RNA id: XR_006247052.1


Basic Information

Item Value
RNA id XR_006247052.1
length 3600
RNA type transcript
GC content 0.48
exon number 11
gene id khdrbs1b
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 8118949 ~ 8129270 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCTTTTGTTCATCTGTTTCTAGCCCCGCGCCGGAGAGCAGGAGCCATTGCTACTCAGTCCCCCCGCCGTCGCCTGCGTGTTCGCGCCTCGCTTCGCCTCTCGCAGGAAGTGGATACCGAAATAGTTTCGCCCTCGGACGTTTGGTTTCTAAACCTTCCTCAACTAAGAAACTCGACATGGAGAACGAGAACAAATACCTCCCGCAGCTGCTGGCGGAGCGCGACAGCCTGGACGCGTCGTTCACGCACGCCATGAAACTTATCACAGCAGAAATTGAGAGGGTTGAGAAAGGAGAGACTGAGAAAGACACAGAAAGCTATCTGGACCTCTTCACCCAGAAAAACATCAAACTGAAGGAACGGGTTCTCATACCAGTCAAACAGTACCCTAAGttTAACTTTGTTGGGAAGATCCTTGGACCACAGGGGAACACAATCAAGAGACTGCAGGAGGAGACTGGCGCTAAGATCTCTGTGCTGGGGAAAGGATCCATGAGGGACAAAACCAAGGAGGAGGGCTTGAGGAAGAGTGGAGAGCCGAAGTATGCACACTTGTCCATGGAGCTTCATGTGTTTATTGAGGTGTTTGCTCCTGTTCCTGAGGCATATGTGCGTATGGCGCATGCCATGGAGGAGATCAAAAAGTTCTTGTTCCCTGACATGATGGATGAGATTTGCCAGGAGCAATTCATGGAGATGAAGTTCCTAAATGGTGGTCAGGAACATGGGGGCAGAGGCCGAGGAGGACCACCAATCAGAGGCCGTGGAGGTCTTCCTCCTCCTGGAGTACCCAGGGGTCGTGGCATGCCCCCACGTGGTGGTCGTGGTGGACCCCCTCGAGGTGGAGCAGTAAGGGGAGCGCCTGCAGGTAGAGGAGGACCATCAGCCCAGCCGCCCAGAGGAGCAGCTTCCAACCGTGCTCGTCCACCCGCCCCTGCGTCTCAGAGGATGCCCCCTCCGCCACCCCCACACCCTCCGACCCAGGACTCGTATGAAGAATATTCTTATGATGAGAGCTACACAGAGGCAGGCTATGAATCCTATGACAGCTACTACAATCAGCCACAAGCagaaCCAGAATACTATGACTATGGACATGGAGAGACACAGGAAGGCTATGAAAACTACGCTCAAGATGACTGGAATGGGACACCGCGCCCTGCTGGCGGAGGAAAAGCTCCCACTCAGAGACAGACTAAGCCTGGGTTAAGGGAACACCCCTATGGACGATACTAAGTCTGATTAGTGGAACGTCACCCAACGCGTCGCCATGACAACTGTCTCCCATGGCAGCTCACGCTTTAAGCTACCCGACAAAAGTTGTGATGCCTAGCAATTCCTGGAAATTGGAACATTTAATCGAATGTCAGACCTCCTCTCAGGAAAAGACAAGCGTTTATTCGCAGTGTAAGAGCAGTCTTACCTTTGAACACCAGCTGCCTTTAAGGAACCATGGACAGTCTGACTGAACGGCTTCTGAACAGTGTGGAATGGCAGAAATCGATGGCCCTGTCGGCTAAAGTTTGAACCAGCAACCTCTTAATGGTTTAAAGCTTGAGTTCTTGGTGCTGTTTACACTGGCTCTCCAGTCGTAACGCAAGGTCATTTTCTCTGTACTGAAAGTTTCTCTTTACTGTTCACCTCATCAAGTGCTTTCTAAGCATACTTTACTTCGTCTTTAAATTGACTACTTTTGCTCATGTTGGccaagaaatcattttaacaagCTCAAAAAATTCTGTCCGGGCTCTCCAGACGTCTACCTCAGACAATACTCCAGTGCTTTATTCTGCAAGACAAGCATGTCTTCCCCGGTTCCTCGCTCGGAGGAACGTACATGCTAATTTGGAGCTGTCCGGACCCTATCTCTTAGCACAGACTTTGTCCGTTAATTGCCATGGTAATTTTCATTGTGCTCTTGAGTAGATATGTTTGAATGGGTTTGTGCTGGTGGAGCTCTCTTGCAGTTTGTATGAATCACAAATGAATCTTGCGTCTGATGAACCAAGCGCAGAAGGCTCCAGGGCTTTGCAGTAGTGTAGCGTAACAGTTGATCTAaatcatataaacatttttacctTGTGGAAAAAGGTCTTATTTTGTCCTAAATGAGAGCTTACCGTAAACTCTGCTTTTTCTAATGCTCGCTGTGTTTGGCGCTGGGCATGTGTCTGTGTTGCTGTCAGAGTATATCATTGTAGCTTCCATCTCTTGCTCACCCCCTCCTCCCCTCCAGCACACACAGGATTTGAGCCCGTCATTCTGACCAATTACCGCTGCTGACAGTGTGTCCGTCCCCCTGCAGAGCCGCCAGTGGTTGCCGACTGGCTAACAGGACTAATGCCTTATTGCATTAGAGACAAATCAGTCCTCTGCACAGATTTTAATAAGCATCAGCCACCGCTCAAGTGCCATCGAACAATTggaaatgagtgtgtgtgtgtgtgggtaggAGGTTGACCGGTTTGTATGCAGACTTCACTGTAATGAGAAATCGCAAAAGCAGACAatggaaatatttaattcatttcccACACAGATGCTGGAGGGAGGGTAACAAAAACTACTCTCAAGGAGGAGGAAGTGTTCAAACCCACTGTGTGTACTTAATGGCTCTTTGTTTACACGGCCATATCTGTTTGCGTCGGACATGCGTGGCCTACAGCTGCTGGGGGAATGCCTCTGGGGTAATGTGCAAGGCATGTGTGGCAGTCTGAAACTGGGGGATTGTGGCTTGGCAGCTCTTTCCTCTTAACACACATTGTGCATGCTGAAAACAGGAAGCATGGCTTTGCGAATGCAGATGAAATGCAAAACACTTACACCACTGACGGTCTGTCTTCTTGCATGGCTATTTTGCTAGTTTCACACCTAACCAGTACATGCTCTCCAGGGAGTCAGGGTTTTGAGTGCACAGGGAGGAGTTGTGACTGTTTCTGGCTCGTGTCCTGGAGTACTGTGGCCGCTGGCCACCTCCTTTAGTGTGAAATGCTGGTAATAACTAAGCCTCCTAAAGGTCTCTCTCAGTGTGCTctgatgaaaatgaattgaataaATCCATGTGGAATCTGGCTCCAGTAATCCGTAGTCCTCTAGGACTAAAAGTTGGACACCTCCACCTTGGCCGTCGCTAAAGTAACATTCCATTGCATGTTTTCCAACATCCACATCAGCAGACGCACCTAACACAATGTCAGGAAACCATGGGAGTTGCTTGGGATTAGTGATGAAATGCATGTGCTGGGAGTCTGAATTCTTTTGTTTTCCTAAGGAGATTGATGAGCCTGTATTTACAGTGCAACTGAACTGAGTTTGAGCTTATTGAAGTGCCTAGCTGTTGGCCTTATCTCAGTATAAGCAAACTAAAGCCTTTGGGGTCAGAGAAAGCATTTGGTGACTTGAGGGAGCGGACagaatttttaagaaaatgtttttacgtTTGAAAGTCATTCAAACTTGTTTTGGATGCACCGAGTACCAGAGCACTCGCATACACACAGCCTGCAAATTATGTTTGACTACAAAGAGAATACTTCAcagatggttttttttttttacctgttttgtaatgtcaaaaataaactaaattcaaGAAGTGGC

