RNA id: XM_043217765.1


Basic Information

Item Value
RNA id XM_043217765.1
length 983
RNA type mRNA
GC content 0.50
exon number 8
gene id exosc7
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 18511650 ~ 18514678 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTCTCGCGCTTTGTGATGACGCACAGCGCACTGCGTGTGTTTCAAACATGGCAGCAGTTCAAGTAAGCGAAGCGGAGAAGGTTTATATCGTACACGGCGTTCGAGATGACCTGAGACTGGACGGGCGAGGATGTGAAGACTACAGACACATGGAGATCGAGACAGACGTGGTGTCAAACACCGATGGATCTGCTAAAATCAGTCTTGGTCTTACAGATGTTCTCGTAGGAGTAAAAGCAGAGATTGGTAAACCCAAACCCATGGTGCCGGATGAAGGCTATCTGGAGTTCTTCGTGGActgCTCGGCAAACGCCACGCCGGAGTTTGAGGGGCGTGGAGGGGAGGAGCTGGGGGTGGAGCTTAGTAACACGCTCTATAAAGTGTTCAACAACAGACACAGCGTGGACCTGCGTTCGCTCTGCATCTGTCCAGGAGAGAACTGCTGGGTGCTGTACGTGGACGTGTTGCTGCTGCAGTGTGATGGAAACCTGTTTGATGCCATATCCATCGCGATAAAAGCTGCTCTCTTTAATACGCGaattCCCAAAGTGCACGTATCTGAGGATGAGGAGGGAGTGAAGGAGATCGAGCTGTCGGATGACCCTTACGACTGCATGCGGCTTAACGTGGAAAATGTGCCTTGTGTCGTAACCCTCTGCAAGATTGGTCACAGACACGTAGTGGACGCCACGCTACAGGAAAAGGCCTGCTCCGTGGCCAGTCTCTTGATTTCAGTCACACACAGAGGCATGGTCACATGTGTCAGGAAAATGGGAGGAGGAagtttggacccagaaagtatCTTTGAGATGACAGagGCTGGGAAACGTGTGGGGAAGGCTCTTCATGCTcctctcatggagctgctgcagaaagaagaaagtcttGGCAAGAAACGGCAGAAAGTGGGATTCCTCGGATAGCTtcctgttttgtaccttttttttgttttgtttttccaataAATGAGCAAAATTTTCTA

Function

GO:

id name namespace
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0004527 exonuclease activity molecular_function

KEGG:

id description
K12589 RRP42, EXOSC7; exosome complex component RRP42

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198531 lncRNA downstream 50751 18457165 ~ 18460899 (-) True G134411
TU198468 lncRNA downstream 93797 18417026 ~ 18417853 (-) True G134365
TU198411 lncRNA downstream 207993 18290057 ~ 18303657 (-) True G134332
XR_006247107.1 lncRNA upstream 8522 18523200 ~ 18532017 (-) False LOC122324145
XR_006247106.1 lncRNA upstream 8522 18523200 ~ 18532017 (-) True LOC122324145
XR_006247108.1 lncRNA upstream 8522 18523200 ~ 18530637 (-) False LOC122324145
TU198545 lncRNA upstream 9019 18523697 ~ 18530621 (-) False LOC122324145
TU198546 lncRNA upstream 18495 18533173 ~ 18533500 (-) True G134426
XM_043217766.1 mRNA downstream 145 18506695 ~ 18511505 (-) True clec3bb
XM_043217085.1 mRNA downstream 16092 18494100 ~ 18495558 (-) True limd1b
XM_043217029.1 mRNA downstream 17740 18482654 ~ 18493910 (-) True recql4
XM_043217072.1 mRNA downstream 39976 18467978 ~ 18471674 (-) True sqleb
XM_043218453.1 mRNA downstream 87958 18420659 ~ 18423692 (-) False naxe
XM_043217829.1 mRNA upstream 27478 18542156 ~ 18610956 (-) True bop1
XM_043217139.1 mRNA upstream 110918 18625596 ~ 18641283 (-) True si:ch211-80h18.1
XM_043217148.1 mRNA upstream 110918 18625596 ~ 18641277 (-) False si:ch211-80h18.1
XM_043217141.1 mRNA upstream 110918 18625596 ~ 18641277 (-) False si:ch211-80h18.1
XM_043217152.1 mRNA upstream 110918 18625596 ~ 18641277 (-) False si:ch211-80h18.1
XR_006247044.1 other downstream 323629 18184141 ~ 18188021 (-) False si:dkey-266f7.5
XR_006247043.1 other downstream 323630 18184141 ~ 18188020 (-) False si:dkey-266f7.5
XR_006247042.1 other downstream 323632 18184141 ~ 18188018 (-) False si:dkey-266f7.5
TU198381 other downstream 500251 18010882 ~ 18011399 (-) True G134318
TU198368 other downstream 576214 17929689 ~ 17935436 (-) True s100a10a
TU198770 other upstream 361936 18876614 ~ 18933139 (-) False smim13
TU198769 other upstream 412843 18927521 ~ 18933139 (-) False smim13
XR_006246998.1 other upstream 1028104 19542782 ~ 19652807 (-) False khdrbs3
XR_006246997.1 other upstream 1028104 19542782 ~ 19652806 (-) False khdrbs3
XR_006247087.1 other upstream 1156109 19670787 ~ 19688386 (-) False LOC122324012

Expression Profile