RNA id: XM_043217673.1


Basic Information

Item Value
RNA id XM_043217673.1
length 1013
RNA type mRNA
GC content 0.54
exon number 7
gene id psmg2
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 4408733 ~ 4410934 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCAACGTCAGGTCCTTTTTCCCCAAAGCGAAGGaaattgaaagtaaaaatcACTACAGAGCCACGGCTATTCATCTACATTTACTTTGTAAATCCGACATAAACCgtcttaaaaatgttcattccGTCGGGGGAGGATGTTCCTTCGTTTAAAGGCTTTACTCTGATAATGCCCGCTGTGTCCGTTGGAAACGTGGGGCAGCTCGCCGCGGATCTTCTCATCTCCACTCTGAATATGCCCCGAGTGGGGTACTTCCACACGCACTGCCTCACGCCCATGGTGGGAAACAACCCGTACGCCACCTCGGCCGAGGACGCGGCGCAGCTCAGCACCGGCGCCGAGGtgtaCTCTCACAGGGACCTAAAGCTGGCCGTGCTGCAGATCAGGACACCCATCATTCAGACAAAGGTCAAGTCCTTCCGCAAGCTGATGGTTTCCTGGATCAAGAGCAGCGGGTTCCTCAGGAGCGTGCTGCTGTCCAGCAGTCACTCGTATCACAGAGACGACCAGCAGCTTCACGGCGCTCCTCTGCGGTACCTGCTGACCCCGGCTCTGCAGAAGCAGGAGGCTCCGAGGGTGGAGGAGCTGGGCTGGACGGAGATGGAGAGGATCAGCGCGTTTCCCGGGATCTCTGACTCAGAGCAGCGCCTCTACATTCCCGGAGGAGGAGTGACCAAAGCCCTTTACACGGACTGCTGCACAGAGGGCATCTCCATGGCAGTAATGCTGATCTTCTGCTCCGAAGGAGACAACATCCCCGACGCGTTTGCTCTTGTCAACCATCTCAACGACTGGCTTCATCTGCTGGAAAAACCTACACAGGGGTCGGTGCAGTGGCGAGTTCCTCCGTCATGGAGGCTGCTGTTTGGCAGCGGTATCCCACCTCTTCTCTTCTGAACCAGAGAGATCCCCGATGGACTGACGATTGAGCGGCtgaatacacattttgcttgtAAATAAGTGAGATAGCACCGAAATAAAATAAGCTGTAGTATTATTTTTGCCAAAAAATG

Function

GO:

id name namespace
GO:0043248 proteasome assembly biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K11876 PSMG2, PAC2; proteasome assembly chaperone 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192654 lncRNA downstream 339 4408194 ~ 4408394 (-) True G130494
XR_006247040.1 lncRNA downstream 2833 4404017 ~ 4405900 (-) True LOC122323668
TU192614 lncRNA downstream 108407 4298509 ~ 4300326 (-) True G130465
TU192611 lncRNA downstream 120863 4287488 ~ 4287870 (-) True G130463
TU192607 lncRNA downstream 141309 4267179 ~ 4267424 (-) True G130459
TU192638 lncRNA upstream 58825 4469759 ~ 4484396 (-) True G130482
TU192630 lncRNA upstream 79326 4490260 ~ 4491487 (-) True G130476
TU192692 lncRNA upstream 129335 4540269 ~ 4541591 (-) False polr2k
TU192926 lncRNA upstream 327871 4738805 ~ 4744555 (-) True G130690
TU192946 lncRNA upstream 332638 4743572 ~ 4941832 (-) False G130696
XM_043218276.1 mRNA downstream 21118 4378514 ~ 4387615 (-) False seh1l
XM_043218278.1 mRNA downstream 21120 4380691 ~ 4387613 (-) True seh1l
XM_043218106.1 mRNA downstream 32373 4303415 ~ 4376360 (-) False ldlrad4a
XM_043218105.1 mRNA downstream 32373 4303415 ~ 4376360 (-) True ldlrad4a
XM_043218107.1 mRNA downstream 82845 4303415 ~ 4325888 (-) False ldlrad4a
XM_043217825.1 mRNA upstream 21209 4432143 ~ 4450461 (-) True grhl2b
XM_043218357.1 mRNA upstream 118590 4529524 ~ 4537983 (-) True spag1a
XM_043217762.1 mRNA upstream 129045 4539979 ~ 4541629 (-) True polr2k
XM_043217588.1 mRNA upstream 162514 4573448 ~ 4580921 (-) True adck5
XM_043217841.1 mRNA upstream 296388 4707322 ~ 4735660 (-) True LOC122323748
TU192049 other downstream 1258944 3149154 ~ 3149789 (-) True G130083
TU191990 other downstream 1497130 2908489 ~ 2911603 (-) True G130041
TU191925 other downstream 1575777 2825344 ~ 2832956 (-) True G130000
TU191907 other downstream 1657163 2740004 ~ 2751570 (-) True LOC122323398
XR_006247129.1 other downstream 2089360 2319236 ~ 2319373 (-) True LOC122324259
TU192945 other upstream 397163 4808097 ~ 4941832 (-) True G130696
TU193036 other upstream 676310 5087244 ~ 5104353 (-) False LOC122323502
TU193037 other upstream 676310 5087244 ~ 5222883 (-) True LOC122323502
TU193035 other upstream 689887 5100821 ~ 5104353 (-) False LOC122323502
TU193048 other upstream 730571 5141505 ~ 5158002 (-) True G130744

Expression Profile