Function

GO: NA

KEGG:

id description
K13198 KHDRBS1; KH domain-containing, RNA-binding, signal transduction-associated protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247118.1 lncRNA downstream 35053 8078100 ~ 8083896 (-) True LOC122324233
XR_006247114.1 lncRNA downstream 72070 8046276 ~ 8046879 (-) True LOC122324217
XR_006247019.1 lncRNA downstream 121692 7996087 ~ 7997257 (-) True LOC122323519
TU194130 lncRNA downstream 122555 7996092 ~ 7996394 (-) False LOC122323519
TU194064 lncRNA downstream 130624 7987520 ~ 7988325 (-) True G131413
XR_006246989.1 lncRNA upstream 13661 8142931 ~ 8144195 (-) True LOC122323284
TU194151 lncRNA upstream 46113 8175383 ~ 8176840 (-) True G131464
TU194202 lncRNA upstream 95549 8224819 ~ 8272803 (-) True G131495
TU194216 lncRNA upstream 119551 8248821 ~ 8249227 (-) True G131501
TU194221 lncRNA upstream 150724 8279994 ~ 8280260 (-) True G131506
XM_043218134.1 mRNA downstream 317228 7786886 ~ 7801721 (-) True kpna6
XM_043218017.1 mRNA downstream 334724 7777473 ~ 7784225 (-) False txlna
XM_043218018.1 mRNA downstream 334755 7777473 ~ 7784194 (-) True txlna
XM_043218019.1 mRNA downstream 334758 7777473 ~ 7784191 (-) False txlna
XM_043217931.1 mRNA downstream 341835 7773965 ~ 7777114 (-) True eif3i
XM_043217224.1 mRNA upstream 16366 8145636 ~ 8147485 (-) True agr2
XM_043218401.1 mRNA upstream 21689 8150959 ~ 8162163 (-) False ppp1r10
XM_043218402.1 mRNA upstream 21689 8150959 ~ 8162163 (-) True ppp1r10
XM_043218400.1 mRNA upstream 35598 8164868 ~ 8174472 (-) False abcf1
XM_043218399.1 mRNA upstream 35598 8164868 ~ 8174472 (-) True abcf1
TU193992 other downstream 513806 7602133 ~ 7605143 (-) True G131373
TU193918 other downstream 721003 7395180 ~ 7397946 (-) True LOC122324169
TU193894 other downstream 758838 7356621 ~ 7360111 (-) True LOC122323893
XR_006247131.1 other downstream 1415012 6703871 ~ 6703937 (-) True LOC122324261
XR_006247130.1 other downstream 1415560 6703323 ~ 6703389 (-) True LOC122324260
TU194205 other upstream 158024 8287294 ~ 8320885 (-) False trit1
XR_006247071.1 other upstream 160318 8289588 ~ 8320901 (-) False trit1
XR_006247069.1 other upstream 597989 8727259 ~ 8738786 (-) False si:dkeyp-120h9.1
XR_006247085.1 other upstream 622099 8751369 ~ 8757673 (-) False hey1
TU194713 other upstream 1179450 9308720 ~ 9309352 (-) True G131861

Expression Profile