RNA id: XM_043217637.1


Basic Information

Item Value
RNA id XM_043217637.1
length 2994
RNA type mRNA
GC content 0.46
exon number 12
gene id asns
representative False

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 5923625 ~ 5932827 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCAACGTCGTTACGTTTGGACCAATCAGCGCCAGGGCGGAAACGACAAGAATCTGCAGAAACACCGCACGTGTGTTTCATCAGCCGAGCATCGCCGAAGAAGAACGGGAAGCTCTCCCATCTCAACCAACGTAGACCAAATCCAGCGTCTTTTACAGGCATTACTAGAATGTGTGGTATATGGGCCCTGTTCGGGAGCGATGAGTGCCTTTCGGTTCAGTGCAGCAATGCTATGAAAATCGCTCATCGTGGACCGGACGCTTTCCGCTTCGAGAATGTCAACGGCTTCACCAACTGCTGCTTCGGCTTCCACCGCCTCGCCATCGTGGACCAGCTGTACGGCATGCAGCCCCTGCGCGTCAAGAAGTTCCCCTACCTTTGGCTCTGCTACAACGGCGAGATCTACAACCACACCAGGATGAGGAACCACTTTAAGTTTGAGTATCAGACTAAAGTGGACGGCGAGATCCTTCTGCACCTGTACGATCGCTTTGGAATCGAGAAGATGGCCTCCATGCTAGATGGCGTGTTTGCCTTCATCTTGTTGGACACGGCTAACAGGAAGGTCTTCTTGGGCAGAGACACGTACGGCGTGAGACCGCTGTTCAGACTGCTCACCGACAACGGCTTTCTGGCCGTCTGTTCCGAGGCCAAAGGTTTGCTGGACCTCAAAACCTCCATGTCCACTCCTGCAAAGATCACTCCCTTCCCACCGGGACACTTTGAGGTGTTTGACCTGAAGACCTCTGGAAAAGTGGAGTCTGTTCAGATGGATCGCTTTCACTGCTGCACAGAAGAACCCAAGCATGCTGCCTACAACATCCTGGAGGGCCTTGGCACAGGCTTTGAACTGGAGACGGTGAAGAGCAACATTAGGATCCTGTTTGAAAGCGCGGTAAAGAAACGCTTGATGGCTCACAGAAGAATCGGTTGCCTGCTCTCAGGTGGTCTCGATTCAAGTCTGGTTGCTGCTACTCTTGTGAAACTGGCCAAAGAAAAGCAGCTCCCGTATCCCGTCCAGACATTTTCCATCGGTGCCGAGGACAGCCCAGATGTTGCTGCCGCTCGCAAGGTGGCGGCGCACATTGGCAGTGAACACCATGAAGTGAGCTTCACTCCTGAGGAGGGCATCCGTGCGCTGGAGGAAGTCATCGTTCACTTGGAGAGCTACGACATCACCACCGTGCGTGCCTCTGTCGGAATGTACCTGATATCAAAGTACATCCGTGAGAAGACGGACAGCGTTGTGATTTTCTCAGGTGAAGGTTCAGATGAATTGACACAAGGATACATCTACTTCCATAAGGCGCCGTCACCTGAAGCAGCTGCTGAGGACAGTGTGCGTCTGCTGGAAGAGCTTTATCTGTTTGACGTGCTGAGAGCGGACAGAACCACAGCCGCACACGGACTGGAGTTGAGAGTGCCTTTCCTGGATCACAGGTTCACAGCATACTACCTCTCTCTGCCTGAGGAGATGAGAGTGCCTAAGGACGGTGTGGAGAAGCATCTCTTGAGGGAATCGTTTAAAGGGCTGAACCTCATCCCAGATGAGATACTCTGGAGGAGGAAGGAGGCCTTCAGTGACGGAATGACTTCCATGAAGAAATCCTGGTACGCCAGTCTTCAGGAGCACATCGAGGATGAGGTGAACGACTGTCAGCTGGAGAAAGCCAGTGAGAAGTTCCCTTTCAATCCTCCCACAACCAAAGAGGGCTTCTTCATAAGGACGATCTTTGAGAAGCATTACCCCGGCCGCTGTGAGTGGACCCCACATTACTGGATGCCCCGCTGGATCAAGGCCACAGACCCCTCGGCCAGAACCCTGTCCATCTACAAGCCCGATAAAGACCAGTAATCCCATCAAGCCTCAGACCACACAACTACAATGTTGccattatttaaatgcttttttttttttttttttttttgccttattttCTCTGTTCCCTTTACTAGACTAtcttttaggggttttttttccaaatagaaTTTATATTCGAGGTATTTTTCGAGGTTGCCGTGTTACTGTATCCTCTTATCAGGTTATAGGTTtctaaaatatagaaatagagcttttcttttctctaaCCAAAACAGGAGTGGGCTAGCGTGGCTTGTtggttaaaataaattgcacagtAATTGTTTCTtgtaaaaacagacaaattGTCACAACAGTCAAGCTATGGTGACCTAATATGATGTAAGTTCAagtcaaaaacacagaaagctTCTTAGTTTGAAGTAGACTCCATATTCAGTTATCCTGTCACATTAGTAAGGAATATATACAGTGCCGCTCAAAGGTTGGGGATCGCTAGTTTTTAAAGAAGCCCTCTCCAAATCCCAAAAAGATGCgtttatttgatgaaatacAGTACTGCTGTAAATATTACTAGttgaacacatttaataatttgctgATGCgaagcttaattttcagcatcattacggTTTTCTTCATAGTGTcccgtgatccttcagaaatcattcaaatatactgatttgctgctcgagcAATTTAAGCACTTATAGTTAGGCTGAAATGTAAGTAGTAATGTTACAAAGTTatatttcccaaaaaaaaagagttgccCTTAActtctgaatggtagtgtacatgTATTTTGGGTTTACTGGTGAATGAactaataattgtttttataatatctgGACTGAAAACCTTGGACTATGCACTTCTCCTAGATTCCTGCAGTGGGACTCCCACTTTAATGATTGTATTTGTGTGCTAATTGACCCAAGTAAATTATTGTTTGGCTATTTAAAACATTCCCGCTGCttttaagcagttatttattcTCCCCCCAACCCCCCTTTTTGTATGTTCTGTGGTGCGGCATCACTTTAAACTAGAAATGTGCTCTGAATTCGAGTAAAGGATGGTGCATGTAGTGTGACTGTTTAAAGTTTTAGACTTTAATGTGCAACATTCTGAGCTATCACATTAAACGATCTGGTCGTGGTATTGATGAA

