RNA id: XM_043217777.1


Basic Information

Item Value
RNA id XM_043217777.1
length 8051
RNA type mRNA
GC content 0.46
exon number 7
gene id hivep3a
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 2894544 ~ 2914709 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGAAAGCAAACCTTAATGCAAGTTTGCTTGTACAGTATACGTGATGTCAACAGAAACTGATGACTTCTGAGGCAACGGGAATTTGTATCGATGCACCAACTAATAATTTCTTTGTCAAATTTGATTTCCCCCTCCACCctgaaaatatataacacattttgGCATTGATGAGTGGCATCTGTGCCTCCCACTCTTTGAAAATCTCCGCTGTCCGTCCGCCGTAGCTACACGAAGCATAATCTCACCTCCCCTTCGCCTCACGGTTAGCGCGCTAGACTACGGCAGCTCATTCATACattcagcctctctctctctccccgtctctctcgcTATGACTCACACACTCTCAGCCTCTCAGCCTTCACTCAAAGCCTGACTGCTCTTACACATTAGCAGGGCTGGAGACGAGACCTGCACATACCAGAATTTAAATCTCTGAAGTGGATCATCATAAAGCATCTGCAGAATAAGGAGACTTAAAAGCATTCATGGAAAAACATAATTGCCATGGATTTCCAAGGACAAGAAAGAACAAGAAACAAAAGAGGCAGAATTTTCTCtaactgaaaaactgaaaaaaataatttaattgttaaaattgtaatgtttcatgCAATTCCTTTGAAGAAGCTCTTCTCACATTAAGCAATAATGTTTACAGAATGCTCCAAAACAGTACAATCCATGCTAAATATTTTGCGATGTTCTGAATGGTCATAAATTAATTGATCATTCATACAGTCTGGAATAAACAGTACCTCAAGCTTTCATCTCATTTTATGGAGGCCTTGCATAGCCAGTTGACCACAGGGGAGCAATCTGGAGGTTTAGAAAAGCAGAATGAGACTCCAGCAGACAGCCCCCAGCAACATTCAGTCCCACAGTATCATGAACAGAACAAGGTTGTCACCCAGCAGCAGCATGCACAAcagcaaaaacatcttaatattGAGAGAAAGCGTCTCAGATTGCAGAAGAAAACTGCTCAGGAGACAGACACTGTTGAAGACAGAGAGTCACAGAGAAGTTCAGAATGTCTCGATGCTAACATGAGGCAGCCAAGTGAAATGCCATCTGGAGCTGCATCCTCAGCCGTATCCGCTATACCATCCTGTTCCACGGATGATGTCCTGGAAGGTACACCTAGACAAAAACGTGAGCGCAAACCTCAAAAGCCCGGAAAGTATGTGTGCTCATACTGTGGTCGAGCATGTGCTAAACCCAGTGTGCTTCAGAAACATATTCGATCCCACACTGGAGAGAGACCTTACCCCTGTGCACCATGTGGGTTCTCCTTCAAGACTAAAAGTAACCTTTACAAGCACAGAAAGTCCCACACTCATAGGGTGAAAGCTGGTCTGACTGCAGAAACGGAGGGACCTGGTATAGGTTGTACAGAGGAGCCACTTTCAGAATCAGATGACGAAAGCCAACCATCgtcctttttagaaaaacaaagaatGTCTATTGAAAAGTCAGATGTTATAGAAAAGAGCTCTGAGGGACAGTTACAAGGTATAGAAGACTCCCACGCAGTTAAAAAAAGACTTGCAATGCGACTTAGCAGAGGAAGGCGAACACCTATAGGATCATCTGACGAAGCGTCCTCATCGTTTGGTCTAAGTAGCAAAGGTAGCACAGAGTCTGGCTATTTTTCTCGATCTGAGAGCACAGAAGTCTCTCAAGATAGTCCACCAAACACAAGTGCCAAAAGCTATGCAGAGGTCATACTTGGAAAGTTTGGTCGCCTTGGTCATTTACAAAGAACTGCTCATGAACAACATGGCAATCCTGCTGGGCAAGAAGGGAAAAGAATTCCATTTACTGTGCCTAAAAAGCAAGTTATTGACCACATAACTAAACTCATCACCATCAATGAGGCTGTGGTAGACACCAGTAAGATTGACAGCGTCAAACCCAGAAGGTTCTCACTCTCTAGGAGAAGCAGCACAGAAGTGAAGCCAACCTCTTCTAAAGAGTCTTTTCTTCACAGCCCAAAAGAAATAGATCTGAGTGCAAAGAGCAGTGGTTCTATTACTCTTGGCGTACCTTGTGAGAAATTTCAGCACCATTCCCTCAGTATCCAGCAAGCTGACCCAACCACCACCGCTCCTCTTCTAAGAAGTCAATCTATGCCTTCAGATGCAGGTGTTAGTGATGTGTCTGAAACTTCTCGTAGCCTTCGCCTTAGCCAGTCCTTTGATGACCAGCAACCAGTTCAAAATCGGCGTCATGGTATGCTAAGGCGGCAGCCCGCAATTGAATTGCCCATAGGTGCTGAAATGACCATGGAGGAACAATCCTATTCCAGCTCACCATTTCATCCCTCAGTTTCTACAGTGCCTGATCCCAGCCTGAAACAAGAGCCATTTGATTGTGATGCATGTGGTATAGTTTTCACTGACTGGGAGAGAtatcaaacacacatacagcactGCTGCACGGTTCATATTTCTCAACAAACTGAAAGTCAAGTCTATCAAGTGGAAGAAcccacaagaacacacacaacTCGACCTGGTGCTTTTGCCTttagaaaaagaaggaaagaagagAGTATTGAACTTGAAGATCCTTCTTTACCTTCTGTTTCTTATATACCACTGAAAGGTTATACAACATCTTGTGAACAGCCTGTTAAAGGGACAATTCAAGAACATGGTACAGAAGGTGCTTTGAAAGGAATATCTGTCATACAGCATACTAGTTCATTTGAGAAACATGATTTGAGTACTGTAAAAACTCTTGGACCAGATGAGGTCTCTCACTCTCATGATGCCTCACACTGTTCTCCTTACTCACAATCAAAGCAACAGGCAACTAAACCATCCTTCCGTAAACTTGTACGTCAACACAATGTACAAGTGCCAGAAATCCTGGTCACTGAAGATTCTAACACCCCTCCAACTGTCCCCAAAATAAAGGATGTTGAAAAAGTCAGTGAGTTCCAATGGCCCCAAAGAAGTCCAACTTTGGCTCAGCTTCCAATTGAGAAGTTACCACCTAAAAAGAAACGTCTTCGTCTTGCAGAAGCTGCACAGTCATCAGGAGACTCAAGCTTTGAATCAATGTCCCTGCCTCACAGTCCGAGTCAAGACAGTTGTGTGTCTCATACATCCAGTCGATCAACTTCGTTTGAGGAGGCTTGCAAGGGTGATGCAGATACGACACCAACTAGGAAATCAAGAGCTACACATACTTTGACAATTCCCACAAATTCCCACAGAGAAATGAGGCGCTCTGCATCTGAGCAGGCACCCCATGTTCCTCAACATGTTAACCTTATTACAGAAACTCGCAGTAAGTCATTTGACTACAGCAGTTTGTCTCCAGATAGAACACCCGCAGGATGGAGAGAAAGGCGAAAATGCCTTCTAATGAGGCATAGTGCAGTGAGGGAACCTGAGGAGGAAGACCAAACTTCTAAAACCATCAACACCAGTTCTCCCACTCAAAGGACTAACACATCGCCTAGCTATAGCCCAGGCACCTCCTACAGTCCAACCACCACCCATCTTGTGACTTTAAGCAATACTATACACTCATTTGGTGAGAAGCAGGTCATGCAAGCACAGCATGTTTTACCAGAGAATACCCAGCAGAATGCATTGCAGTTGACTCCATTGATTCATACCGATCAACCCTCAACAGCTGGAAGTCTGCTTTGTCCATCAGGTGCTGCCAGAGCTCATTATTCTTCAATGTCAACAGGACTTAAGCTCGAAATTCCAGTGgaaaatgaatcaatgaattCTGACACAAGGGTCAACCAATCGTACCTCACTCATTATTCCCATCAGAATCTTGGTTTTGATGTTACTTCAAACCCAGAACCATTGAGACCTTTACCAGCCCAGAGAATTCCAGTCCGTCTTAATTCACACCTTACACATTATGCAGGCTCAATTTATACTACAGTTTCACAAACATTTACCGCAAGGCCTCAGGAACCATGCTGCTCTGGAGTAAGTTCAGGTTTAGTGGCCTCAAAATTTGAAATCATGGACCAACAACCAGTATCTGACGGATCCAAATCAATAGGTGCAGGTGCAACCAAACGAGTGTTGTCCCCCACGAGCAGTGAGGAGCTCATTCCAGAAAATGAGCAACAGcaaaaaagagtgaaagaggaggaggacgatCATGAAAATGAAAGTGGAAATGATAAACTTTTAATCGAATGCAAGAAGGAAGAAAGACTTGTTGAGCAAAGTGTCATCTTCCCTATGGAACGCAAAGAACCATCGTTTCCGACTCTTAACACTAACCTTAATTTTAGCTGGTGCTATCTAAACTACACAAAGCCCAATCCGTCCATACAGAGTGAACAACAAAACTCAGTCTATTCTTCATGGTGTACAAGTACCCGCAACCCATACCCTCCTGGCCTGACAAGCAAGGACATGCTAGCCCTGTTGCACTGCAGGCAGAAACATGCAGCACCCATCTACACCACGGCAGCCATATCATCCTCTCTGGATGGGAAACAAGAAACACCTGACTCCCAAAAGCCTAACGTAACTGAGGTACATGCCACCCAGCCCACAGAACCGAAAGAAACCCAGCAAGCTGAGTTGACAGAGGTAGAAAAGAAAACATCGGAGGAGAAGGAGGATCAACTATCTACCTCCAAATACAGCTCACGGGTTCAGATTTGTGAGGGAGGCTACAGGTCGAGTGAGGAGTACGTGTATGTCCGGGGCCGTGGCAGGGGCCGATATGTATGTGAAGAGTGCGGAATACGCTGTAAGAAACCCAGCATGCTGCGCAAACACATACGACTGCACACGGACGCTCGGCCTTACGTCTGCCAGCACTGCAACTTCGCCTTCAAAACCAAAGGGAATCTAACTAAACATATGAAGTCAAAGGCTCACGGGAAGAGATGTCCAGAGGGAACCGCTCCAGGACCGGTCCAGTGTGAGCTTGAGACAGATGAGGGAgGTGACGGCGATAAGCATCTCCTGGAGACGGAGCTGGTGGAGGAGCACCAGTTCTCAGACGCAGAGGAGACGGATGGGGACGAGCCTGAAGACAACGATGAAGGTGACGAGCGAGCGTCGTGCTCCTCCTCGTCGTCTCTGTCCCGGGGCCCTCACGGCTCCGCCGGCGTCTCTGGCCTGTCAAACCCAGGCTGGGAGCAGCATCCCAAAGCTCCTGTCAGCATGAGCCCCCGCAAGCCGAGCCACTACGGAGAAGCCTCGTCTCCTAAGACCAGCAAGTCCATCGTGACCCTTCCGCACCTCCAGCCGGCCGCGGGGAAGTGCTCGTCCCCCATCCGCAGCCTGTCCCCCGGCCTGCAGATGTCCCCTGCTTTACCGCAGTCTCCCGGACGGGACTTGTCCCCTCTACGCTGTCCCTCGCCGAGACCCAGTCTCTCTCCGGCCTCCTGCCTGTCCTCCTCGTCTCCCTCAAACCGCCCGGACTCGTCTTTCCCAGAGAGACGCGTGTCCCCCATTAGAGCCCTGTCCCCCATACAACCCGCGTCTCCCGGCTGTCCACTTGCACTGACCGTCGGGGCCAGCGTGACTATTCAGTACCAAGCCGATAAACCCAGAGAGCCAACAAAAGCCTCACCCACCAGACTACATCTCAAGACCAAACTGGAGAAGACGCACAGTCCTCAGAGAAGGAGCAGCACGAGCCAGTCCTGGCCTCCGGCTCAGGGGCGTCTCTCCAGGAACACGCAGCCCAGGGAGGGCCAGCGTGTGTTGAGTCACCTGCCCCTCCACTCGCAGCCCCAGGTGATGACCAGCCTCACCATCCCCATCGGCGGCATCCAGATGGTGCAGCCGCGCTCCAACATGCTGCTCCGGAGCGCATCCCTGAACCACAGCGTGGCCCAGATGACCGTCACCCTGCTGACGAAGGAGAAGGGGGCCGACGGGAGTCCGCCGGGCCAGGTACCTCACCGCAGGAACCAGCTGATAGTGTTCACGGAGCCTGCGGTGGAGGGGTGCTCCACGAGCGACGAAGACGAGGAGCAGATCAAGGGAGTCGTGTCAAAGAAGAGGGAGGTCCCCGGCGTGCCCATGACCACCTGGAAGAGCATCTCTCAAAGAAACAACAGAAAGCATTCTAGAAGTCCCAAGAAAGCTCCGCCGGTGGACTCGTCGAGAACATCCATGGATGCGAAGTGTTGAAGGACAAGTTCAGCCGGAAATGAGAACGCTGTTGTGCATCACCTCAAACCTGCGCGTTAGTTTTGCTCTTTCAACACAATAGCTTTTGGTATTCGCTAggctttattttgacagtgcagtttaactacatgtcaactaattatGATTAATTCGCAAccacatgtctactaactctcttAGCAGACGGTTAgggcaggtttagggttagtagaagaAGTGGACATGTACTTTCCgatagtatgtagtatgttcAGAATAAAGCGTTAGAAGAGACGGTCTGCTAacgactgctagttgacatgtagctaCAAAGTTACTTGATGCTAGTAgaatgtttaaagtgggctatcgagaaaaaaaaaacgttaatggGAGCTTGGGGCAAAATGCAACCAAAAAAGCCCAAAATGATAAGGTGGCCAAAAcacaattaaactaaatatattatgGTCGTAATCTGAAAATGAAGGAAAAGTGTTGATTTTGGCATTATATTTAGATCTGCTCATATTGCAGCAGATTTCAGTTTTCCAATCAGAGGCGTTCGCTGTTCACTTCCTCTGAATAGTGCCCTCTTAAAAACACTCGCGAATAACCATTTGCAGATGCAGTacaaagatgaaaaatacaaaacagcaatAAACCAATTCATAAACCGTTCTTGAGCTTGTTTTGCATAACCAGGTTATGATGCGCagtttttttgaaacatttacagCGTTAAgaaatcaaacttttttaaagCCAAAGCCAAATAAGGTACAAATGTGTACTATTTGAAAGGGTATCACCCCGCTGacggcttttgtaccttttttcctGAGACTAGGTTTCATAGACTATATTTACACACGCTGGCGTGGCTTCGTCCATCTTTAGACCCCGCCTTCTCGCATGCCCTGATAGGTTGATTACGTACAGAGCCTGCACGCTATTGGTCAAACTACTTTTGATCGCCCAACGCCGGCTGAATAAGACTAATGCGACGATCAACACTTTTcacaattagattttaaatatattaaaaacacatttaaagttttCAAAGCCTATTCCTCGTGCGAAATCATTCTTCCTGACGCGCTGGTTTGTGTGGGTAAGCGACGACAGAGCTTTCGTTTCTGAGTGAGCTGTGCTTCTTTCTGGGGCCCGCCAGATTTTAGGAAGCGGAGAAAACGCCTCAGACCGCGGTTCAAGTCGTTGGACTGAGCTTCGCTGAATAGTTTTGCTCGGTTCAAGCTAGTTATGTAGATGTGTAGATACATTACCTTCCTGATCTATGTATATTTTCCTGTCTGCAGTCCGCATTTTACGTAGACCTACCACGCACGCGcgcatctctgtgtgtgtgtgtgttacgaggtgtaaaatgaacacattttattacatatatttaataaaataataaatatatatacgagGTGCCAATAAAatccatttcacatttttattgtgttacagCATGGaagcattaacaaaaaaataaaaaaaaattccactcGTCACCGAACAAAATATATCTATTATTAGAAATCCTACTgtacaaatgtatgtttttatatgcatttatactaTATGCTATGGCATCGCGgcatctgtttttctttgtcgTACGTGATGGTCGGTAGGCTGTTTTTTGGCCAGCAGTCAAACTCACGCGTTTCCGGTAAACAGGCCAGACCGCGCGCAGAAGACGAGCAGCTCTGGCCGGTGCTTCAGTTGTTCTCGTGGTGTTGATTATTTCGGTGTGGGAAGATGTCCGTGCGGTGTTCCTCCTGTTGTGATGTAATCTTTCAGACAGGACAAAGTATTATCAGAAATATAAGAGTAACATGAATTGACACGGTTTCAACGGTCTGTTGTTGCTTtacctgtttattttattcgATAAACTATGCACAAAACGT

