RNA id: XM_043217583.1


Basic Information

Item Value
RNA id XM_043217583.1
length 4557
RNA type mRNA
GC content 0.51
exon number 24
gene id bag6l
representative False

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 8182020 ~ 8195819 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTTGGCTAGCATGTCCCTATAGCTGTTGTGGGggataaaattataattaaacactAAATCGCTGAACTGCCACGCTTATCCCTTAAAAatcctCTGGAGTCATGGAGGAACCAGGAGCCATAGAGGTGACAGTGAAAACTCTGGATTCTCAGAGCAGGACGTTCACTGTCAGGGgagagTGGACTGTGAAGCAGTTTAAAGCGCACATCGCTTCCGCCGTCGAAATCCCGGTGGATAAGCAGAGGTTGATCTACCAGGGTAAAGTGCTGCAGGACGAAAGGACACTCGCAGAATACAATGTTGATGGAAAGGTCATTCATCTTGTGGAGCGAGCACCTCCTCAGAGCAGTCAGTCTGggggtggaggaggtggagTTTCTGGCCCTTCGGGTGCAACGGATGGAGGATCCAGCTCTTCTCAATCCTCTACTTTTCCAGGAACTCCACATGACCGTAATGCCAACAACTACGTAATGCTGGGCACTTTTAACCTGCCTGTGAACATCATGGACCCACAGCAAATACAGATGTCAGTGCAGCAGATGCTGGCTGGTGTTGGAGAAATGGGGCGCAATGTCAGAGTGAGCACCAGCACAGGAAGCAGTGGCTCTGTGGATGTCCATATCAACGTGGACCAATCAGTGCAGAGCGAGCCCAGGATGAGGCTTCAGCTGGCTGAAAGCTTGCTGCGAGAGACACAGGCTTTAATCCACAGGCTTGAGggtcaGCCAAGTGAACCGTCATCTCAGCAAGAGACACCACATCCTcagccatcatcatcatcattttcagCACAGCCAATGGAGAGCTCCCCACCTCCaccctcctcctcatcctcatcctcagcTTCACAGACAGGAGCAACTCACTCTGGACCCAATCACCCCAGCCCTTTAGAGCTGGTGGAGGTTCTGTCAGAGGTACGAAGGGTGGAGGAGCGTCTCCGTCCGTTCATGGAAAGAACACATTCCATCCTTGGAGCAGCCAGTTCCGCTGACTACAATAACAATATTCAAGAGCGAGAGGAAGATCAGCGTACTCTCAATTTGATTGGAGAGTCACTCCATCTCCTTGGCAACACCTTGGTGGCTCTGAGTGACCTCCGATGCAATTTATCAGCTCAGCCGCCCCGCCACTTACATGTGGTGCGGCCCATGTCTCACTACACCTCCCCTGTTGTGCTGCAGAGTGGACCGTCTCATATTCCCATTCCGATGAACCTGGGCTCCACTGTGACCATGACGGCAAACAGCAGACAGACGAGCGATGGTCAGGCCCAAACCTCGCAGCCCAGCAACCAATCAGAGCCTCAGGGTCAggcacctcctcctcctccaccgaATGGAACCAGCCAACAGACGGGTCACGGTCAGGGGACTCCAAGAGTGATCAGAATCACTCACCAGACCATGGAGCCAGTGGTCATGATGCAGATGAACCTGGACGGAACAACAGCACCCATCCATGTACCAGGACTGCCACCAGAGTTCATGCAGGCCATCATGCATCAGATCTCCCAGCAGGCTGTCGCCATGGCAACTGCAGCCTCTGCTGGACACCAGGGGCAGCAGCAGAGCACCGCAGGCACTGCAGGTGCCCAGAATGCAGATAGCCCGGCTCCTCCACCACCTCAAGCCAGGGTGGTCATCACACGGCCAACCTTATCTCCACGTATCCCACAACCCATGAGCACCAGAGGGACTACCATCAACCTGCGGGCAACAGTGCCCCCATCAGCAGGACAACAGACTAACCAGGGCAGCCCTATGACGTCCTCTCCACTCACACAGATGGTCAGTGGTTTGGTAGGGCAGCTTTTGTTGCCATTGCACACAGGCGACCAGACGTCCACTACATCATCGTCCcattccttctctttctctaccTCCACAGCGACCACTTCCTCCTCCTctacctcctcctcctctgctcCTCCATCCTCTGCTAACACGTCCGGTCAGACGTCGACCCACACCACCAGCACGGCGTCTGTGGGGCAGTCCCAGGAGGCCGGCCCGGGAGACAACCTAGCTCAGCTGCTGGGCTCACTTTTGGGAGGAGTTGCTGGAGCTGGTTCAGGGGTGTCTGGAGGACCTCCCTCCATTACAGTGACTGTTCCAGGCGTCCCTGCGTTTATCCAGGGCCTGTCTGAGTTCATTCAGTCCGGCCAGCCTGTGTTTCCTCCACCAAACCAGCAGCCTCCACCCTCGCAAGCCACGCCCTCTGCCCCTTCAGAAGCCGCCCACACTACTACCCCACAGCCTCCTAGTGGAGGTGGAGAGACCCTCAGCCCTGAGCTTTTCACAGGCATCGTGCAGGGTGTGCTGTCGACAATGATGGGCTCTCTGGGTGCTGGTCAAGGCAACACTGAGAGCATCGCCCAGTTTATTCAGAGACTTTCCCAGACCAGCAACCTCTTCACTCCTGGAACTGGAGACGCAGTGGGGTTCTTTGGAGATCTGCTGTCTCTGGTGTGTCAGAGTTTCTCAATGGTAGACATGGTTTTGCTGCTACATGGTAATCCTCAGCCTCTGAGCCGCATCCAGCCCCAGCTCACAGCCTTTTTCACTGAACACTATCTGCAAGGCCGAGAGCCCACCGATGCCAACATATCTAGTGCTGCTGAGGATCTGATCAATGGACTAGAGGAGTACATTGCAGAGAGTTTTTCCACTGTGACTGTTCGCGAGGGAGTGGACATCATCCAAACCAACATATCCTTCCTGAGACAACAGTTCACTCGAATGGCTACTCACATTCTGCGCTGTACAGATAACACATTTGGCCAGCGCTTGTTGTATATGTGCACCCAGGGTCTGTTTGAGTGTTTAGCTCTCAATCTTTACTGCTTAAGAGGAGAGCAGAGAGCTTTGACCACTGTCATCAACCACCGAATTAGGAGAATGTCAGCTGAAGTAAACCCCAGTCTGGTGAACTGGTTGACCAGTATGATGTCCATGAGGCTGCACGTGATTTTAGAGCACAATCCAGTCACTGAAGACCAAATCCAGCATTACGTCATCTATACGCAGAGCGAGTCATCTCAAAGAACAGAGTCGGAAGCACTTGCAAGCCATCAGTCAGATAATATGAGTGTTGAGATGGAAGAGGGTCTGTCTCCTGCTCCTGCCACCACTGCAGAGGAAGTCATGGCATCCTCAGGAGACACTGCTGATGGTGATGAACCACCTGGCAGGCCTTTGTTAGAGGAGACACGAGGAGCAGTAGCCATGGCACCCGCGGACAGGGAGGAGTCAACTGGGGAGGCGGAGCCATGGGCAGCAACTGTTCCACCTGAGTGGGTTCCCATCATAAGACATGACATGATGACCCAGAGGAAGATGAAAGCACAACCGCCTCTGTCTGATGCTTATCTGCATGGGATGCCAGCCAAGAGGAGGAAGACCGTGCAGGGGGAGGGTCCTCACCTCTCTCTCGCTGAGGCCGTGAGTCGAGCTGCCAGGACAGCGGGGGTGCGACCTGTTACTGCCCCAGACAGCCTGCAGGGGGAGCTGGAGGCGCCAGAGCTGCAGGAAGCCTATACACAGCAGGTGAAGAGCGATATAAAGAAACGACTGAGTGATGATCCAGACTACAACCACCAGCGCTTTCCCAACACTCACAGAGCTTTTTCTGAGGACTCCTAACCCTACAGCTCTGTTTACTCTCTTGTCATCTGTCAAACATAGTCGTGACCATGACGTCTCAAAGGATCGGCCAATAGCGTCTCATGCATTGAGGGGTTCCAGCTGTTTTGAAATTGGCGACTGACACACATCTCGGATGTCTGCCGTAGTCAAATGTGTGGATAGTGGCTAAATATAGAGCCGGTGAACTAGACCGGCCTTGGAGGCAGAAGAAACTAGACTTTCTTTCCGCTACGTGGCATCTATTTGTCAGAAACAGCATCTTATAATCTTAGTAGATGTCAAAACATTCAATTTTACTCTGACGGGATTTATATACGCCCCTGTCTATTGTAAATTAGCTGTACATTGTTGTAATaagttgttttaataatgacaataGTAGCAGGCACATACACGTGAAGAAAAACTCATTCGTTCCAGCTCAACCTGCTCGGTGTGTAGATAGAGGAGATGCCAAGATTGACGTTTACAAGCTCCAGACATGTTGAACATGATTAGATGTACAGCGCTGCACATTCGTCACTGAGGACTGGAAGAGTTTTAGTCATAGTGATGCCATACAGCTGTTATTTGTAAGTATTTCTTGCATGCCAAAAACATCTTGTTGGCTCCATCATGTTGTTCATGAATGTGgctgttacaaaataaatggttCAAGTCTAGAATTACTTCTAATTTTAAACAGACGGCTGGGTCTGCCTCTATATGTTTGGCCACTTACATTAATGTGGTTTAGTTTTTAAAGCAAACGCAATGACtttcatttgaatacaaattggtatttttttttttaagatgcctAGGAATTTGAATCATTGGATGACAGTCTTTGCATTAATATTGTCTCAACCATGATGCAGCCGTgttagaacattttaataaataaaacattatccTTCAAAAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194151 lncRNA downstream 5180 8175383 ~ 8176840 (-) True G131464
