RNA id: XM_043217770.1


Basic Information

Item Value
RNA id XM_043217770.1
length 3184
RNA type mRNA
GC content 0.42
exon number 11
gene id pdk4
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 12558911 ~ 12568503 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCAAATTCATATAATCAACCTTTTTACATTAACCGGACCGTGCAACGATAGCGTTTCACCTGTCGATAAGAATAACAGGAGAGAACCTGACCTGTGGGTTCAACTCTATTCTACTACATCTATGCAGATTGGAGTAACAGTCTCCCCTCTCCCCTCCCCTGTGTTATGTTTGTACCCTGTTTTGTACCTTGCGCCGATCGGTTATTTTGGTGCAATGACAAATTAAACCGAATTAGAGCGATTCAGGGGGACCCTTCCACCGGACGGTCCGACAGAAAGCGGATTTCTGCGGAGGTCTTCATTTACGCGATGAAGTAACAGGCTGAGCTACAATGTCAAACTTCGCGAGCTGCCTCTGATGAGACGAGGACGATAACTCGCCAAGAGCGGTTTTTTTCCGAGATCTGAGGGTTTCCCTTTGAAGACCGACATGAAGTTCGCCCAGATCATGCTGAAGAACAGCTCGAAGCTGAACATACCTAAACAAGTGGACCGATTTTCGAAGTACTCTCCGTCCCCGCTGTCAATGAAGCAGTTCATTGACTTTGGATCAGCCAATGCCTGTGAAAAGACCTCCTTCATGTTTTTAAGGCAAGAGCTTCCGGTCCGTTTAGCCAACATCATGAAGGAGATCGACTTCCTCCCGGACAAACTGCTCAGCACTCCTTCACTGAAGCTGCTTCAAAGCTGGTATGCGCAGAGTTTGATGGAGCTTGTTGACTTTTTGGAGAAAGACCCTGATGATAAAAAAATCCTAACTAAATTCACAGAAACGCTGATCAATGTCAGGAACAGGCACAACAATGTGGTGCCCACCATGGCACAGGGAGTGCTGGAGTACAAGGAGGCCTTTGGCGTGGATCCCGTGACCAATCAGAATGTCCAGTATTTTTTGGACCGCTTCTACATGAGCCGAATCTCCACACGCATGCTGATGAATCAGCACACGTTAATCTTTGATGGCAGCACCAATCCAGCCCACCCCAAACACATTGGCAGTATTGACCCAAACTGTGACGTGGTGGAGGTTGTAAAAGatgCCTATGAGAGTGCCAAGATGCTGTGCGATCAGTACTACTTAACCTCTCCCGAAGTGGAAATCAAACAAGTGAACTttaaagGACCCAGTGACCCTATACATATAGTTTACGTGCCTTCTCATCTGTACCACATGCTCTTTGAGCTCTTCAAGAACGCAATGAGAGCAACTGTGGAAACCCATGAGACCAGCCTACATCTCCCAACAATCAAAGTGAGAGTTTCTCTAGGAAGCGAAGATTTGACTATCAAgATGTCTGACAGAGGAGGTGGGGTTCCTTTGAGGAAAATCGAAagacttttcagctacatgtatTCAACTGCACCGAGTCCTGTGGCTGAAAACGGCCGTAATGCTCCTCTGGCTGGCTTTGGCTATGGTCTTCCTATTTCCCGCCTTTATGCCAAGTACTTCCAGGGAGATCTGCAGCTCTACTCTATGGAGGGATACGGCACGTCGGCAGTCATATACCTAAAGGCCTTATCCACGGAATCAATAGAAAGACTTCCCGTCTTCAACAAGTCAGCCTTAAGGCATTATCAAACGAGCACAGAGGCCGACGACTGGTGCATCCCGAGCAGCGAGCCCAAGAAACTGGGAAAGTACGAGTTCAGTGTTTGAGAGGAATGAGAAGCTCGTGATAAACATAAGGACCGAACAGGATGAACTGTAGTGGGGTAACAATCTCTGTGACAGTTGAGGTATTTCAGACGCGTGGTTTCATCAAAGGGTTGACAATTGACTTTATGAATGTTACAGTATGACTAACAAGGGCATTCTCGTCTTCCACATATCACATTGCTTATAACACACCATTTGCGGTGCTAACATTCAGAGTTTCTTCTGCGAGGTCAGAGACTTCAGTCGATTGTACTGAAGCTGACTGGTCGTTTGAGCACTTGTTGATTCCTACACATTACCACAGATTctgtaagtgttttagagtatgTGAACGTGTGTTTTAGTCAGTGGGGCCAAGTTACCAGCTTTGTGTGAGTTATAtagcatgtatttacatgtgtttttttatcacAGATATTTGGGAGAACAATTTCCGAATATCTGAAATTAACCAAGGCTTTATATATTTCCttggttaaaaatgcattcacagTGCAAATACTAGAATGACCATAGTTGTGTGTTGCTTGACTGtgatcttaaaatgtttttctaacaGTTGGACCTACTGTCTAACACTCCATTTAGTTTTGAGTGTAAAAATGTGACGCTATCGATAAGGCCAAATCATTTCGTCAACATGCAAGAGTGACTTCACTGAccgtaaaaacattaaatttaatttgacacTCTATCTAATATGTAGTAATAATAGATTGTGTCAGAAGAAACACAGGTTCGTTGCTatgttattgatttatttaagacTGTTTAGATGGATCAGACAGTGTTGCTTTTTATGACCACAAAAATGTATGTGACAACAGCTTCTGGCTGAACATTTCAGGTATTCtgtatgaacaaaaaatgacatgTAGCTCTATttgattctctttttttttttagcatgaaaACACTGAAGAGGCGATATTTTCGTTATTTTCATTTACGTATAAATGAAAGATGAAATggcttgtttttaaatatattatctcAGGATTGTGCTGATTTGCCTTTCtagttttgtctgtttttgttttgtttcattttaattttactgtaatatttgcAAAGTCGGCTCGTCGAAAGCAATGTGAAGGACCTGTATGAATTTTAAGGGAACTCAAGTGGCAGCAGCTGTTCTGTTTCAAGAGACACTCATCAGACTCTGGGTGGCTTTCAGCTGCTAGCAGTTTGCTCTGCTAACATGTATTTGCCTCGTTCAGAGATGGAAGTATTTAGACAAACCTCAATAGATCATTTGCACATTTCAAGCTATAATCAAGAATTGACATGTTGATGTTATCCATTCATACCTCATAAGCTTCATTAGTAGTCATGGAGAGCTTGGCGCACTCCTCCTCGTGAAATCACACCTGCTTCTTGACGTGTCCTAGATACACAGTCCTGTATTCACAAAGAAGCAACTATGTTAATGGATGCTCTGTACTATTGATGAAACTCACTCATGCGGTGAGAGAGTGCCATTTTCTGTACtattaaaacaatgaatgaagaaaaaa