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191940 lncRNA upstream 1052 2892904 ~ 2893492 (+) False serinc2
TU191939 lncRNA upstream 6940 2885471 ~ 2887604 (+) False LOC122323290
TU191899 lncRNA upstream 108717 2754024 ~ 2785827 (+) True G129979
TU191894 lncRNA upstream 160361 2728465 ~ 2734183 (+) True G129974
TU191860 lncRNA upstream 515189 2379083 ~ 2379355 (+) True G129947
TU191946 lncRNA downstream 1236 2915945 ~ 2916411 (+) True G130015
TU191948 lncRNA downstream 7456 2922165 ~ 2922620 (+) True G130017
TU191951 lncRNA downstream 12579 2927288 ~ 2927504 (+) True G130020
TU191955 lncRNA downstream 15718 2930427 ~ 2933709 (+) False G130022
TU191953 lncRNA downstream 16025 2930734 ~ 2933709 (+) False G130022
XM_043217923.1 mRNA upstream 943 2889623 ~ 2893601 (+) True serinc2
XM_043217019.1 mRNA upstream 6916 2885413 ~ 2887628 (+) True LOC122323290
XM_043218196.1 mRNA upstream 329988 2380621 ~ 2564556 (+) False ptprua
XM_043218258.1 mRNA downstream 4659 2919368 ~ 2922019 (+) True edn2
XM_043217091.1 mRNA downstream 44884 2959593 ~ 2978416 (+) True phactr4a
XM_043217578.1 mRNA downstream 235368 3150077 ~ 3163642 (+) True LOC122323611
XM_043217196.1 mRNA downstream 571793 3486502 ~ 3491224 (+) True tbxta
XM_043218369.1 mRNA downstream 589400 3504109 ~ 3508711 (+) True nr0b2b
TU191942 other upstream 1052 2889689 ~ 2893492 (+) False serinc2
TU191918 other upstream 108196 2785925 ~ 2786348 (+) True G129993
XR_006247126.1 other upstream 564268 2330141 ~ 2330276 (+) True LOC122324256
TU191722 other upstream 921160 1970692 ~ 1973384 (+) False LOC122323678
XR_006247023.1 other upstream 1222203 1657298 ~ 1672341 (+) False LOC122323556
TU191970 other downstream 55978 2970687 ~ 2978416 (+) False phactr4a
TU192043 other downstream 178358 3093067 ~ 3093714 (+) True G130077
TU192216 other downstream 845158 3759867 ~ 3760985 (+) True G130208
TU192476 other downstream 1330059 4244768 ~ 4259085 (+) True G130372
XR_006247039.1 other downstream 1479876 4394585 ~ 4406579 (+) True ptpn2b

Expression Profile