XR_006246989.1 lncRNA downstream 37825 8142931 ~ 8144195 (-) True LOC122323284
XR_006247118.1 lncRNA downstream 98124 8078100 ~ 8083896 (-) True LOC122324233
XR_006247114.1 lncRNA downstream 135141 8046276 ~ 8046879 (-) True LOC122324217
TU194130 lncRNA downstream 185626 7996092 ~ 7996394 (-) False LOC122323519
TU194202 lncRNA upstream 29039 8224819 ~ 8272803 (-) True G131495
TU194216 lncRNA upstream 53041 8248821 ~ 8249227 (-) True G131501
TU194221 lncRNA upstream 84214 8279994 ~ 8280260 (-) True G131506
TU194222 lncRNA upstream 86821 8282601 ~ 8282824 (-) True G131507
TU194223 lncRNA upstream 87318 8283098 ~ 8283441 (-) True G131508
XM_043218400.1 mRNA downstream 7548 8164868 ~ 8174472 (-) False abcf1
XM_043218399.1 mRNA downstream 7548 8164868 ~ 8174472 (-) True abcf1
XM_043218401.1 mRNA downstream 19857 8150959 ~ 8162163 (-) False ppp1r10
XM_043218402.1 mRNA downstream 19857 8150959 ~ 8162163 (-) True ppp1r10
XM_043217224.1 mRNA downstream 34535 8145636 ~ 8147485 (-) True agr2
XM_043218467.1 mRNA upstream 1931 8197711 ~ 8215983 (-) True hpcal4
XM_043218008.1 mRNA upstream 91365 8287145 ~ 8320901 (-) False trit1
XM_043218007.1 mRNA upstream 91370 8287150 ~ 8320901 (-) False trit1
XM_043218006.1 mRNA upstream 91372 8287152 ~ 8320901 (-) True trit1
XM_043218206.1 mRNA upstream 126869 8322649 ~ 8326971 (-) True myclb
XR_006247052.1 other downstream 52750 8118949 ~ 8129270 (-) True khdrbs1b
XR_006247051.1 other downstream 52762 8121512 ~ 8129258 (-) False khdrbs1b
TU193992 other downstream 576877 7602133 ~ 7605143 (-) True G131373
TU193918 other downstream 784074 7395180 ~ 7397946 (-) True LOC122324169
TU193894 other downstream 821909 7356621 ~ 7360111 (-) True LOC122323893
TU194205 other upstream 91514 8287294 ~ 8320885 (-) False trit1
XR_006247071.1 other upstream 93808 8289588 ~ 8320901 (-) False trit1
XR_006247069.1 other upstream 531479 8727259 ~ 8738786 (-) False si:dkeyp-120h9.1
XR_006247085.1 other upstream 555589 8751369 ~ 8757673 (-) False hey1
TU194713 other upstream 1112940 9308720 ~ 9309352 (-) True G131861

Expression Profile