RNA id: TCONS_00009884


Basic Information

Item Value
RNA id TCONS_00009884
length 1198
RNA type mRNA
GC content 0.44
exon number 5
gene id XLOC_005084
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 3287783 ~ 3299149 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAAGATGGCGGCTCCTGGACCGGGGGAGTATTTCAGTGTCGGGAGCCATGTCTCTTGCCTCACCTGTTTGGGGCAGCGTTTGCAGGGAGAGGTGGTGGCTTTCGATTACCCGTCCAAGATGTTGACTCTGAAATGTCCTTCCTCCAGCGGAAAGCCCAACCTCAGTGACGTCATCTTGATTAACTTAGCCTATGTTTCAGAGGTGGATATTATTAATGACCGCACGGAGACTCCTCCTCCTCTAGCATCCTTGAATATTAGCAAGCTTGCCAATCGAGCAAGGACGGAAAAGGAAGACAAGTTGTCCCAAGCCTATGCAATCAGTGCTGGGGTGTCAATTGAGGGCCAGCAGTTATTCCAGACTATACACAAAACCATCAAAGACTGTAAATGGCAGGAGAAGAACATCATTGTGATGGATGACGTCGTAATCTCACCACCGTACCAGGTAGAGAACTGCAAAGGCAAAGAGGGAAGTGCTCTAAGTCATATACGCAAAATTGTTGAGAAACATTTTAGAGATGTGGAAAGCCAGAAGACGATGCAGCGTTCACAAGCACAGCAAACACAGAAGGACTCGTCTTTATCCTCCTGAGTGGCGGGTTTGGCTCATTCGGGGAGGGCACCACGGGCATCAAGGGCCTCACAGCTGGTCCAAACCAGCACTCTTCTCCCCCTCTGCGCCGTCGTCCGAGGGTGGATGCACCAAGGGCCAAGGGTCTGGAAGatcaacaaaagaaacaaacaaaaaaacattaaaacaaaaaaaaagcaaaaatgttttaaagaaaaaaacctgAGAGTGAAAGAGTTCATTCTAAATTAGACTTTATAAAGATAATTTAAAACACCAATCATCAAACCAACCATAGTTTCTTTGACTAACATACAGTGTCTTATCCCCTCTCTGccccctcttcctcctcctcctgttTCATCTGAAATAGCGTTTCATATTTTCTTCTCTCTGACATCCCTCCTTCGCCTTCTATTCCATTTTGTCAAAAAAACGAAAAAATCCAACCAGTCAGAAACGCTTGTTAGCTTTATTTACTTTGAtgctttttcttttctcttttcttttctttcggCTGTTTATGTTTTACCAGTGTCTGTCTGTTctgtattttaaacaaaatgatgCCACACGTTACAAAggacattttctaaaataaaagtaacaaaaattCTGACTGT

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2164 Is expressed in brain and spinal cord. Orthologous to human LSM12 (LSM12 homolog).

Ensembl:

ensembl_id ENSDART00000182032

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00011067 lncRNA downstream 2874 3281756 ~ 3284909 (-) False XLOC_005083
TCONS_00011068 lncRNA downstream 2939 3282146 ~ 3284844 (-) True XLOC_005083
TCONS_00009873 lncRNA downstream 418199 2856861 ~ 2869584 (-) True XLOC_005075
TCONS_00011066 lncRNA downstream 543142 2703355 ~ 2744641 (-) True XLOC_005073
TCONS_00011064 lncRNA downstream 618283 2625669 ~ 2669500 (-) False XLOC_005072
TCONS_00010793 lncRNA upstream 31881 3331030 ~ 3382684 (-) False XLOC_005085
TCONS_00010794 lncRNA upstream 31881 3331030 ~ 3386819 (-) True XLOC_005085
TCONS_00011069 lncRNA upstream 220019 3519168 ~ 3544016 (-) True XLOC_005086
TCONS_00011070 lncRNA upstream 270598 3569747 ~ 3570081 (-) True XLOC_005087
TCONS_00011071 lncRNA upstream 483472 3782621 ~ 3786382 (-) True XLOC_005092
TCONS_00009883 mRNA downstream 35520 3249054 ~ 3252263 (-) True XLOC_005082
TCONS_00009882 mRNA downstream 50222 3220285 ~ 3237561 (-) True XLOC_005081
TCONS_00009881 mRNA downstream 154300 3095699 ~ 3133483 (-) True XLOC_005080
TCONS_00009879 mRNA downstream 210388 3054442 ~ 3077395 (-) False XLOC_005079
TCONS_00009880 mRNA downstream 210388 3058989 ~ 3077395 (-) True XLOC_005079
TCONS_00009885 mRNA upstream 15355 3314504 ~ 3453589 (-) False XLOC_005085
TCONS_00009886 mRNA upstream 352866 3652015 ~ 3705862 (-) False XLOC_005088
TCONS_00009887 mRNA upstream 353072 3652221 ~ 3705862 (-) True XLOC_005088
TCONS_00009888 mRNA upstream 414927 3714076 ~ 3721957 (-) True XLOC_005089
TCONS_00009889 mRNA upstream 441456 3740605 ~ 3756405 (-) False XLOC_005090
TCONS_00009859 other downstream 1797195 1490472 ~ 1490588 (-) True XLOC_005063
TCONS_00009831 other downstream 2665494 619669 ~ 622289 (-) False XLOC_005047
TCONS_00009912 other upstream 987217 4286366 ~ 4286480 (-) True XLOC_005112
TCONS_00009914 other upstream 996400 4295549 ~ 4298284 (-) False XLOC_005113
TCONS_00009915 other upstream 998708 4297857 ~ 4301375 (-) False XLOC_005113
TCONS_00009917 other upstream 999078 4298227 ~ 4301376 (-) True XLOC_005113
TCONS_00009948 other upstream 2100531 5399680 ~ 5418340 (-) False XLOC_005137

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000047_04596548_04605172.mRNA True 1222 mRNA 0.44 5 CI01000047 4595980 ~ 4605172 (-)
bowfin (Amia calva) AMCG00016698 True 812 mRNA 0.48 5 CM030122.1 27810648 ~ 27817193 (+)