RNA id: XM_043217740.1


Basic Information

Item Value
RNA id XM_043217740.1
length 9822
RNA type mRNA
GC content 0.39
exon number 5
gene id si:ch73-347e22.4
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 17072331 ~ 17083543 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aattctaACGATTAACATTTAGaacttttaaaagtacattttaaaacgatTCTGCTTTTGATTTGATCAAACATCATTATTTCTCATTTACCCATATTACACATGACGATATATTTCGTGGGTGTTTCCAATACTATGATATAggaatatttaacttttatgcACTCGCAGTGCAAGAGCAATAACATCCCGAGAAGTGTCCCACGCCACACAGACCTCTCAGTCTTCCGGTCTATTACGGATGTTGTGTTTGGATGTACCAGGACCCCACAACAGACCACCACGAGGAGCATAAGCAGATGcgttaaataggaaaaataattaCACGACACGGATATTCACACCGTTGCAACTCTCTGTGGCAAATGGACATGCTCGTAATAACCAATAATACATGACCGTGCGCGAGCCAGGGATTAAGCACGCTGACCACATCGGCGTTTCATAAGAGCATTTTATCTCCAGGAAACCATTTGGGTACCATGGATGGTGAGTTATCACCATGGAATAAACATGGAAGTGATACAACAGGGGAACGTCAGGAGGAGCATAACGTGATAGGAGACGGCTTTGCTGCTGGGGAACGAATAACACCACTGTCATCTTGTACGAGTGGTGCATTTAAGGCCTTGCTACCAGATTACCATGGAACTTCTTTAGCAATGTTAACAAACTCTGATAAATATTCCTATTCTCCTGAAAATCATTGTTTCATCAAACCTGGCACTGCAGTGGATGAAAAGATAGCAGTAGAGAGAAGGgaagaaaaatttttttttaaagaccctTTGGGTAAAACATTAGCTAGTGCCACACATATGCTTCCTCTCAGATGTGGCGAATATGTGACACATGAAAAGAATCGAGAAATGGACCAGGGGAATGGTAATTGGACATCAGTGATCAAAGATGCATTAGAAATGAGTAACGGAACGGAAATGGAACAGACTTTATCTATGAATGAACGTGGCCCCCTAATGGACTATAATCCTATATATAAAGGATCTGAAACTGAGGCAAATTTTAGATTGAAGGACAACTTTAAGATTGCAGGATCCAAACTAAATGAGAAGATGGATGGGCAAGGAGTAAAAAAAGAATCGGATTCCTTTATTTCAGTGTTGTCAgatgacattattaaaaacaaaggtgtTTTGGAAATGGGGAAACATGAGGAGCCAAGCGTATTAGATGTTGGATcatctttaagaaaaaaaaaggaaaatggaaTTACTGGAATCGGAGAACCTGGATTGGACAGGAGTTCATACACTcctttttcttcatcagaagaTCTTATGAAAAGTGAACAGTTTCCATGTAATCCTCTGGAGAACCAGTCTGTTGATCAGACCCTTCAAGTGTGCAAAGATGTTAGTCCTGAAAAAACTACCACTATGTTTAAGCAAGCAGAAgtaaaaaatgaaactgaagGTTCTATTGTATATGGTCATCATCCTCTTGATCTTCAAAAAGGCTGTCACCAAGCAGAGGTTACAGATGGAAAAACTTCAGTCAATTCTCAGGATCATTCCTTACAGCATAGTGTGCAAGATGAGAGAGTAAACACAAGCAATCCGCATGTCTCCGGGACTACAGTAATAAAAGAGAATCCTGCATATCTGCCCAACAGTCAGTACTTTAGCAGTAagctaaaaaaacaagtttatgATCTTGTACCCACTCCAGCCTCAGTGAGCAGTCAAAACACAACTGAGGTTGAACGTGAAAACCTAAAACTGCTTACCTCAACAGAAGACAGGATCTCTGAGAGTAGTCTACCTGTGACAGGAAACAGTAAAACTACTGATATCCAAAAGACATCTATTAACACAAAAACTGAACTTAATCAAAAGGTAGAAACAAAAAATTCTCCTGAAATTCAGAACTCTTCTTCAGTATCAGAGACGGTTCCAGATCTATCTGCTGTACCCAATAGAATTCACACTGATTATGAATGCAGAGATTCTCAGTTTGAATCAGTCAAAAGCAGCAACTTAAATGAGCTTTGTTTTCAAGAGAGCAGTTCAAAAAATGCGACACTGACACTTACTTCATCTTCTGTGCTTACTCAAAGAACTGCAGATGAATGTGATATTCATGTCCAAGAGAAACAAACCCCAATAAGTCCAAGCACGGTTTGTCTGCCTTGTAACGAGAATGGAAAAAACTCTGAAAGAAGTGAGAAAGTACTTCTCAACATTACTTCACAAAGCAGTATTTCTCCATCTACTGAGAATGTTCAGGAAGCTCCACCTTCTCCCAAAAGGATGGACTGCTCCTCTCAGCCTGTCTTACAGAAAGCGTTGCTGAGCCCtaagaaagcaagaaaaagaaaacaaactgagCTTGAAGCATTAAAAGGACCAATATACAAATCTAATAAAAGAGATGACTGTTCTATGTATGTATCAGAAGTATTAGACAGTACTGTGAAACTAGACAAAACAGGATGTGAGAAAACTAATCAAAACACTGATCATGACACCACTGAACCAAAACAGGAGGACTTAGTAACAAATGGTGATGTAAACCCACCTTGGAAAAAATGTCAGATGGCACAACCTGAACTACTTGGAGATACAGCAGAGACCTCACAAAAGCCAGATCATAGCTGTTTTGGTGCTTCACAGGAAGAAGTACCATCAAATGCTAGGATCAACAAGAAGGCTACTTCTAGaaagaaactgaagaaaaaaacaacgcTACATTTAAAGGCAAAAGAATCCGCTACCTTTGGCAACCAGTGTTTGTCTCAAAGCACTGTCTTGTCCCCTGAAGAGGACTGTAAATCAGATTTTCAGGTCAGTGACACAACTCCAATAAAAGGAGTAAGTAATCCAGCAGCAATGGAACATGCCATCTCTAGTTTAGAGTCCATtccagaaaaaatacaaaaatccaTGAAAAAGACCACAAAGCAAACACTACAAAGCAAAGATAATCCACACAAAGATGTGCCCACAAGATTTTCAGAAAGTGAGGCAGACGTGGATGTCAAAGGGCATCAGAAGGTGAGAAGATTTCCTTTCAAGGCTTCtaaaagaaagaataagagTGCAACCAGTCTGCTGGATAGGCAGTCTTCACAAGATTCTGAGGGTCAAACAGTTTCAACCTCAGTGACTGAATCTTTAAAAATTCTAAGCCCTCAGAATAACCCAAAGAAATCAAAGGAGAAGACAAGAATGCATATCAACAAACCAGCAAAAACACCCAATGTGTGTCCACAAGAGGATATGGAAAACGTGATGACtcccaaaacaaaaactgttaaagCAAAAAGTCCTCTAAAAAAGGCAACTAGAATAGATGAGAGTGAAACTACTCTTTCAGATACACAGCCTTGTACAGCCACTGCTAAACAACCAgattctgtttttaatgtagTAAATGAAATTGAGTCTCTCAACACACCAAGAAAGTCGctgaaaaataaattgtcaCATATTAAATGTGATGCAATACAAGTGCCTGTAGTTAACCAAACAACAGCTCAACAAACTGTTTTGAATGCGCCCTCAGAATCTAACATTGTGCAGCCAACTACAAAAAGATTCGGAAGAAAAACActtgacaaaaacatttctcatgaCACAGTTGGTGAGAACTGTGAACCTGATCATACAACTCTTTCTTCAGTTGATTCTGTGTATGTTACAGAAACTGACTTTTTGGGTGTCAACCAACGGAACACAGAAAAGACATCAAGTAAGAGGAGAAAGACAGACATTAAGTTGATAGAGGCACCATCATCCACTACTAGCCAGCAGGACAATGTCACTTTACCATCCTCAGAAGATTTTTCATCTATTGTGGTTTCAAATCCAGAAGAGACTGTGAAAGCCAATGGATTTTCTAGaagcaaaacaaatgacaaCCACTTATATGGTAATTTGATTGAAGAAAAATCTTTATTAGCAACTGTGACACAAGAAAGTTCTACTTTACCTACAAAGATTGAATCTTCAAGCTGTTTTAAACTAAGCAGCACACTGAAAAAGACAAGAAGAAACACTGTAACCAAAATCAAAAATGATGTAGCAGAAATACTTGGTGTAAACCAGCATGAAGATCTGGCTGCAATACCCTCAAAATCTGATGAAAACATGGTAGCCTCCAGTTCACAAAtgactttaaaagaaaaaacgatTGTGGAAAAGGCCATTAGGCAGGAAATTAAAGATGACAATTCAGTTCAACTTTTGAAAATGCCAGCTTCTACACTCACTCTGCAGCAAACAGAATGTCTTTCAACTTCAGTTCACAGCACAGCAACAAAATCTAAGAAAATGTCTGCCATTAAATGTGAAGTAGTACATACACCCTCAGCAGACCAAACAATGGCACAAGGAATCCATCCATTGGATTCTATATCAGCCACAAAAATTACTAATTCAGATGTTCTCAAACAAAAGAAGACAAAGGTAAAGATGAAAAAAGAGCCTAAAAAGGAGTCCCAAGGAGCCAGCGATTCAGTGTCAAACAGAAAGACAAATTCAAGGTCAGAAGACATGacaaagaaatgtgaaaaaaagagaacatcGTCACTGGAAGATCAAACAAAGGATGTAGATCTGCCATCAACAGTATCTCAGAGTAAGGATGCAACACAAGACCCCTGCATAGAGACATACAATGTAAATGAAACAGCTGAAAGTCATGTTGAAAACCAGGTTTCTATCACTACTAAAGATGTTGCCAGCCTTCAGAGCTCACCGAAGGctgcaaagaaaacacaaaacaaacaacaaatgagaaacaagaatgaaaaaagcaatattCTAGAGCTGGCTCACAGAGAGGATAAAATGTCAGATTTACCTTCTGTTGTGAGTGGGGTAGTCTCTGAGAATTCGGAAACGGACAGCTGTAATCAGAATTTAAAGGTAGttaaaaagaaatccaaaaaatCCATGGAAATTGCAGATGGATTTACtaatgtttctttctctcaagAGAAAACTACTGGATCAGATGAGGCAGGTGTCATGTTTACTTTAACACAAGTTGCAGATTTATGTAAACTGCCTGATAGTCAGACCATAGGATCGCAGCAGTCTGAAAAAGATGATGCTGTGATTAATCAAAAAGACCTCAAAGCCACAAACCCTCCTAAGAAAAGGGGTAGACCTGGACGAAAGAAGAGGAAGATGGCTTATCTGTTAACTCAAACAGAGGAACATAAAGATATATGTTCTGACAACGTAATTACTTCTGAttttcaaaacaacacacaaattaaaatttcagaaaTTTCACAGAAGAGTATAGACATTCCTGAAGAACCAGTACTGAAATCAAGAAAATCAGCAAGgacacaaaaaataaactcagGTCCAGTTGTTGAGAATTTGTTAACACACGTTAAGAGCAAAGTCTCTTTAGACATCACTGGGTGTCACACAACACTTGGAGAGACACTTTCAAATTCCACGCAAAGTGCTGATTGTGAAGACCAATACACCGTTGAGAAAAAGATACCAAGACGAGGAAGACCACCTTCAAAGAAAAGCAAGAAACAGAAATTATTTGTAgcacatttagaaaaaaacacatctacATCTGTCCAGAAATCAGATCTCTCTCTATGTCAAGACAGCACAGAAGATACTGTCAAAGCAGCTGCAAGTCCAAATGATACagataaaaatttaattgttacTAAACAGTGTGGGACTGATACCTCTGAATCCCTTCAAAGTGCTAATGCTGTCTTGTTACACAGCATCCCTATATCTGAgcttaaaaaagagaaagacctcAAAAGACAAACAAGAGACCAAAAGTTAACAAGCTTGAGAGTATCCAGCAGAACAAGTTTAACATTAGTCAAAGGTTTTCAAAAAGCAGACATAACTTCCCTCCCACAAAATTCCACAGATACGTTTAATGAGGAAGGAAAAACATCTTTGCCTGTGTCTAGGACAATGAagaaattctgagaaaaaactGCTACACAAGATGGCATTGTGTTGGCAGATATAAAGACAGAGAATAAGGCAACAGTTAAAGTACTAAGGGGACGAAAACGTGGTCGGAAGAGACGAAACGTTAAAGATGGAGagcttcaaatattaaaaacacaagatGCTTGTGAACCAGCCAAAGGTTTACTGACAAAGTTCAGTATGACCAGTAAATGTCCCACTGAGGACCAAAACATAGTCACACCCAAAAAAAATGATACTGACGAAATCAAGTCAGACAGTGTTGAAATGATTCCACCAATAACTGCAGGGACCTGCAAGATAAAACCAAAAGCAGAAATCTTATGCAGTTTTCCCAATGACCTGTCctctaatttaatgaaaaaagtcaAGAAGTGTAAAGTAGAAGAACACAGTGCTGAATCGAACAGAAGAGATTCATTAGAGGACCCCTATACTGATAATACAGGAGTCTCAAGAggaatatgtaatttaattcttaGTAATGTGGTCAAGGATGAGTCGGAACAAATTTCTCTGGATACACAAATGAAACCTGACATTGAGTTGAAATGTACTCAGGAAGCAGATAGACTAATTGTGGAAACGTCAAGGAAAAAAGTACTTGATATCCCACTAAAGACAGAAAATGCACTCCAGCCTTCTACAGAATGCAAGGAGGATAGTTTCACACAGGATAGTGAAGACTGTGTTGTAATGGCAAGAAAAGTGACTAATAACTGGACAATAAGATCCAAACCTAAAGAAATAGTGAAGAAACCTCTCACCTGCAAATACTGTGAAGTTTCCTTTCGGCATATTACAGCATATACCATTCATCAACGTGTTCATACAGGGAACAAACCCTACAAATGCAAGATCTGTGGGAAACCCTTTTCTCAGTTGTCTAAACTGAAGTCTCACCATAATGTACATAAACAGGACACATCTTTTCCTTGTCCTTGCTGTAACCAAAGGTTTTTGCAGAAAGATGATTTGCTATCTCATTTTAAAGTTCACCTACAGAAATCAGAAGCAAGCAGTGAATCACAGAAGCAcataaagaggaagagaaataCTTCATCAAATGTTTCTTCTAAAACCCACCAAAATTATGGGTGCCTTATTCGCAAGAAAAAATTTGTGAAAACGTCAAATTACAGGATCACATGCAAGTGCATGAAGTGGAGAAGCCCTTTACTTGTAAAGGCTGTGGGAAGGCATTTTGGAAACAGTCAAGCCTCACAGCTCATGAAAAAACCCACTGGCCTGTTAAACCATACGCTTGCTCGATTTGTGGAAAAGGCTTTAACCAATTAAAAGCCCTAAAAAAGCATTCTCAACACCATGCTGGTGAGACACCATTCTCCTGCTTCCACTGCGGTCATGGATTCAGTGCCCTATCTGCACTAAGGATGCACCAAGCATCCAAAACATGCATCGCAAGGAAAAATGATGAGGAGAGCAATAACATTGAGGGCTTCATTGTAAGTCAAGGAATTGATGGTCAAGTGAACACACCAGTATTCTTTAAGTGTCAAATATGCAAAGAGCTTTTCAGGAAATGGTGCCAATACACTCTTCACCTTCAGACACACACCAGCTATCCcccatatatttgtttttcatgtggACAGTGTTATGAGAAGGATTCAGAGATGAATGTGCACTGTGAGGTTTGTTGCCTATCAAGTGGGGAGGAGAAGATTTGTGGCGCATCACTCACTGAAATCATGCAAAGTGTTACCCATATCTATCCTTTAAGGAGTACCTCATCTCAGAGTCTACCAAGTATAGGATTTCAGCTTAATTCCCAAACACAAACCAGCTCAGAACAGCTCCCTCATCTGCCTCAATTGATGGATGTGGAACCTGCACAACCAAGAGATGCAGATCCTTCAAAACTTCCTAAAAAATATTCTGCTCTTTCACCCATCAAGCTCCCAAATGCCCAATCACATGGTCATTCTGATGTTAACTATACTTCCCCAAATGGCTCtctaaaatgcattgaaatcaCTCAGAGTATTTGTAAATTTAAGTGTTCACGTTGTGGTCAGCGATTTGAGAGGTACAGGGATTTGAGTGCTCATCTGCAAACGCATGCTCCTGGTTTCAGATATACTTGTGCACATTGTGGGCAGTTCTTTGAAAGGTGGAGTAAATTATGGCTACATCAGCATCGTCATCGCCTAAAAAGCCGTTGTTACTCCTGTGCGCAGTGCAATCTACAGTTTCGTTTCTTTAGCTCTTTTCGAGAGCATATGATTGACCATGCCGGGCAGAGACCATATGCTTGTCCGCTCTGTCCCAAAACCTTCATTCAGGAGGCAAGCTTACATGCTCACCAATGTGAGTCTCATAAACTTTGTAAAAGTCTGAAATGTGATGTCTGTTCTAAGACTTTCAGTAGTTTAACAAACCTAACTAAGCACGGTCTTCTGCACAATGGTTCTACCTCTCACATTTGTCTCCTTTGCAATCTGTCATTCACAAATACAAgagtcttaaaggaacacttaaAAACGCACACCACCCACCATGGACGGGCCCTCCCTGATATTCCATCAAAGCCGCTTGATTTTCCTCACAAGTGCAAAAGGTGTAAAGCTAGCTTTTCAACTGGAGATTTGCTCTACGCTCATCAGATATGCCATTCTCGAGACGCAAAGACTCATATCCGTCCAGCAGTATTACCTACCTCAAAATTGTCTGATTCTTGTAAAGACACACCATCTACCCCACCTTCCACTCACAGGAATCATATATCAAACCTCAAACTTGATGGCATGCCAAATGATGACAGCCTGTATGTTTATTCCCACCCTGACAAGCTGTATGTGTCCCCTAGTCGCAGAGTACAGCTTCCAGTAATTAATTTGGACCCTGATGAAAGAGAGGTCTCAGACTCTCAGAATCCTGGTCCTGAACTTCCAAATAGAGAAATCACTTCTCAATTTGACAGCACACACCTACCTCAGGCCACATCAGTTCAGGAAACCACCAACCTAAAATCAAGTGAAAGCATAAAGATGATGGTAAATGGTCAACGTAATTATAGCTTCAATTGTCAGAGAAGCCCTACATTTGTGGAGACAAGTGTTGACATGGAAGTAGAACATCCTACTCAAGAAGAGTCAGAGGAGAGTTTTGAATGTGCAGACTGTACTGAAAAACTAACCAGTGTGTTAGGCCTTTATGAACATTACATACTTCATGCAATGGGAGATGCATATGTACAAGTACACTGATCATTGATAAATCATTGTTAAAAGGTAGACATTTTCTGCATATATTATgctttgaaatgaatgttttgacTTGATGACACTTATGTTTTAGAGTTccaaacaaatatttgtttaaaaaaagtgctcataaaaaaaagcattatgacTCTTCATTCAACGCTTTTTCAACCCTCAGGTTTCTTCAGTTTAAAAGTAGTTGTCCACTAGCCACTCTTAGATACTGTATTACCGGGGTCATCATTATGCCTTACCTCAGTTATCTCTGTATTGCCATTTGTCATCTTCTTTTGTGCCTTCAGCGGCAGTTTTGGTTATGTAAAAGAtttgtacatacatatacataatccTATATAAACTCCAAAACCTTCTAATCCTTACTCTGTAAAAATCTAACAGTTGCATTTTCAACaccttttaaaattcagttttgtaatATTGAGAAGATGTTAAATGTAGATTAACCTTGAACGTTCATATATGAATGTCTGGCTGGGACACAAATATAcagtttattgtaaaaaaaaatgtgtagaaCTTGAGAACATTAGAATATTTCTGGAAAATAATGGCTtcaaaaatgatctaaaaagaTTCTATGCTTTTAAGTGgattcttgtttttaaataaaacatgctaatTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197750 lncRNA downstream 15464 17056425 ~ 17056867 (-) True G133887
TU197749 lncRNA downstream 16020 17056101 ~ 17056311 (-) True G133886
