RNA id: XM_043217766.1


Basic Information

Item Value
RNA id XM_043217766.1
length 3209
RNA type mRNA
GC content 0.40
exon number 3
gene id clec3bb
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 18506695 ~ 18511505 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTTCCTATATACAGGTTGAGGGCAATTTAAGCgcataggtttttttttttttttatggctaaATTGAATAGATAAGTAGAACTCGACACCCAGTATACTTGAaggaatagtttttttattgtttttatctgaactgatttggagaaatgttgcATTACATTACTTACTCATCAATGGATgatctgaagtgaatgggtgccgttagaATGAGAGTCggagcagctgataaaaacattgaacatttttacataaagcaatgttttttttaaataaatccattaAGGCATTTGCTAAAGTGGTTGATTTCAGCTAAAacagtccataatccataacatTCCTTTCTCTGTAGTAAAAGTCTGCTCTCCGTTGTCATCTCGCATCGAAATCTACCTACATGGGCAATTGTGCTTATATATGGaatctattaatattaatatcctgattcaatgcattttggagttaatttatttttttagaaacacaCAGCTTTACACTTTACTAGGGTCTTGTGGATTACTGTGGTATTTCTGTCATCTGTTTGgacactcattctgacggcacccattcactgcagaggatccatcaAAGAACAAGCGATGTGATattaaatttctccaaatctgttacGGTGAACGAACAAACCCATCAACGTCTTGAATAGCCTGAGGGTGAGTCAGTTTCTCTGCAAATTTTccagtgtttctttaaaaaagtcgATCGTTTTATTTGTCCTATAAAGCATATATGATTCGATTATGAATATTAGGTGAAGTAACGTGGATAGACGTGTAGAATACTCATGGGCTTGTGTAAGTTCACAGGTGCTGAAGTTGTCGTTTTTTCCTGGGATGGTGTTTGAGCCCTGACCAGTGTCCAGCAGGACGTTTCGTCTGCCACGTGTCGTCTGAAAAAGATCCAGCTGCCGGGAGCCTGGATATATTCCATCCCATAATAGCTTTGCTTCTTCCTGTGGCACGctgaatccaaaataaacagcagCTATCACTGCATAGATAACAATATCATACACAAGAAGAATGCATGACGGCAAATGTGTCCTGAGGAAACCTTAAACGCTCCAGGACTTCAGGATTGAGACAGTTCATTCTAAAGGTTTCTAACCTAACTTATAAAGCTTCTTAAAAggatagtccacccaaaaaataacattttgaagaatgctggtcaCTGAAGTTTTGGTTTCATTCTACTTCCATGATATAATTgttgtcaggttttttttagttGAGAAACTGGGGCTAGCTGTCACACTTAAAAACTGACTatatacacacccacacaattattattttttttgtctaatgaAATGATACCCCACATTTAAAACAAGTCAATTTCCACATAATTTAGCTAaattataaaaggaaaaataactataaaactctaaatatttttgtgacaaTTTTGAAGgtaacaaaaatctattttgagcaacagataatgttttataaactcTCCTGTTAAAAATTTGACAACTTGCTTATAAAAATTACCTTTTTAGTGAAGTTAACTTTATATACAGATTTTTGTTTAGTATATAATATTGTGGCTTTATTGTGTTTGTTACAATAATATGATACTTGAATTTTAGTGTGGAGGAGATAATAttcaaagtttattttattggtctgtattttatgtaacacTTCTAGTCATGAGTTTTAAGCATGAGGATTGCTgaggccagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaggtgcaTGAGGAACGTCACTCCTCCTCTCTGCTTAGGATGAAGACCCAAAGCAGCAGGTTCTTATTACAGCAGTTTTCCTCTGCGAGCAGAGCTGAGAAGCAGAGATCTGTCCTCATTCTCCAGACTTCACCATGAGACTCCGAGACGGCTGTCTCCTGCTGGGCGTCCTGCTGCTCCTCGCACACTCCTCACACCAGCAGAACGCCCCAAAAAGAAGCCCGCTAAGAAAGGTGAGACAAGAATCCAGCGCTGCTTTGGAGGACCTGCAACAGCAGATCAACGACATTGTGATGGAACTGAATCTTCTAAAGGAGCAGCAGGCCCTGCAGACCGTCTGTCTGAAAGGCACGAAGATCCCCGGTAAGTGTTTTCTGGTGGACACCGAGAAGAAGCGCTACCACGCGGCCAATGAAGACTGCATCGCCAAGGGAGGCATCCTCAGCTCTCCTCTGTCTTCTGACGAAAACGCGCAACTCTACGATTACGTGCGCCGGAGCATCGCCCCCGACGCTGATATCTGGCTGGGCGTCAACGACATGCAGACGGAGGGCGTTTGGAGGGACCAGGCCGGCTCGAACATCCGCTACAAGAACTGGAAACTCCCGCAGCCCGACGGCAGCAGCGCAGAAAACTGCGCCGTACTCTCCGGCGCTTCCGGCGGGAAGTGGCTGGACGAGAACTGTCGCGAGGAGAGAGCTTCCGTCTGCGAGTTCAACATCGTCTGAGTTCACTCGGCGGCCCGGTTTGCTTATCCGTCTGTCCTTTCCGTTGCACGGTCCTGCCTGCATTGTGTTTGCTTTGTAATTGTAGACGTTTCTTTCGCGGAGGACAAAGGTTGTCATTTCAGTCCATAAAAATGTTAGATCTATAATCAAACAACGCTGTGATAAAAGGCATTTTTGAACAGGCCCCATTAAGAGCTAGCCAAAAacgcaaaataaacaaactcattAAAGAAGAAATTCAGGCAAAAATGAACGTTTACTGACCCTCGGGCCATCCagacattacaataatccacaagtaatccacgctgggctccagtccatcaattaaagCATTGTGAAaggaaaaactgtttatttgtatgaaagaaatacatttactttCAAGCCCtttgcttctggctaaaatacatcatatttaatacatcctCCAGTCAAAAATTAATCCCgttcacaattaaaaacaaacatatttgttttattctgagtCAGACAAGACAACTTTTCACcatgacttgagggtgagtacattttcagcagtttttcatttttagaaaaatattaatttaagatTCCTGAATCCTGATGAATTTCGAGTCCAGTCACCTGATAAAAATCCAGTCAAACGATGATTATTTCAGATTGCTAGCTTTgttacttgtttattttctaaCAAACTAAATGTCTAGCCTGATATAacctgaatatatatttttatcttaataaAGTGCATCAAAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198531 lncRNA downstream 45796 18457165 ~ 18460899 (-) True G134411
TU198468 lncRNA downstream 88842 18417026 ~ 18417853 (-) True G134365
TU198411 lncRNA downstream 203038 18290057 ~ 18303657 (-) True G134332
XR_006247107.1 lncRNA upstream 11695 18523200 ~ 18532017 (-) False LOC122324145
XR_006247106.1 lncRNA upstream 11695 18523200 ~ 18532017 (-) True LOC122324145
XR_006247108.1 lncRNA upstream 11695 18523200 ~ 18530637 (-) False LOC122324145
TU198545 lncRNA upstream 12192 18523697 ~ 18530621 (-) False LOC122324145
TU198546 lncRNA upstream 21668 18533173 ~ 18533500 (-) True G134426
XM_043217085.1 mRNA downstream 11137 18494100 ~ 18495558 (-) True limd1b
XM_043217029.1 mRNA downstream 12785 18482654 ~ 18493910 (-) True recql4
XM_043217072.1 mRNA downstream 35021 18467978 ~ 18471674 (-) True sqleb
XM_043218453.1 mRNA downstream 83003 18420659 ~ 18423692 (-) False naxe
XM_043218452.1 mRNA downstream 83018 18420659 ~ 18423677 (-) True naxe
XM_043217765.1 mRNA upstream 145 18511650 ~ 18514678 (-) True exosc7
XM_043217829.1 mRNA upstream 30651 18542156 ~ 18610956 (-) True bop1
XM_043217139.1 mRNA upstream 114091 18625596 ~ 18641283 (-) True si:ch211-80h18.1
XM_043217148.1 mRNA upstream 114091 18625596 ~ 18641277 (-) False si:ch211-80h18.1
XM_043217141.1 mRNA upstream 114091 18625596 ~ 18641277 (-) False si:ch211-80h18.1
XR_006247044.1 other downstream 318674 18184141 ~ 18188021 (-) False si:dkey-266f7.5
XR_006247043.1 other downstream 318675 18184141 ~ 18188020 (-) False si:dkey-266f7.5
XR_006247042.1 other downstream 318677 18184141 ~ 18188018 (-) False si:dkey-266f7.5
TU198381 other downstream 495296 18010882 ~ 18011399 (-) True G134318
TU198368 other downstream 571259 17929689 ~ 17935436 (-) True s100a10a
TU198770 other upstream 365109 18876614 ~ 18933139 (-) False smim13
TU198769 other upstream 416016 18927521 ~ 18933139 (-) False smim13
XR_006246998.1 other upstream 1031277 19542782 ~ 19652807 (-) False khdrbs3
XR_006246997.1 other upstream 1031277 19542782 ~ 19652806 (-) False khdrbs3
XR_006247087.1 other upstream 1159282 19670787 ~ 19688386 (-) False LOC122324012

Expression Profile