RNA id: XM_043217639.1


Basic Information

Item Value
RNA id XM_043217639.1
length 1497
RNA type mRNA
GC content 0.47
exon number 5
gene id bloc1s4
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 5933632 ~ 5938584 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACACGCCGCTCCGCGTTGACTTCCACATAAACAAGAGCAGCGCAGCGGACAGCGGAACATGGAGCATCGCTTCGATAGGGCGGCCGCGGTGCTGTCTCCGCTGGAGGAGTCCAGCGCGGAGGTGAGCAGGGACAGCGGCATCGTGTCCCAGAGCGCCAGCAGCCTGTCTATGGTGAGCGAGGCCCTGAGCAGCGGCACCGTGTCTCAGAGCCCGAGCTTCGGCGCCGCAGTGGCCCAGAGCCCGAGCTCCCCGGCCGGAGCGACCCAGCCGGAGCAGACGCAAGACGACGAGCTCCTCAGACACACCGCCATCACCTACTCCGCTTATATCAGAGCCAACGCGGAAGAGGAGGTCCTGTGCTTGGAGAAAAGCCTGGAGGAAATGCTTACAAGAGTGGATGAGTTTGTCGGTATGCTTGATATGatTCGAAACGACACTTCGCAGGTGGTCAATGACAACCTGCCACAAATACAGAGAAAATCTGAAGAGATGAGAGAGATTTACCGAAAAATTGACAAATTGGAGGCCTTTGTCAAAATGGTTGGAGCCAATGTGAGCGCAATGGAGGAACAAGTAACTCAAGTCGAAGGCGAAGTCGGGACCCTGCCAGGCACCTTCAAGAAGTTCTTCCGCACAATGGCCGTAGCGGGTTTTTTAAATAAACCTGCTAGCCCAAGAAGGCAATCACAAAAACATCAAGAGCTTCCCAGTGTATTTAGGACAGACGACTACTTCAAACCTCCGTCTGAGCAGTAAGAGAGACTTTACGAAGCGCCGATCAAGACCAGGGTTCTCCGACATCAGCAGCGCGGCCTGCTTTCAGACGCAAACACCCAGGATCGCTAACACGAGCATTTCACGGTCACTTTATCTGCAACTTATTCAACGAATCCTGATCGAAGCCAACTGTTATTTTAGTAGGCGGTCTAATGGCAGCTAGTTTTATAACAAACAGAAGCTTTGGTTTTAAATGACTCGtttgtttgggggtttttttgtttgttttttttcctgaagtgCCTCTCCAGGAAGTCTGACGCCGTTTCTTACAAATGGGAAAGCATGTCCGAAAAATGTCAGAACATTAGTTGAAACGTTTCTATGATTTTTACTCCTACTTGTACATAGTTTTACAGCTTTATAATTTTTTCGCCCTCGGTCTTTTCTTCCAGTGCTTGAGATCTATTTGCACTACTTTCCCTGTTGCTATTTATCACTGATCTATCTTATTAAGGTCTACAAATTGGTGTCTGGCACATGTTGATGACGAATCTGTGATGAATTCACGTAACCAGTGTAAAGGACTTTTGGTTATTATGTAGCATTGAGTGCCGCACTCCTCAGCCAAACAATCGCCAAAAGAAACATTGTTTGTCATGgactatttactttttatacttAAATGTCCATGGACGGTTGTGTTATGCTACTTGTTACATAATTGTGACTAACGATTGtctatttgtaataaatttccAAATGTAGCCTATCATAAA

Function

GO: NA

KEGG:

id description
K08366 BLOC1S4, CNO; biogenesis of lysosome-related organelles complex 1 subunit 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193304 lncRNA downstream 50265 5752585 ~ 5883367 (-) True G130920
TU193297 lncRNA downstream 56919 5745848 ~ 5876713 (-) True G130914
XR_006247116.1 lncRNA downstream 85873 5838793 ~ 5847759 (-) True LOC122324223
TU193252 lncRNA downstream 258754 5674554 ~ 5674878 (-) True G130880
TU193179 lncRNA downstream 410666 5520939 ~ 5522966 (-) True G130827
TU193350 lncRNA upstream 168555 6107139 ~ 6162535 (-) True G130955
TU193367 lncRNA upstream 214455 6153039 ~ 6155564 (-) True G130969
TU193371 lncRNA upstream 259541 6198125 ~ 6198361 (-) True G130973
TU193376 lncRNA upstream 295460 6234044 ~ 6236277 (-) True G130978
TU193381 lncRNA upstream 309767 6248351 ~ 6293266 (-) True G130982
XM_043217637.1 mRNA downstream 805 5923625 ~ 5932827 (-) False asns
XM_043217638.1 mRNA downstream 1612 5923625 ~ 5932020 (-) True asns
XM_043217941.1 mRNA downstream 97254 5811984 ~ 5836378 (-) True LOC122323838
XM_043217226.1 mRNA downstream 189055 5739319 ~ 5744577 (-) True LOC122323412
XM_043217405.1 mRNA downstream 217345 5706149 ~ 5716287 (-) True umad1
XM_043218358.1 mRNA upstream 866 5939450 ~ 5970571 (-) True pard6gb
XM_043217547.1 mRNA upstream 225239 6163823 ~ 6192690 (-) True dtnbp1b
XM_043217548.1 mRNA upstream 225239 6163823 ~ 6192687 (-) False dtnbp1b
XM_043218016.1 mRNA upstream 452233 6390817 ~ 6395006 (-) True csnk2b
XM_043217305.1 mRNA upstream 457175 6395759 ~ 6415177 (-) False prrc2a
XR_006247124.1 other downstream 528414 5405086 ~ 5405218 (-) False LOC122324254
XR_006247125.1 other downstream 528732 5404769 ~ 5404900 (-) True LOC122324255
TU193049 other downstream 673468 5141505 ~ 5260164 (-) False G130744
TU193082 other downstream 681443 5245353 ~ 5252189 (-) True G130763
TU193048 other downstream 775630 5141505 ~ 5158002 (-) True G130744
TU193406 other upstream 423763 6362347 ~ 6363172 (-) True G131006
TU193577 other upstream 692605 6631189 ~ 6639220 (-) False sh3bp5lb
TU193649 other upstream 709854 6648438 ~ 6649389 (-) True polr1h
XR_006247130.1 other upstream 764739 6703323 ~ 6703389 (-) True LOC122324260
XR_006247131.1 other upstream 765287 6703871 ~ 6703937 (-) True LOC122324261

Expression Profile