TU197725 lncRNA downstream 30538 16974031 ~ 17041793 (-) True G133865
TU197719 lncRNA upstream 44123 17127666 ~ 17131995 (-) True G133861
TU197773 lncRNA upstream 80289 17163832 ~ 17164115 (-) True G133902
XR_006246988.1 lncRNA upstream 81151 17164694 ~ 17167102 (-) False LOC122323277
TU197774 lncRNA upstream 83482 17167025 ~ 17168108 (-) True LOC122323277
TU197779 lncRNA upstream 131152 17214695 ~ 17215112 (-) False LOC122323474
XM_043217136.1 mRNA downstream 20712 17048539 ~ 17051619 (-) False si:ch73-347e22.8
XM_043217135.1 mRNA downstream 20815 17048539 ~ 17051516 (-) True si:ch73-347e22.8
XM_043217318.1 mRNA downstream 29342 17041975 ~ 17042989 (-) True msmp2
XM_043217990.1 mRNA downstream 106216 16959151 ~ 16966115 (-) True si:ch73-109i22.2
XM_043217989.1 mRNA downstream 106222 16959151 ~ 16966109 (-) False si:ch73-109i22.2
XM_043217746.1 mRNA upstream 367 17083910 ~ 17085916 (-) True apoea
XM_043218462.1 mRNA upstream 3880 17087423 ~ 17088750 (-) True apoa4a
XM_043218461.1 mRNA upstream 7076 17090619 ~ 17094505 (-) True tomm40l
XM_043218418.1 mRNA upstream 11991 17095534 ~ 17104511 (-) False LOC122324173
XM_043218420.1 mRNA upstream 11991 17095534 ~ 17104511 (-) False LOC122324173
unassigned_transcript_2205 other downstream 171555 16900705 ~ 16900776 (-) True trnap-ugg_15
unassigned_transcript_2203 other downstream 173730 16897995 ~ 16898601 (-) True LOC122324115
unassigned_transcript_2202 other downstream 175188 16896108 ~ 16897143 (-) True LOC122324113
unassigned_transcript_2200 other downstream 179750 16891692 ~ 16892581 (-) True LOC122324112
TU197682 other downstream 181465 16890153 ~ 16890866 (-) False LOC122324114
TU197783 other upstream 134245 17217788 ~ 17218749 (-) False LOC122323474
TU197841 other upstream 199789 17283332 ~ 17284744 (-) True G133949
TU197840 other upstream 247154 17330697 ~ 17334234 (-) True G133948
TU198224 other upstream 529937 17613480 ~ 17616238 (-) False LOC122324164
TU198368 other upstream 846146 17929689 ~ 17935436 (-) True s100a10a

Expression Profile