RNA id: XM_043217642.1


Basic Information

Item Value
RNA id XM_043217642.1
length 5273
RNA type mRNA
GC content 0.48
exon number 21
gene id epb41a
representative False

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 3623775 ~ 3679373 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTATTTTACGAGAACCTAAAcagcgttttaaaaaaaaaaaagcttggatAATTTTGTACATGGGTTTGCTTGTTGTGTGAAATCTGTGAGAAAGCGGTTTGTGGATATCTTGAAGTGGATAATTCCTAGTCGTTGATGAATTAAAGGGAAAGCGACTGCCATGACCACAGACGAGGCGGAGAGCGTTCACAAGAAGCAGGTGTGCGAGCAGCAGCAGGAAGAGGAGGACCCCGCTGCTCAGGAGCCGGGCCCCCCTGACAGCACTCAGGACAGCCCCTGCGGCACGCCGCCCCCCGGGGGCTCGGAGGAGGAACAGCAGCTGAAGCCGCGCCAGCGCACCTCGGCTGGCCGCGGCCTGTCCCGCCTCTTCTCCTCCTTCCTGAAGCGCCGCTCGCAGTGCTCGGACGGAGAGGGGGTGGAGACGGAGAGGGCTCGGGACAAGGACGGCCAGGAAGAGCCCAAAGCTCCCATAGCAGACCCCGAGCCAGAACTACGCATAGAGGGCGATGTTGCTCTAGACCAGCACTCGATCAGCAGTGCTGAAAACCAGCAAATCGTAGCAGATCAGAAAGAAAACGCCGAGCTGGAGTCCGGCAAGGCAGAAAAGGGGgagaagaaggaggagaagaaggagaagaaggaaaagaaggagaagaaggagaaagagaagaaagagaaagcagatAAGGAGAAGCCGGAGAAAAAGGAGAAGCCGGAGAAGCcggagaaaaaagagaaagcggagaagaaagagaagaaggagaaaaaagagaagaaggagaagaaaaacGAGGACAAGGCCAAAGgagaggagggagagaaagacaaGGAGCGTgagaaggaaaaagagaaagtagAGGAAGAGGCCAAGCCGGAAGACGCAGGTGCGGCGGAAACAGAGGTGAAGgaggaaggagaaaaagaggaagagaaacagGAGGAGAACGcggtggaggaggaagaggaggaggaggaggggaggaAGCAGAAAGCATCTCGCCGCCCCAGGATCATGCACTGCAAAGTCAAGCTGCTGGATGATACTCTCTTTGAGTGTGAGCTGGAAaAACATGCCAAAGGCCAGGAGCTGTTTGCAAAAGTGTGCGACCACCTGAACCTGTTAGAAAAGGACTATTACGGACTGGCCATATGGGAGACGCCGACCATAAAGACGTGGCTGGACTTCACCAAGGAGATCAGACGGCAAGTTCAAGGCACCAACTACGATTTCACATTCAATGTGAAGTTCTACCCTCCTGATCCTGCCCAGCTGTCAGAAGACATCACCAGGTACTACTTGTGTTTGCAGCTGCGGAAGGACATCAAGAACGGCCGTCTGCCTTGCTCTTTCGTGACCCTGGCCCTGCTGGGATCTTACGCCCTTCAGTCTGAGCTGGGCGAGTACGACGCCGAGGTTCACGGCACCGACTACGCCAAGGAGCTCCAGCTCATCCCGGGACAGACCAAGGAGCTGGAGGAGAAAGTCATGGAGCTTCACCGCACGTACAGGTCTATGAGTCCGGCTCAGGCTGATATGATGTTCCTGGAGAATGCTAAAAAACTGGCCATGTACGGGGTTGATCTTCACCAGGCCAAGGATCTGGATGGAGTGGATATAATGCTGGGTGTTTGCTCCAGTGGCCTGATGGTGTATAAGGATAAGCTGAGGATTAATCGATTCCCCTGGCCAAAGGTTCTCAAAGTCTCCTACAAACGCAGCAGTTTCTTCATCAAGATACGGCCATCTGATCTGGAACATTATGAAAGCGCCATTGGCTTTAAACTGCCCAACTACAAGGCTGCCAAGAAACTGTGGAAAGTGTGTGTGGAGCATCACACGTTCTTCAGGCTGACCTCCACAGAAGCGGCCACCACTCCCAGGAAGTTCCTGGCTCTGGGATCCAAGTTTCGCTACAGCGGCCGAACTCAAGCTCAGACCCGTCAGGCCAGCTCCATGATCGACAGACCCGCTCCGCTCTTCCAGCGCTCCGCCAGCAAGAGGGCATCTCGCAGCTTAGACGGAGCCATGGTCTCGACCCCGGATAAGAACGCCCGTCCCGTCAGCGCTCCCATCATGTCTCCCATCTCCCCAGGCGACATGGCTCCCTCCCCAGTAGCATCTGCCACCCGCACTGACCGTAAAGAGACGTCCACCCCCACGGGCCGTCCACGCTCCACTGACAGGAAGAGTGAGGTGAGGGCAGAGGCCCATGTGACGGATGGctccaaaacacacagcaaagCAGAGGGCACACCTGAAATCAAGACGGTAGCTCGGCGAGAACGGCGGCACCGTGACGCCCCGGTGGTGACGGCCACCAATGGGGAGAGAAAGAGCCAGTCGCCACGGGCGGACACAGAGATGGTGCGCATGAGGAAGctTAACCCTAACGGCTTGGCATGCACTATTTACCTCACTAACTATAATGACATTGAGAAGACACAGACAGAAATCATGCGTCATCACACCAGTATCAGCGAGCTCAAGCGGAGCTTCATGGAGTCGGTGCCCGAGCCCCGGCCCAGCGAGTGGGACAAGCGTCTGTCCACCCACTCGCCCTTCCGCACCGCTAGCATCAACGGCCAGATGCAGCCAGACTCTCCTGTGGTGAAGACGAAAACCATCACCATTTCTGATGTCACCAACTCCCTTCGCAGCGAAATCGCCACCAAGGACATCCCCATTGTGCATACGGAGACCAAGACCATCACATACGAGTCTGCCCAGCCCAACGCGCTGTCGGAGAAGGAGTCCGGGATGCTGTTGAGTGCTCAGACCATCACCTCAGAGACGGTcagcaccaccaccaccacccagATCACCAAGACGGTGAAAGGCGGGATCTCAGAGACCCGTATCGAGAAGAGAATCGTGATCACTGGAGACACTGAGATTGACCATGATAAGGCTCTCGCTCAGGCTATAAAGGAGGCGAAGGAGCAGCACCCCGACATGTCCGTGACTAAAGTGGTGGTGCATCAGGAAACGGAGATCACCCCGGAGTAACTCCTGCATGCGACACAGGGTGAAAAAAAACCGGGACCAGTCGGGTTtatgaatgtgaaaaaaacaacgCGAGATCCCTCACAAGCAGCCCCTTCCCATCAGCCCACGAGCTCCCCTCACGGACAAACACTTCCTGTAGCAGCACATGTCCCACCCAGTCACTGCCGACCGAGATGCCACTTTCCAGACCCTAAACATCCGTCAGATCTGCACCTACTCGTGTCCAGCGTCCTGCCTGACCTCCACCACCTCAAAGACATTCCACGACGGACTGAACCATGTTACGAAGTCGTTTTCTAAAACAGTGGCTAAAGagcaactttttatctcaaatTCATACGGTATTTTTAGGGTGGATTCCAAAGGGATGGTTCACATTATAACAACTGGGCGGCGGGTATTTTCTAAAGTGTCATTTTGTTGTAGTTGTcgttgttgattttttttgttatttaatatttgtttgcaATTGGTTGATTTATCTGTATCATAATCTGAAACACTCCGAAGGCAACGTTCACCCAAAATTCAAACAGTGATGCAAAAGCTATATTTTaggactttctttttttctgtgaaacaaaaacgAGACGTTTAGCGGAATGTTCATACTGCTCTCTTCcacttttttttcaagattaaatttagggatagttcaccccaaaaatgttattctgtcatcatttactctatGTCATTCCAAACGATATTTTGAGAAGATGTTTTGAGGAATTTTAGCAGTCACCCAAACCAACGTTTGATTGCCaaccttcttcaaaatatcttctttttgcATTCAAAACACGAGCAAGtcatacaaaattaataaattgatgATAGAAGTTACCATTTttggtgaaccattcctttaagtttTATAATTCTGTTATTTGATTTCCattcacacacattcaaatTTGACAAGTTTAACATCAATAATGCTTTAACATGCAATTTCAATGTTCCTTAAACCAATCATATGATGTCCtaggctgtttttttaaaaaacttttatggtGCTCATTTTAGCAACTTTTGGAACCGTTTTTGCTTTCATTGCATTGAACCTTCTGCTAAACATCTGAATTgattgaagaaaaaagaaaggttaGAGTCAACtgagaataatttttatttttgggtgaactgttcttaGTCCAGTACTCCATCCTGTTGTAAAGTCCCATATTTTATGTTCCTCTTAAATGtgaaaagtattattattttgttctcGGTGTAAAAAATGACGtgttattttcattcagaatGCTGGAGCAGCTTCAGATGTTCTCTCGTGTTTTCAAGTTACTTTGCATATTCGTCGAAGGCTTGTatcatttctcttttcttttgttgGTAACGTCGTCCTGTGTCATCATGGATTGGGGGTCCGAAGAAGATGGGGGGGTGGGCTATCGTAGTGAAACTACACTCTGTgatgtttctatttattttcagcagttttgtttctcgtttgtgtgtgtactttgcATTTTAGGCGCCCTGCTCtcttaaatgcagctttgatgtttttgtattaGATCCAGAATCCCAAACACCAGCTCCCGCCAGTTTTTAAATGGGATTTGCAGGGATAACTTTGCTCATTTTCAGTATATTTCTACTTTTCTACTAGAGGGGGCAGTGTGTTCTTACCCACGAGGTCTATAGCAGATCTGCAACAACCTGAAGTGGTTTTAGGTGAATTGGAAATCGATTAGCCGGGAATGCAGCTAATTAGCAATTACGGTAATTAACAGCGCCGAGCGTGAATCCGAAAGCGATTTAAGGCGAAATTAAAACGTCCCGGTCACTCTTCGAGACATTCAAAACGCCTCTGATTGACTTTAAAGGTCACGACGGACAATTCTAGAGCGGTAATTCAATTCTAGAAAATCTTAAGTGGGAATCTGTGGATTTTATATCGTGCATCAACACTGCCGGTGGCGTAAAGCATACTGCCCCACCAGTCCAGCACGTccagtttttaaatgtctattttaaaatgttacgcTTTTATAATAGTTCAAATAGTATCCTGTACAGAGAGCGAGGTGTCGTAGTTCGTtcagtgtgttgttttcttcattGTGGCACTCCTTTCCTATGCTTGTCTGGGGTGAAGAAAAGAAACGAACCGCACGTTTGTCCTCAGAGGTTCTCTTTCTTCTCATCGCACCCCTTTTTCTTTTGCcatcactggaaaaaaaaaaagacaaatgtacaATATAGCACCATGCACTGAATAAACTCCAACTTAGACACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192190 lncRNA upstream 54881 3572274 ~ 3576190 (+) False sh3bgrl3
TU192143 lncRNA upstream 89677 3465239 ~ 3541394 (+) True G130150
TU192360 lncRNA downstream 218688 3898061 ~ 4076098 (+) True G130313
TU192366 lncRNA downstream 250840 3930213 ~ 3935051 (+) True G130315
TU192369 lncRNA downstream 266022 3945395 ~ 3964718 (+) True G130318
TU192394 lncRNA downstream 471304 4150677 ~ 4160027 (+) True G130336
TU192396 lncRNA downstream 496895 4176268 ~ 4199257 (+) True G130338
XM_043218446.1 mRNA upstream 8538 3617141 ~ 3622533 (+) False ccn2b
XM_043218445.1 mRNA upstream 8538 3617143 ~ 3622533 (+) True ccn2b
XM_043218001.1 mRNA upstream 40418 3583094 ~ 3590653 (+) True stx12
XM_043218000.1 mRNA upstream 40418 3583150 ~ 3590653 (+) False stx12
XM_043216958.1 mRNA upstream 48681 3577978 ~ 3582390 (+) False trnau1apa
XM_043217736.1 mRNA downstream 160868 3840241 ~ 3852009 (+) True lrp12
XM_043217737.1 mRNA downstream 164304 3843677 ~ 3852009 (+) False lrp12
XM_043217925.1 mRNA downstream 180091 3859464 ~ 3862610 (+) True LOC122323814
XM_043217926.1 mRNA downstream 183855 3863228 ~ 3891965 (+) True LOC122323815
XM_043217928.1 mRNA downstream 370537 4049910 ~ 4053157 (+) True LOC122323824
TU192043 other upstream 537357 3093067 ~ 3093714 (+) True G130077
TU191970 other upstream 652655 2970687 ~ 2978416 (+) False phactr4a
TU191942 other upstream 737579 2889689 ~ 2893492 (+) False serinc2
TU191918 other upstream 844723 2785925 ~ 2786348 (+) True G129993
XR_006247126.1 other upstream 1300795 2330141 ~ 2330276 (+) True LOC122324256
TU192216 other downstream 80494 3759867 ~ 3760985 (+) True G130208
TU192476 other downstream 565395 4244768 ~ 4259085 (+) True G130372
XR_006247039.1 other downstream 715212 4394585 ~ 4406579 (+) True ptpn2b
TU192559 other downstream 780542 4459915 ~ 4464904 (+) True znf706
TU192560 other downstream 780542 4459915 ~ 4464590 (+) False znf706

Expression Profile