RNA id: XM_043217736.1


Basic Information

Item Value
RNA id XM_043217736.1
length 5022
RNA type mRNA
GC content 0.48
exon number 7
gene id lrp12
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 3840241 ~ 3852009 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaagagagagggatgtTTAGAGGGGGAAGGGGTGGTTTCTGGTGGTAAATACCCGGCTGTAACAACACATACAACCGATCGGAAAGGCCAAAATTCGGCTTGTGGATTACAGTCGGGGGAGCAGGCGATCATGCTATCGATTAAGCCCGATGTCTAGTTGTATTTGCGGCATTTGATTCGGACATATTTTAGTTCGTGCCATCATGCTGTAGATCAGCGTGTGGCTATATTCGTCTGGATTAGGGCTGTTTAACACCTTTAAACTCTCGGAATTAGCGCTTTCGCGTCGGATCATCGATAGATTAGTGTTGATCTCGTCTCAGGCTTTTAAGgacattgtttgtgtgtgttttacaggagCTCGTGAGCTAACAACAAAAGCGCTAGCATCGCCGGCTAGTCAATTACCGGTGCCTTTAGCCGTTTTATAAACCTATCAGTGATGGACGTCGGGAATGATTTAGCTGGTTTAATAATTAGATAAACGCGCGTCTGCACTCAGAGGTTCATTAGATGAATCGATGAGTTTGATATCTGTAGGTTAGATTAGCGGTGTAGGTTGACATTAGCATTAGCCTGTTAGCATCACAGCGACTCCTTTGTTGAGAAGGCTGATTGAGATCTCAATCACTTTCCTTTGTTATTGAGGAGAATTTAGGTTTTCATCCAGCCGCATtggttgttttattgtttatatctTACTGTCGTTTGTCCAAGACGTTCGTTTGACTaacatcagtgttttattaagATGGGAGCAGGAAACGAAAAGAAATGTTGAACAGCTAACTTAGTGATTCTGGTAATATTCGCCTATAGAACAAACACGGATATTGTGTATAAATAACGACACCGAAGCTACAGAGTAGCGCATTTGATCGTTTATAGCTAGTATGGCCTACACTTCGAGCTCAAAGAAGATCAGTTTGCCGTGGACACATCTACTCTTCATTTTCATGGgaaatGCAGTTTCATCGCAGCACAGCGAGAACGTTTATGTATCAGGCATGTCAAACGCCTGTGGTGATGCAGCGGAGCAGATAAGGGCGTCCAGTGGAGTGATAACCAGCCCTGGCTGGCCCTTTGAATACCCTTCTCACATCAACTGCAGCTGGAACATCAGGGCCAACCCCGGAGAGATCATCACCATCAGTTTTCAGGACTTTGAAATTCAGAGCTCGCACCGATGTGGTTTGGACTGGATCTCCATTGGAACCTATAAGAACCTGGATGGGTACCGGGCCTGTGGCTCGTCTATTCCGGCCCCATACATCTCCTCTCAGGATCACGTGTGGATCAAGTTTCACTCTGATGACAGCATGACTGGAAAAGGCTTCAGGCTCTCTTACATAACAGGGAAATCGGAAGAAGCCAGCTGCAAGCCCGACCAGTTCCACTGCGCTAATGGAAAGTGTATCCCAGAGTCATGGAAGTGCAACACCATGGATGAATGCGGTGATAACTCGGACGAGGAGTTGTGCGTACAGCCCAATCCCTCCGCGTTCTTCTCCTTCCAGCCTTGCGCCTTCAACCAGTTCCCTTGTCTCTCACGCTACACCCGTGTTTACACCTGTCTGCCGGAGTCGCTCAAATGTGACGGCAGTATTGACTGTCAGGACTTGGGTGATGAAATCGACTGTGACGTGCCCACTTGTGGTGAATGGCTGCGCAATTTCTACGGTACTTTTAGCTCGCCCAACTATCCTGACTTCTATCCTCCTGGAAGCAACTGCACCTGGCTGATCGACACCGGTGATCATCGAAAGGTTATCCTGCGCTTTATGGACTTCAAGCTGGACGGCACAGGCTATGGAGATTATGTTAAAGTCTATGATGGACTGGAGGAGAACCCTAGGCGTCTGTTGCGAGTGTTGACTGCGTTCGACTCTCGAGCCCCTGTAGCGGTGGTTTCATCTTCAGGACAGCTTCGGATACACTTTTACGCTGACAAAATCAATGCGGCCCGAGGCTTTAACGTTACATACCAAGTAGACGGTTTCTGCCTGCCGTGGGAGATCCCTTGCGGAGGGAACTGGGGTTGCTACAATGAACAACAGCGCTGTGACGGCTACTGGCACTGTCCCAATGGCAGGGACGAGCTCAACTGCAGCAATTGCCAGGAGGACGAGTTCCCATGCTCGCGAAATGGTGCCTGCTACCCACGCTCAGACCGCTGCAACTACCAGAACCGCTGCCCGAATGGCTCCGACGAGAAGAACTGCTTTTTCTGCCAACCTGGAAACTTCCACTGCAAGAACAACCGCTGTGTTTTTGAAAGCTGGGTGTGTGACGCGCAAGACGACTGCGGGGACGGAAGCGACGAGGAGAGCTGCCCGGTAATCGTGCCTACGAGAGTCATCACTGCCGCTGTAATCGGGAGTCTGATCTGTGGCCTGCTGCTGGTCATTGCTCTGGGCTGCACATGCAAACTCTACTCACTCAGGATGTTTGAGCGTAGGTCATTTGAGACTCAGCTCTCTAGAGTGGAAGCTGAGTTACTGAGAAGAGAAGCTCCTCCATCATATGGGCAGCTGATTGCTCAAGGACTGATTCCCCCGGTGGAAGATTTTCCGGTCTGCTCTGGAAACCAGGCATCTGTTTTAGAAAACCTAAGACTGGCAGTTCGCTCTCAGCTGGGATTCACCTCAATCCGACTCCCCACCACAGGGCGCCATGGCAACATCTGGAGACGCCTGTTCAACTTCACCCGTTCACGGCGCTCTGGTTCTCTCGCACTGGTGTCTGCAGACACAGAAGAGGGTCCTGATGGCAGCACCTCAGCTCGTGAGCCTGAACGGCTTGGCTCTCACCGTGGACTCTTGCCCTTGGACTCCGACGATACAGACACTGAGAGCGAGCAGCATTCCCGCAGAGATGTCCCAGGAGCTGTTGGAGGCCTGATGGCCCCACTGCCACAGAAAACTCCCCCTACCACAGCCGTGGAGGCCATCGTCTCTGTGTCTGCCAGCTCTGCACCACTCATCAGCAGGGAGAGCAGCATCTCTGAGAGCATCTCAGAAAGTTCTGGAGTAACTGGATCTTCGTGTACTACTACTGCAACTACTACTTCCTCGAGAAGCCCCTTCGGCAGCGCTCTAAGCCGGGTCACCCGCAGCCTACGCTGGATTCGTTTCTCTCTGGGCCGCTCTGGAGACGGCGGGTCAAGTGGCATCGGGCAGAATCACAGCCCTCTGCGGCAACTGGAGCAAGGAAGTGTGGGTTGCACTGGGGTCGGCATTAGAGGCGAGGATGAGGACGACGTGGAGCTCCTCATTCCCGTCTCGGATGGCGGCTCCCTGGACAGTGATGAGAGCTCCAGGCCCCTGCTGGAACAAGGCCTGGAGCAGGCCTTCGGGCCCCACCTGACCCCCACCGCAGTCTCCCTCAGAGGCCGGCTGGTGGGTAGGGACGGCCCCTGTGAACACTGTGGAATTGTCCATACAGCGCGGATCCCAGACGCTTGTCTGGAGGCGACAGCCAAAACAGAAACAAGCGATGACGAGTCACTGCTGCTCTGTTAAGACTCCCAGACTCGGTACATGACCCATATGACTCTAAAATGCCCCCTGCTCGCAGCTTGCTATTTCTGTTATCGCCCCCTAGTGGAGCGGAGGTGTGAATGTCTTCAGACAAAATGAAGAGCTTCAGAAATCAGGTACTTTTAAAGAGAAGTCTGTAAAGACCATACAGAGTACGAGAGCTCCCCGATCCCACGGTCCCTTCCACTGTGCAATATTAGTATTCGTTGAGATGTTTACCAGGTCAAAGTCTATTTTTCTGAAGAGTCCAATTAAGCTCACGTGGAGTCGAGAGTGAGCCGCTCTGCAGTTCTCTGTATGGGAAAGCAGCACAAACAGACGCGTCTATCCTGGACAGTGTGGGCCAACAAAAGACTGAACACATACGAGCGCTCTGAGAGATTTGTTACCTAacctttaatttatttgtacttttgatgtcagacttttgtttttattaaaggaacagttgacccaaaaatgaaacgtCTACTACCCTAACGTTGTTCCAGACGTGGTTTCTTTTGTACAGTTGTTGTGAAAGGTGTCCTAGCAGCTATTTTCTGTACAGTGGAAGTGAACAGGGCTCTCAAGCATCAAAAATAAagcttcacaaaaatattacgtGATCCATATAAGCTTCGTTTTGAGGATTTTTAAATTCCGTTTCGAAAATTTCACATTCACCGTAGTTCTCAAATCCTTTTTGCACACGGCATATTACGGTACATCGTGTTAGATATGACGTTTTTGGTGATTAACGATAGTTATGCAGAAGTCATGTGGGCTTATTTCAGGGCTCTCTTGTGTTAACCGTTTTGTAGTGTAGTTTCACTgtgtggaaaagagcagctgGGACATACTGCAAAGTAGCTCAAAGCTTGTTTGggggtaataaaaaaaaatactcctaaataaaagcaattttatatttttatgataaaatcacgcaggtttggaacagccgAGTACATGAGAGTTTTCGTTTTGGGTAAAAATGATTCTGCTTGCAAAAAGTGGGAGATCAAAGATAATTTGGTACGTTTGTTCATTTCAGTATGAGTTTGTGTCCCTGCTGCGGTGGTACTTGGTGCATTACCTGCGATTTTATGAGCGAgggacatttatttataacagatTATAATCTGAGAGGGAGCTACTATTTTTAAAGGATATTGCATTGTATAACAGCCActtttgtttgttgtatttatttttttgttaccgTTAACCTTTTTGGTAACCTTACTGTTTTGGTACTGAGAATtcttgtgtgagtgtgtatatttattattggttttCATTTCGATAGCGTTTTACTTGAAAAGCATGTCCAGCTGTcttgtgcttatttttttccatttcatgatgcggtgttaatatatatatatctatataattatatacacgcatacacaaacatgcaaaagatatatatatatatataaagataaaaagaaaaatgtctacTGCACTAAGAGAATAAAAGAGTTCATCCCACTTG

