RNA id: XM_043217692.1


Basic Information

Item Value
RNA id XM_043217692.1
length 2874
RNA type mRNA
GC content 0.43
exon number 14
gene id si:ch211-13c6.2
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 12943474 ~ 12952055 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCAATTGTACCACAGAAGGAGCCGAGGACTAAGGAAGTGGGTGAAAATTGTATTACATCACTTTTGATTTTGTAATgtcgatttatttattttacttttcaagAAGAAAATAGTTTTACGTTGAATGCGTTGCAAACGCAAGTTATTAACTCGCTGATCTTGTGCTGATCCTCGCGGACGAAGCTTCACAGTAGTTTCGAAACATGGCCGATTTGCTGACAGTGTACGACGATGACCAGGCCAACAGCTTCATCGACTGCACGATCTGCGATAAAAGAATACGGGGAGAAACGCATTACAAAATCCACGTGACCACATTACAACATTTAAAGAAAGAGGACACCCTGGCTTCACAAGGAGAGATTCTGAGAACACCTCCACTGCCAGAATGGACCGACATAATAGAATATTTGGATTACCTGAATCTTGATGAGCCCATTATTGGTCTCAACTCCCTGATACAGATTCCAGATCATGTCACTGACGATGGCAAAACAGTGTTGAAGTACAAGTGCAGAATGTGTGTCGTGGAGATGGACCTTTACAGCATGGTGGCCCATATTGTAGGACGtaaacacagacaaaaatacTTGGAGCTGAAAAGACCAGACTTGGTGACATGGCAAGACAACAATCAGAAACAGCCAGGTCTTGTGGCCAGAGCTAAAGCTGCTGTAGTTGAAAAGCAGGAGGGATGGGGAAAGCCAGTGGCACTCAAACGACCTCAAGAGAAATTCAGAAATGTCTTCCAAGGAGGAAGCGATTTACGTGCCAGTGTTCATGAACAACCCTACTATGGACAAGAGCCTCTTAGGAAGCCACCTTTCCCTGAACAGGTTCAAAATCAGATGTATTTGGATGAAGAACAGCATGGAAGTTCCTATTATACAGGAGATAATTATGACCAGTGCAGCAGACCTAAAAATCCAACCCACGATGTCCACCAACAATTCTATCCAGAAGAAAACCAACATCAAAAACATTACGAAAATGCTGACGTTCGAGGAAGACACTCACGAGGTGATGGTTATTCGGAAAGAGAAGTGCATACTAGGCCCTATGCAGAACAGGGTGGACGGAGACTGCAAGAATACTATAAAGAAGAAAGTCTTGGCGGAGGACAGTTCTCAGGAGGTAAAATAAACCGATTTAATGACAAAGACCTCAGAATCCGCCCAGGAGCATCAGAATATCAGAAAGACCAAGTGGAAGGTAGGCGATATGCAGGTTATGAAGAGAGAAATCCTGCCATGAATCCTCCCATGTCAATGCAAGGAAGGAGCTTTAATGAGGAGAAAAGGGGGACTGTCAGAGAAATGCACAGTAGGCCTTGGGACAAAGCTAATGAGGTACAAGGTTACCTACCTATGCTTCAACCCAGAGATTCAAGAGCATATTCACACGAAGCGGTTCCAgctaaaaagaagaagaagagcagaTTCTCTGATGCCACCGCAGAGGAAATAGCACACGCACATATGAGACATTCGGATAAATCCACCCTAAAAGAAAAACCAAGAGGACAACAGTTTAGAGCAAATCCTCCGccATTAAATATCCAATACATGGGTTCTGGAAGTACAACCCATCTTAAtccaaaacatgaaaatgttctGGATATACTTAGTGACATCAAGATCGATAATATGGACGAAGCCAGATTTCTTAAAGAAAAGCTGTGCACAGTTTTGAAAGAGTTTCAAGAAAACAAATCCAGAAGTATTGAGGGCCATGCTTCACAATCTGTTGGTGATCATAGAGGGGTAAAGCAGACAAGGGATGATCCAAATGGCATGCATTTAGGAAAGAGAGGTTTCCCAGAAGCCAGACGATATGACGACGGTCCCAGAAGTTTCCAAGAATCCAGACAATATGGAGATGACCCTAGAATGTTTCGAGAGGTCCAACAAATTGGGGATGACCCCAGAGGTCTTAGAGAGACCAGACATTATGAAGGTGATTACAAAGAGTCAAAACGATTTGAGGGTTATCCCAGTGGTCTTCAAGAAGAAAGGCCATATGCCAATGATCATCCAGAGAGGAGACGTTATGATGAAGATCCTAGACAAAAGGaacaacattttgaagaatattcTCGAGCTTCAAGAGCAGAAGCTCCGAGAAATACCCAAGAGACAAGATATTATGAAGATGATTACAGAGGCTTTGGAAATTTGGATCCTCAAAGAAACTGGGAGAATCAGAAGGGACGTTCATTAGAGCGTTTTGAGAACAGAGGCCCAGCAGATGTTGAGAGGGGTTTTCAAGccTCTTTACAAGAAGAAGCAAGGATGTATGCCGGGAGAGCACAGCAGAGGTCTCATCAGAGTGACTGTCACCCTGGAGATGAACCCTACGACCCGTTCAACCCGTCATCCTCTCCCCCTCCAGAAGCGTCCAGCTCCACCAGTCTTGACAAGATCGCATCAACTCTTCTTGAGCTTGTGGCTCGTAGATAAAGTTAGGCTCCTCAGTCAGATTGTTCGTCGTATAAGATAGTTATAGTTTAACAGTAGTCTACAGAGTTTGATCTTTATGTAAATTCATACAAAATTTTCCAGTAAATAACATACTGTTTTCATCTATACATACTGCTTATCCTCTGCAGGGTCACCGAGGGCTGGAGCTTTTCCCAGCATCTCAAggctcccacacacacacacacacacacacacacacacacacacacacactcctcattCATACTGCTTGCAATTACTACCTAATTTCTTACTGCTTTTGGTTTGTTGAGATTTGTAGCCTGCTTGCTACTGTGTTTTCAGATTGGTTTGTGTACTATGAAACTGTAATGGGTTTTGTTTGAATTGTTTAATAAGAAagattattgaaaaataataaaaagttcaacCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195654 lncRNA upstream 77879 12786644 ~ 12865595 (+) True G132498
XR_006247014.1 lncRNA upstream 108949 12831641 ~ 12834525 (+) True LOC122323456
TU195612 lncRNA upstream 274920 12667293 ~ 12668554 (+) True G132472
TU195568 lncRNA upstream 386272 12556964 ~ 12557202 (+) True G132448
TU195532 lncRNA upstream 442933 12499142 ~ 12500541 (+) True G132421
TU195692 lncRNA downstream 69382 13021437 ~ 13026026 (+) False jtb
TU195721 lncRNA downstream 149894 13101949 ~ 13102925 (+) True G132541
TU195730 lncRNA downstream 166661 13118716 ~ 13123966 (+) False G132547
TU195734 lncRNA downstream 166661 13118716 ~ 13123966 (+) False G132547
TU195738 lncRNA downstream 166661 13118716 ~ 13123966 (+) False G132547
XM_043217501.1 mRNA upstream 81386 12842382 ~ 12862088 (+) True tinagl1
XM_043217726.1 mRNA upstream 113675 12793977 ~ 12829799 (+) True gatad2b
XM_043217727.1 mRNA upstream 113675 12804722 ~ 12829799 (+) False gatad2b
XM_043217292.1 mRNA upstream 182346 12739597 ~ 12761128 (+) True si:ch211-57n23.4
XM_043218397.1 mRNA upstream 206957 12728466 ~ 12736517 (+) True crtc2
XM_043217523.1 mRNA downstream 402 12952457 ~ 12973516 (+) False nfyc
XM_043217528.1 mRNA downstream 402 12952457 ~ 12973516 (+) False nfyc
XM_043217522.1 mRNA downstream 411 12952466 ~ 12973516 (+) False nfyc
XM_043217527.1 mRNA downstream 411 12952466 ~ 12973516 (+) False nfyc
XM_043217521.1 mRNA downstream 3518 12955573 ~ 12973516 (+) True nfyc
TU195256 other upstream 1419593 11522266 ~ 11523881 (+) True LOC122323782
unassigned_transcript_2194 other upstream 3015001 9928400 ~ 9928473 (+) True trnai-aau_70
TU194625 other upstream 3304513 9636973 ~ 9638961 (+) True G131801
TU194607 other upstream 3404981 9536415 ~ 9538493 (+) True si:ch211-215i13.3
TU194520 other upstream 3779402 9160391 ~ 9164072 (+) False LOC122323856
XR_006247120.1 other downstream 352951 13305006 ~ 13305144 (+) True LOC122324249
TU196534 other downstream 1835489 14787544 ~ 15212430 (+) True G133066
TU196550 other downstream 1882582 14834637 ~ 14837952 (+) False LOC122323257
TU196586 other downstream 2197249 15149304 ~ 15187839 (+) False LOC122323518
TU196623 other downstream 2404685 15356740 ~ 15361845 (+) True anxa14

Expression Profile