Function

GO:

id name namespace
GO:0070981 L-asparagine biosynthetic process biological_process
GO:0005524 ATP binding molecular_function
GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193304 lncRNA downstream 40258 5752585 ~ 5883367 (-) True G130920
TU193297 lncRNA downstream 46912 5745848 ~ 5876713 (-) True G130914
XR_006247116.1 lncRNA downstream 75866 5838793 ~ 5847759 (-) True LOC122324223
TU193252 lncRNA downstream 248747 5674554 ~ 5674878 (-) True G130880
TU193179 lncRNA downstream 400659 5520939 ~ 5522966 (-) True G130827
TU193350 lncRNA upstream 174312 6107139 ~ 6162535 (-) True G130955
TU193367 lncRNA upstream 220212 6153039 ~ 6155564 (-) True G130969
TU193371 lncRNA upstream 265298 6198125 ~ 6198361 (-) True G130973
TU193376 lncRNA upstream 301217 6234044 ~ 6236277 (-) True G130978
TU193381 lncRNA upstream 315524 6248351 ~ 6293266 (-) True G130982
XM_043217941.1 mRNA downstream 87247 5811984 ~ 5836378 (-) True LOC122323838
XM_043217226.1 mRNA downstream 179048 5739319 ~ 5744577 (-) True LOC122323412
XM_043217405.1 mRNA downstream 207338 5706149 ~ 5716287 (-) True umad1
XM_043217406.1 mRNA downstream 207351 5706149 ~ 5716274 (-) False umad1
XM_043217403.1 mRNA downstream 218315 5675485 ~ 5705310 (-) True glcci1a
XM_043217639.1 mRNA upstream 805 5933632 ~ 5938584 (-) True bloc1s4
XM_043218358.1 mRNA upstream 6623 5939450 ~ 5970571 (-) True pard6gb
XM_043217547.1 mRNA upstream 230996 6163823 ~ 6192690 (-) True dtnbp1b
XM_043217548.1 mRNA upstream 230996 6163823 ~ 6192687 (-) False dtnbp1b
XM_043218016.1 mRNA upstream 457990 6390817 ~ 6395006 (-) True csnk2b
XR_006247124.1 other downstream 518407 5405086 ~ 5405218 (-) False LOC122324254
XR_006247125.1 other downstream 518725 5404769 ~ 5404900 (-) True LOC122324255
TU193049 other downstream 663461 5141505 ~ 5260164 (-) False G130744
TU193082 other downstream 671436 5245353 ~ 5252189 (-) True G130763
TU193048 other downstream 765623 5141505 ~ 5158002 (-) True G130744
TU193406 other upstream 429520 6362347 ~ 6363172 (-) True G131006
TU193577 other upstream 698362 6631189 ~ 6639220 (-) False sh3bp5lb
TU193649 other upstream 715611 6648438 ~ 6649389 (-) True polr1h
XR_006247130.1 other upstream 770496 6703323 ~ 6703389 (-) True LOC122324260
XR_006247131.1 other upstream 771044 6703871 ~ 6703937 (-) True LOC122324261

Expression Profile