Function

GO: NA

KEGG:

id description
K20050 LRP3_10_12; low-density lipoprotein receptor-related protein 3/10/12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192190 lncRNA upstream 264051 3572274 ~ 3576190 (+) False sh3bgrl3
TU192143 lncRNA upstream 298847 3465239 ~ 3541394 (+) True G130150
TU192360 lncRNA downstream 46052 3898061 ~ 4076098 (+) True G130313
TU192366 lncRNA downstream 78204 3930213 ~ 3935051 (+) True G130315
TU192369 lncRNA downstream 93386 3945395 ~ 3964718 (+) True G130318
TU192394 lncRNA downstream 298668 4150677 ~ 4160027 (+) True G130336
TU192396 lncRNA downstream 324259 4176268 ~ 4199257 (+) True G130338
XM_043217650.1 mRNA upstream 160868 3623775 ~ 3679373 (+) False epb41a
XM_043217641.1 mRNA upstream 160868 3627124 ~ 3679373 (+) False epb41a
XM_043217651.1 mRNA upstream 160868 3631071 ~ 3679373 (+) True epb41a
XM_043217640.1 mRNA upstream 160868 3631071 ~ 3679373 (+) False epb41a
XM_043217645.1 mRNA upstream 160868 3631071 ~ 3679373 (+) False epb41a
XM_043217925.1 mRNA downstream 7455 3859464 ~ 3862610 (+) True LOC122323814
XM_043217926.1 mRNA downstream 11219 3863228 ~ 3891965 (+) True LOC122323815
XM_043217928.1 mRNA downstream 197901 4049910 ~ 4053157 (+) True LOC122323824
XM_043218200.1 mRNA downstream 349224 4201233 ~ 4210130 (+) True LOC122324024
XM_043218108.1 mRNA downstream 445239 4297248 ~ 4302229 (+) True fam210aa
TU192216 other upstream 79256 3759867 ~ 3760985 (+) True G130208
TU192043 other upstream 746527 3093067 ~ 3093714 (+) True G130077
TU191970 other upstream 861825 2970687 ~ 2978416 (+) False phactr4a
TU191942 other upstream 946749 2889689 ~ 2893492 (+) False serinc2
TU191918 other upstream 1053893 2785925 ~ 2786348 (+) True G129993
TU192476 other downstream 392759 4244768 ~ 4259085 (+) True G130372
XR_006247039.1 other downstream 542576 4394585 ~ 4406579 (+) True ptpn2b
TU192559 other downstream 607906 4459915 ~ 4464904 (+) True znf706
TU192560 other downstream 607906 4459915 ~ 4464590 (+) False znf706
XR_006247113.1 other downstream 631691 4483700 ~ 4490450 (+) False pabpc1b

Expression Profile