA id: XM_043217553.1


Basic Information

Item Value
RNA id XM_043217553.1
length 2326
RNA type mRNA
GC content 0.51
exon number 3
gene id mgat1b
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 6660812 ~ 6670386 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGCGAAGGGGGCGGGTCCTACTTAATGAGTCAATCCGGAAGTGGGGAATCGCTCTGCctgtacgcacacacacacacagacacacagagcgGCAGCGGCGTCAAATCAAGCCCTCGGTCAGCGCGTAACTGTAAATACAGCCGTTAAAACAAGCGTCCGGAACCGCGCGCTCTCACTTCGCCAGCCGATATCGCCGCAGACAGCACCGGATGTGAACCGCGGGCACACACGGGGAGAGAGGGAAATGGGCGACAGCTGCAGGAATGGAGAGAGTCGAGTATTGACAGCAGCGCCGGGCGAAGGCGACCGACGGTGATGGAGATGAAGAGCGAAAAGTGAAGCTCTCGTTCTGACGGTCTGCATCTCGTCGGTCACGGCCATCTCGCTGTTTAACCCCGTCCTGTCCGGAGATGATGAAAGCATTTTCCTCCCTGCGGTCCCTTGTGTGGTGTCACTGGACCATGGTTCGCAAGAAAGGATCTCTTATATTGTGTGGAGCATTTCTATTTGTTGCCTGGAACGCCTTGCTGCTGCTCTTCTTATGGGGAAGGCCTCCCATTGGCCGACTTGGTGAGGGAGGCGGAGCTGAACCAGGGGCTGGAGAGGAGTGGGGAGGCGGAAAAGCAAAAGTGGGTGGAGCTAATGGATTGGCTGGCGAAGTGATCAGATTGGCCGAAGAAGTAGAATCAGAACTGGAGACTCAGAAGAAGCTTCTCAAACAGATACAGAGTCACAGGGAACTATGGGAACAGCGGAAAGAACTCGGAAAGAGGGAATCCGAGGACATAAAAAAAGACGAAAAGAACGTTGAGGAGCCTAAGAAACCTCAGCAGATTCCGGCAATACCTATAAGTCAAAAAATTGTAGATGAAGCAAAAATTGTTACAGAAAAACATGAGGTTCTAATAGTTACGCCACCTAAGCTGGTCatgaaggagcaggagaaggaGCAGGAACAGGAACAAGAGGACAAGAAAATGGCAGAAAATGAAGAAGGCCATACTAAACCAAGCCCTCAAATCATTATCCCAATTCTCGTCATTGCCTGTGACAGAGTAACGGTGAAGAGAAGTTTGGATAAACTCATACAGTACCGTCCTTCTGCTGAGCTTCACCCAATCATTGTCAGCCAGGACTGTGGTCATGCAGATACGGCAAGGGTGATTGGCTCCTATGGCAGTCAGATAACCCACATTAGCCAACCGGATCTTGCGGACATTCCAGTGCGACCCGATCACAGGAAGTTCCAGGGTTACTACAAGATCGCCAGGCACTACCGTTGGGCCCTGAACCAAGTGTTCAACGTCTTTGCTTACTCCACAGTGGTCATTGTGGAGGATGACCTGGAGGTGGCCCCAGACTTTTTTGAGTATTTCCGCGCGCTCTACCCCATCTTGCGATCGGATCCTAGTCTGTGGTGCATTTCTGCCTGGAATGATAACGGACGGGATGGGTTGGTCGACCCAGGCAGAGCTGACCTCCTTTACCGGACAGATTTCTTCCCCGGCCTCGGATGGATGCTTTTAAAGGAAGTCTGGGCAGAGCTGGAGCCCAAGTGGCCCAAGGCATTCTGGGACGACTGGATGCGGCACCCAGAGCAGCGGAAGGACCGCTCATGCATTCGTCCTGAGATCTCCAGGACTATAACGTTCGGGCGAAAAGGCGTCAGTTTGGGTCAATTTTTCGACCAGTATCTGCGCTACATAAAACTCAATACTGAATTCGTGCCTTTCACTAATCTGGACTTGTCCTACTTGGTCAGGGAGAAGTACGATGAAATCTTTGAAAAGGAAGTGTATAGCGCCCCCTTGGTGAAGGTGGAGGAACTGCAGCAGGGCGGGAGTCTGAAAGGCTCTGGGCCGTTTCGAGTTCAGTACTCAAGCAGAGACAGCTTTAAAGTGCTGGCCCGCAACTTGGGGGTTATGGATGATTTGAAGTCAGGGGTTCCCCGTGCCGGTTACAGGGGTGTAGTCAGCTTTATTTCCCGCGGACGAAGAATTTATCTGGCTCCCCCTCAGGGCTGGATTAAATATGACACCAGCTGGAGCTGAGGAGGATGAGCTTTGGACCACAATAGACCAGAAAGAGAAAACTCACAACTATTATTAAAAGTACAGGAGGAGAGAAACGCCCTCTCAAACCAAAGAAAACAGAGGCAGGGTGTGAAAGTTTGAGGACAGGTTAACACTAAGATGTGAGTATAAAATAACTGCTGTTTTGCTATGGAGGAACACCCAGGAATGCTGGGAACAGCACAAAAGTTGGTGCATCGTATTTGCGCAGCAATCATGCAACAATCTTCTCTCAGAGAAAACAGAGTTACGC