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0016772 transferase activity, transferring phosphorus-containing groups molecular_function

KEGG:

id description
K00898 PDK2_3_4; pyruvate dehydrogenase kinase 2/3/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195590 lncRNA downstream 2266 12556258 ~ 12556645 (-) True G132455
TU195565 lncRNA downstream 7406 12548529 ~ 12551505 (-) True G132445
TU195564 lncRNA downstream 10741 12546492 ~ 12548170 (-) True G132444
TU195563 lncRNA downstream 14199 12543892 ~ 12544712 (-) True G132443
TU195562 lncRNA downstream 15579 12543122 ~ 12543332 (-) True G132442
TU195813 lncRNA upstream 2442 12570941 ~ 12573541 (-) True G132580
TU195810 lncRNA upstream 9496 12577995 ~ 12580817 (-) True G132579
TU195839 lncRNA upstream 119304 12687803 ~ 12697296 (-) False G132602
TU195840 lncRNA upstream 119304 12687803 ~ 12701078 (-) True G132602
TU195843 lncRNA upstream 131423 12699922 ~ 12722428 (-) True G132603
XM_043218307.1 mRNA downstream 50306 12497228 ~ 12508605 (-) True sgce
XM_043218309.1 mRNA downstream 50307 12497228 ~ 12508604 (-) False sgce
XM_043218312.1 mRNA downstream 50308 12497228 ~ 12508603 (-) False sgce
XM_043218308.1 mRNA downstream 50308 12497228 ~ 12508603 (-) False sgce
XM_043218311.1 mRNA downstream 50315 12497228 ~ 12508596 (-) False sgce
XM_043217794.1 mRNA upstream 51284 12619783 ~ 12657157 (-) False LOC122323727
XM_043217792.1 mRNA upstream 51284 12619783 ~ 12657157 (-) False LOC122323727
XM_043217793.1 mRNA upstream 51284 12619783 ~ 12657150 (-) False LOC122323727
XM_043217795.1 mRNA upstream 51284 12619783 ~ 12657112 (-) False LOC122323727
XM_043217791.1 mRNA upstream 51284 12619783 ~ 12657065 (-) True LOC122323727
TU195513 other downstream 120840 12435779 ~ 12438071 (-) True bet1
TU195352 other downstream 726004 11832173 ~ 11832907 (-) True G132292
TU195332 other downstream 821429 11726323 ~ 11737482 (-) False LOC122323871
TU195233 other downstream 1387998 11170270 ~ 11170913 (-) True G132219
TU195129 other downstream 2248236 10307958 ~ 10310675 (-) False elp2
TU195819 other upstream 29275 12597774 ~ 12669196 (-) False sem1
TU195818 other upstream 75465 12643964 ~ 12669196 (-) False sem1
TU195817 other upstream 98765 12667264 ~ 12669196 (-) True sem1
TU195943 other upstream 459318 13027817 ~ 13029349 (-) True cart4
TU196058 other upstream 716032 13284531 ~ 13285461 (-) True G132733

Expression Profile