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0000139 Golgi membrane cellular_component
GO:0008375 acetylglucosaminyltransferase activity molecular_function

KEGG:

id description
K00726 MGAT1; alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193555 lncRNA downstream 220730 6438205 ~ 6440082 (-) True G131114
TU193399 lncRNA downstream 305337 6354956 ~ 6355475 (-) True G130999
TU193381 lncRNA downstream 367546 6248351 ~ 6293266 (-) True G130982
TU193376 lncRNA downstream 424535 6234044 ~ 6236277 (-) True G130978
TU193371 lncRNA downstream 462451 6198125 ~ 6198361 (-) True G130973
TU193661 lncRNA upstream 23506 6693892 ~ 6701605 (-) True G131153
TU193666 lncRNA upstream 23506 6693892 ~ 6701605 (-) False G131153
TU193656 lncRNA upstream 31938 6702324 ~ 6704443 (-) False G131153
TU193657 lncRNA upstream 31938 6702324 ~ 6704443 (-) False G131153
XR_006247006.1 lncRNA upstream 32097 6702483 ~ 6707103 (-) False LOC122323439
XM_043217561.1 mRNA downstream 11607 6648390 ~ 6649205 (-) False polr1h
XM_043217557.1 mRNA downstream 12570 6640009 ~ 6648242 (-) True gtf2h4
XM_043217560.1 mRNA downstream 21753 6627598 ~ 6639059 (-) True sh3bp5lb
XM_043217550.1 mRNA downstream 35758 6519866 ~ 6625054 (-) False gabbr1b
XM_043217376.1 mRNA upstream 2153 6672539 ~ 6696368 (-) True vars2
XM_043217377.1 mRNA upstream 2153 6672539 ~ 6696366 (-) False vars2
XM_043217378.1 mRNA upstream 2153 6672539 ~ 6691993 (-) False vars2
XM_043217379.1 mRNA upstream 2153 6672539 ~ 6691800 (-) False vars2
XM_043217381.1 mRNA upstream 2153 6672539 ~ 6691543 (-) False vars2
TU193649 other downstream 11423 6648438 ~ 6649389 (-) True polr1h
TU193577 other downstream 21592 6631189 ~ 6639220 (-) False sh3bp5lb
TU193406 other downstream 297640 6362347 ~ 6363172 (-) True G131006
XR_006247124.1 other downstream 1255594 5405086 ~ 5405218 (-) False LOC122324254
XR_006247125.1 other downstream 1255912 5404769 ~ 5404900 (-) True LOC122324255
XR_006247130.1 other upstream 32937 6703323 ~ 6703389 (-) True LOC122324260
XR_006247131.1 other upstream 33485 6703871 ~ 6703937 (-) True LOC122324261
TU193894 other upstream 686235 7356621 ~ 7360111 (-) True LOC122323893
TU193918 other upstream 724794 7395180 ~ 7397946 (-) True LOC122324169
TU193992 other upstream 931747 7602133 ~ 7605143 (-) True G131373

Expression Profile